Oxygen Transport in Red Blood Cells: Proceedings of the 12th Aharon Katzir Katchalsky Conference, Tours, France, 4–7 April 1984
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Oxygen Transport in Red Blood Cells - Claude Nicolau
Israel
Influence of Heme Pocket Geometry on Ligand Binding to Heme Proteins
K.H. Winterhalter and E.E. Di Iorio, Laboratorium fuer Biochemie I, Eidgenoessische Technische, Hochschule, ETH-Zentrum, Universitaetsstrasse 16, 8092 Zurich, Switzerland
Publisher Summary
This chapter discusses the influence of heme pocket geometry on ligand binding to heme proteins. For the binding to the heme-iron of a ligand molecule, three steps characterized by energy barriers are distinguished: (1) penetration of the ligand from the solvent, across the structured hydration shell, into the protein matrix; (2) diffusion through the matrix into the heme pocket; and (3) the binding to iron from inside the pocket. The geometry of the heme pocket is influenced by two main factors. The most prominent one is genetic variety of the protein. For a given heme protein, the geometry is influenced by fluctuations of the proteic structure and steric changes in the prostetic group and are caused by alterations of the position of the iron relative to the heme plane. This is often caused by structural changes in the protein and frequently entails changes of the position of the heme within the pocket.
Oxygen binding, and its delivery to the place of consumption, is the continent in which the city of oxygen transport by red blood cells lies. The problem of oxygen transport is old, but new insight is gained every year. Table I gives an overview of the continent and the roads to and from the city. The levels of traffic regulation, as they are conceived presently, are also given.
Table I
The levels of regulation of O2 supply to tissues
Oxygen, at its various places of consumption, is needed for a variety of different types of metabolism. They are summarized in table II. From this table it is evident that oxygen affects all walks of biochemistry in areobic organisms, from energy production to cancer.
Table II
Types of metabolisms in which oxygen is paramount
As many of the regulatory mechanisms of oxygen transport by red blood cells (Table I.B) will be discussed by other participants of this conference, the topic of this talk is limited to the innermost events inside the hemoglobin molecule.
The overall anatomy of a sperm whale myoglobin (SW-Mb) molecule (also representative of a hemoglobin chain) is given in fig. 1. For the binding to the heme-iron of a ligand molecule, coming from the solvent, at least three steps, characterized by energy barriers (Austin et. al., 1975), must be distinguished:
Figure 1 Cross section of a sperm whale myoglobin molecule
1. Penetration of the ligand from the solvent, across the structured hydration shell, into the protein matrix.
2. Diffusion through the matrix into the heme pocket.
3. Binding to iron from inside the pocket.
The corresponding reaction scheme is summarized in fig. 2. Some detailed informations on steps 1 and 2, taken together, have recently been obtained (Jameson, et al., 1984). Studying the quenching of fluorescence of the porphyrin by oxygen in SW-Mb and normal adult human hemoglobin (Hb-A) lacking the iron atom in their heme, the authors have been able to distinguish between the velocities of oxygen aquisition by the protein (k+), of exit of the ligand form the protein (k−) and of its migration through the proteic matrix (X). These velocities are different for SW-Mb and Hb-A as shown in table III.
Table III
Kinetic parameters affecting the motion of oxygen in SW-Mb and Hb-A. See the text for the definitions of the rate constants.
Figure 2 General reaction scheme between ligand and heme protein
P denotes Protein; X denotes Ligand; subscript s denotes penetration from the solvent into the matrix, and viceversa; subscript m denotes diffusion through the matrix into the heme pocket, and viceversa; subscript h denotes binding to the heme from inside the pocket, and viceversa.
On step 3 many more data have been accumulated in both monomeric heme proteins and model heme compounds, such as picket fence
porphyrins (Collman, et al., 1983.a, 1983.b), pocket
porphyrins (Hashimoto, et al., 1982) and chelated protoheme (Traylor, 1981).
The geometry of the heme pocket is influenced by two main factors. The most prominent one is, of course, genetic variety of the protein. For a given heme protein, the geometry is influenced by fluctuations of the proteic structure and steric changes in the prostetic group, as they are caused by alterations of the position of the iron relative to the heme plane. This, in turn, is often caused by structural changes in the protein and frequently entails changes of the position of the heme within the pocket.
Here we would like to report on the functional properties of some natural monomeric heme proteins. This might seem a disappointment to the present audience, as human hemoglobin is tetrameric. However, the relative functional propreties of the geometrically slightly different heme pockets in alpha and beta chains, contained in tetrameric proteins (Shaanan, 1983), vary differentially as allosteric changes take place. This is well exemplified by the binding of allosteric effectors. For instance 2, 3-DPG binds between the two beta chains, thus stabilyzing the low affinity conformation of Hb-A. The effect of this lowering of oxygen affinity is quantitatively more pronounced on alpha chains than on beta (Mansouri, and Winterhalter, 1974). The difference between alpha and beta chains in oxygen affinity in the high affinty state of hemoglobin is about 1.6 to 1.8 (Olson and Gibson, 1971, Sawicki and Gibson, 1977), but considerably higher in the low affinty state hemoglobin (Mansouri and Winterhalter, 1973, 1974). For clarity we will limit our considerations presently to monomeric heme proteins which have important differences in their heme pockets.
The proteins investigated in this framework are: SW-Mb, normal human alpha and beta chains (alpha-A and beta-A), beta chains from hemoglobin Zurich (beta-ZH, beta63 E7 Arg) and liver fluke (Dicrocoelium dendriticum) hemoglobin (Dd-Hb), a monomeric hemoglobin which, among other structural modifications, has a glycine instead of the distal histidine (Wilson K.J., personal communication; Smit and Winterhalter, 1981). In table IV the kinetic and the calculated equilibrium constants for the binding of CO and oxygen to different heme proteins are reported. Even a superficial look at the listed rates shows how broad their range of variability is. A change of around three orders of magnitude, for both the CO association and dissociation velocities, is observed. In contrast, smaller variations are found for oxygen. It should be born in mind that all these proteins have the same overall tertiary structure, the same heme, inserted in a hydrophobic pocket, as the active site and a histidine as the proximal ligand of the