Beruflich Dokumente
Kultur Dokumente
ENGINEERING
BME 499
FINAL DESIGN REPORT
LADDER TO RECOVERY LTD.
GROUP 2:
SARAH WONG V00772780
SAM POLLOCK V00722695
MICHAEL PEIRONE V00732725
ALEXANDER BURDEN V00729892
Summary
The ability to perform simple, everyday tasks, such as tying a shoelace or buttoning a
shirt, are often lost after experiencing a stroke. The Brown lab at the University of
Victoria dedicates their research to understanding what happens to the brain after a
stroke, allowing them to devise intelligent strategies to help stroke patients recover
some motor functions and achieve a higher quality of living. Mice and rats are
commonly used to model the effects of strokes because they display similar poststroke motor deficits to humans. Strokes are induced in a specific motor part of the
brain, which leads to subtle defects in how well the rodent uses its left forepaw. This
project targets the challenge of quantifying these subtle defects in the sensory-motor
function of the affected paw. The testing system features a horizontal ladder with
rungs spaced 1-2 cm apart, and the placement of the affected paw on each rung of the
ladder will be measured to determine stroke severity. The rungs of the ladder are
wired to act as sensors such that a complete grasp results in the completion of two
circuits, while a partial grasp results in the completion of only one circuit. Healthy
rodents are expected to display mostly full grasps, whereas those with induced strokes
are expected to show a higher ratio of partial grasps to full grasps. The grasp results
from each trial are displayed in table format on a screen connected to the testing
system.
Table of Contents
Summary .................................................................................................................................. 2
1.0
1.1
Introduction .................................................................................................................. 4
The Brown Lab ......................................................................................................... 4
2.0
3.0
4.0
4.1
4.2
4.3
5.0
6.0
6.1
6.2
6.3
7.0
8.0
Testing ......................................................................................................................... 19
9.0
10.0
11.0
12.0
13.0
1.0 Introduction
The purpose of this project is to design a method of determining the presence and
severity of strokes in laboratory mice. To accomplish this, a horizontal ladder with the
ability to detect the paw position of a mouse was developed. As part of stroke
treatment research, a mouse is encouraged to walk across the ladder and grasp two
millimeter rungs with its paws. A mouse with a stroke does not have the ability to
fully grasp the rungs due to sensory-motor deficits in one or more paws. Mice without
strokes are able to completely wrap their paws around the rung.
A new method of detecting the manner in which the mouse grasps the ladder rungs
must be developed, as the current method requires a substantial number of manhours to review a captured video of the test frame-by-frame. The new method should
be able to instantly record the number of each type of grasp (full or partial) with a
microcontroller for easy and efficient analysis by lab technicians.
1.1 The Brown Lab
The Brown Lab at UVic, headed by Dr. Craig Brown, studies brain plasticity to
examine changes in the brain. Research with mice is performed to determine how the
brain is affected structurally and functionally after experiencing a stroke. The brains of
mice that experience strokes are imaged by fluorescence-based techniques to track
changes to the brain. Dr. Brown and his associates also use this imaging to view how
the mice encode new information. By knowing the pathways in the brain that are
affected by a stroke strategies to repair the brain can be devised and tested. Before a
stroke mice are trained to walk across a horizontal ladder with rungs less than two
millimeters in diameter. Mice will walk differently across the ladder before and after a
stroke; a mouse after a stroke cannot properly grasp the rung and will instead only
place their paw on top of the rung. The difficulty a mouse has in grasping the rungs
can be related to the severity of the stroke; the more often a mouse fails to fully grasp
a rung the worse the stroke is. By having the mice walk across the ladder several times
over a number of weeks the rate of recovery that the mouse exhibits can be
determined.
signal. Mice are very lightweight, so the displacement difference (and respective
voltage change) between a strong and weak grasp would be minimal. An amplification
circuit using operation amplifiers would have to be implemented to boost the input
signal, so that an appreciable difference in voltages can be seen. The additional
amplification circuit on each sensor limits the number of sensors that could be made,
due to both time and budget constraints.
Capacitive sensing was briefly tested and a substantial noise component in the signal
was noted, additionally the function relating the force upon the wire to the output
voltage was not entirely reliable. Mice are especially unpredictable, so this problem
may have been even more severe in application. Because of this, and the time and
budget constraints previously mentioned, this approach was not pursued
4.2 Force Detection
Mouse step detection using force sensors is a technique that can be quite costly and
may not produce sought after results. However, force sensors have seen some use in
literature (see work by G. Cavallo, D. Campolo, F. Keller, and E. Guglielmelli). Thus,
the method was briefly considered.
Similar to the capacitive method mentioned above, the force detection approach
measures how much force the mouse is applying as it steps. As the sensor directly
measures the force, there is no issue of relating output voltage to grasp strength.
Unfortunately, this method has two prominent issues, specifically data collection and
price. Currently, many researchers use the ladder because they can see exactly how the
mouse grasps a rung and then gather quantitative data from that. Using force
detection, researchers would need to collect more evidence and create new
assumptions for the relationship between stroke recovery and force distribution of
mice movement, which unlike the current approach is a field with relatively little
research. The cost of a device that uses force detection can also be very expensive. A
very sensitive sensor is needed because mice only weigh 20-30 grams. After some
research, force sensors found on digikey.ca cost $48 when ordered in bulk or $134
individually. Therefore, following the design constraint of a horizontal ladder design
would be prohibitively costing due to the number of sensors required. While the
Brown Lab was willing to provide funding for the project, this approach would have
required a drastic departure from their current approach to stroke detection with no
guarantees of functionality. Thus, this design was not pursued.
7
This was a very feasible alternative; so a few days were spent constructing initial
prototypes. The cantilever beams were assembled from hair clips and sanded down so
that only the metal remained. They were separated from the rung by heat shrink and
then fixed using another layer of heat shrink with some glue. Wires were wrapped
around and glued to each beam so that it could connect to a microcontroller.
After all 4 cantilevers were fixed to the beam, it was apparent that this alternative
would be less viable than initial expected. Altogether with the metal rung and the 4
cantilever beams, the sensor was about 5 millimeters in diameter. The beams and rung
would need to be substantially scaled down to around 2 millimeters in diameter for
the mouse to be able to grasp it in the proper manner.
8
While this alternative show promise, it was simply too big for the mice. Given that
there was no manner in which the size of the sensor could be reduced without
specialize manufacturing processes, the design was not pursued.
A more efficient iteration was then developed. Instead of having two separate rungs
per step, one rung was made with the four wires insulated from one another at the
center. The rung functioned the same, except only a single rung needed to be
constructed for each step. This cuts the time it takes to construct the rungs nearly by
half, while also ensuring that the two sides are aligned and stable since only one solid
piece of metal doweling is used, instead of two. See Figure 3 for the exact structure.
In theory, this design was quite effective, however in practice the manufacturing
process was incredibly difficult. Heat shrink was used to separate the wire from the
9
rung, and then a second layer of heat shrink secured each wire in place. The primary
difficulty in assembly presented itself when trying to connect the 4 wires in the
middle. The rung diameter is 1.6 mm and the wire is approximately 40 gauge. The
small size and delicate nature of the wire made the assembly of even a single rung a
very time intensive measure with a poor success rate. It was crucial that the wires were
oriented in the exact same positions (top and bottom) for each rung so that there
would be no variation in results from sensor to sensor. After many frustrating
attempts at securing the wires in place, a new design had to be implemented.
The next design iteration used magnet wire for the sensors as it features a very thin
enamel layer around the copper that provides a great deal of strength in addition to its
insulating properties. The two top wires and bottom wire pairs of each rung can be
tied together in the middle while remaining insulated from each other. The central
part of the wire, which makes contact with the rung, can be sanded to expose the
copper so it still functions properly. Manufacturing was much easier as essentially only
two wires need to be properly oriented on the rung, instead of four. It should be
noted that one additional wire is wrapped around the rung to connect it with power,
however the orientation of this wire has no effect on the final design. Figure 4 shows
this design concept.
Figure 4: Illustration: side view of final rung design with wires tied in the middle. Note, the tie is exaggerated
and in reality is much smaller to allow a layer of heat shrink to secure it over top.
10
Figure 4 was the final rung sensor design because it allowed for proper wire
orientation precision with relatively quick manufacturing. The only design change
made following the adoption of magnet wire was changing the two wires orientation
to 90 apart from each other, instead of 180. This is because the mouse was rarely
able to grasp the bottom wire, but the Brown Lab still considers a grasp as correct if
the mouses paw wraps around to the front side of a rung.
The next step in the design process was to choose a manner in which to connect 18
of the sensor rungs to a microcontroller. As seen in Figure 4, there are 5 leads for a
single rung, so there would be 18 x 5 = 90 leads in the final ladder that need
connection to the microcontroller. The solution was to implement copper trace panels
on either side of the ladder. The copper traces would be made up of a group of wires
that simply run alongside the ladder. The wires from the rungs can then connect
directly to the copper trace, which then leads to the microcontroller. Some wiring
could be reduced by connecting all the power leads to a single wire on the traces,
removing 18 wires from the total. This would clean up the wiring substantially,
however, 82 wires remained that needed to connect to the microcontroller. During
testing, it was noticed that a mouse only spanned a maximum of five rungs when
walking across the ladder. Therefore, it could only possibly set off rungs that were a
maximum of five spaces away from each other. To reduce the number of
connections, the 18 rungs were broken up into 3 groups of 6. This means that rung
#1 would have the same connections as rung #7 and rung #13, and rung #2 would
have the same connection as rung #8 and rung # 14, etc. All together, the number of
connecting wires was reduced to 25 ((4 wires x 6 rungs in a group) +1 power line),
which is almost a quarter of what was needed originally. The 25 copper trace lines
then connect to the microcontroller for signal collection and management.
11
Figure 6: Final ladder with copper trace panels on the side. Each rung connects to a particular copper trace
wire
The microcontroller gathers input from each rung and outputs the total number of
full grasps and the total number of partial grasps onto an LCD screen. The original
goal of the project was to differentiate between all four paws and have a distinct grasp
total for each, which is why the rungs were separated in the middle. However, due to
time constraints, this was not implemented. Thus, in the final prototype only the total
number of partial grasps and total number of full grasps is displayed. If time
permitted, the next step in the design process would be to refine the algorithm so that
it could determine which paw activated a sensor and assign the result accordingly.
The structure of the ladder is for the most part the same functionally as a ladder the
Brown Lab was using previously, however the construction was far sturdier and more
stable. The only difference functionally is that the new ladder has two additional
Plexiglas panels attached to hinges to hold the copper trace wires. The hinges allow
the researcher to lift up the panel without breaking the sensor connections so that a
webcam can be run underneath the bridge for data collection in the traditional
manner. While the new ladder was based upon the previous model, several design
modifications were carried out. This was to ensure the new design followed the new
12
aluminum, while also being transparent so that the lab technicians can see the mouse
through it. The rungs are raised to allow the researchers to move a camera beneath
the ladder for grasp verification via the traditional method.
14
The algorithm used in the final prototype uses polling and the system timer to
determine grasp type. All of the sensors on the tops of the rungs are polled
continuously. When a sensor is triggered its corresponding bottom sensor is also
polled. As long as the top sensor is held a counter is incremented, a second counter is
incremented if the bottom sensor is also being held. Once the mouse releases the
sensor entirely, these counters are compared. If the bottom sensor was active for a
certain percentage of the time the top sensor was triggered, the system registers a full
grasp. Otherwise, a partial grasp is flagged.
6.3 Electrical Components
The rungs of the ladder are designed to differentiate between mice grasps. The rungs
have this ability due to their sensor capability. Sensor wires run approximately one
millimeter above the length of the rung, situated 90 degrees radially apart from each
other. An additional wire is connected directly to the rung to provide constant power
from the microcontroller. The sensor wires were made by removing the enamel
insulation on magnet wire in certain locations to allow for direct contact with the
rung. When the mouse steps on a rung, either one or both of the sensor wires come
in contact with the main power rung completing either one or two circuits depending
on what type of grasp the mouse makes. There are five wires for each rung: four wires
to distinguish between the left and right paws and between the top and bottom of the
rung, and one power wire. When only one circuit is completed for a specific foot, a
15
partial grasp is registered and displayed as a Bad Grasp. When both circuits are
completed for a specific foot, a full grasp is registered and displayed as a Good
Grasp.
There are twelve wires running horizontally across the length of the ladder to which
the wires from each rung may be attached. This segments the rungs into three groups,
where all rungs within a group have unique inputs to the microcontroller. This limits
the number of wires without risking information overlap from a mouse triggering two
sensors sharing the same inputs.
detection system: the prototyping, initial testing, construction, algorithm design, final
accuracy testing, and output system design.
At the beginning of the project an initial rung design was manufactured to determine
if the idea was feasible. This involved powering a metal beam and using duct tape to
separate the wire from the beam, as shown in Figure 12. The outputs were connected
to a breadboard with an LED and resistor in series. When the wires touched the metal
beam the LED went on and it was determined that the design could work to detect
the step patterns of the mice. Following this the design was scaled down to use a 1.5
mm diameter rung and much smaller wires. This ensures the mice actually need to
grasp the rungs to not fall, with larger rungs they would be able to stand atop the
rungs without making an effort to grasp them.
The final rung design consists of two pairs of wires on the top and bottom of a
copper rung, attached with heat-shrink at the ends and center. The wire used has an
enamel coating that insulates the wire to prevent it from being triggered unless the
mouse directly completes the circuit. To fabricate the rungs the enamel coating must
be removed in short segments with sandpaper. This exposed wire will conduct
electricity from the powered rung to the microcontroller. The wire which was used
before did not have an enamel coating and the rungs were more susceptible to being
falsely triggered. The placement of the wires on the rung was redesigned because the
mice were not able to trigger the bottom wire. Originally the wires were 180 degrees
apart, but after testing with mice they were moved closer together.
The original design of the ladder was based off of a ladder provided by the Brown
Lab at UVic. When performing initial testing of the rung design the provided ladder
was used, but a new ladder was manufactured to accommodate the new rungs. Many
17
wires were hanging off the side of the ladder and a panel had to be added to clean this
up. The wires run the length of the ladder can go directly to the microcontroller at the
end.
At the same time as the construction of the rungs, the code from the microcontroller
was written to manage the input from the rungs. The initial code was written to light
an LED when one of the rungs was triggered. This was done to ensure the
microcontroller could take inputs from multiple rungs at a time. As microcontrollers
have only a limited number of ports, each port was to accept inputs from multiple
rungs spaced far apart. Near the end of the project the code was re-written to accept
the multiple inputs and determine the number of good grasps and bad grasps. An
LCD screen was used to show the number of full grasps and partial grasps.
Task
June 1
June 8
June 15
June 22
June 29
July 6
July 13
July 20
July 27
Prototyping
Initial Testing
Modifications /
re-testing
Rung Construction
Core Software Design
Assembly
Full Apparatus Testing
Modifications
Output Method Design
Final Testing
Testing was done throughout the project to ensure the design upgrades worked. In
some of the tests the outputs from the ladder did not give the desired results and a
portion of the rung or the code had to be redesigned. One example of this was when
a mouse walked across the ladder and was only outputting Bad Grasps and no Good
Grasps. The orientation of the rungs was changed and more testing was done. This
resulted in more Good Grasps.
The Gantt chart shown in Table 1 outlines the project plan and the expected
completion date. This was followed very closely when designing and assembling the
18
bridge, and testing the design. Rung construction was completed throughout the
project because changes were made to the design, and some of the rungs did not
work. This ensured the rungs were in full working condition at each stage of testing.
Sarah
Sam
Alex
Michael
Design and
fabrication of
modified sensor
rungs
Microcontroller electrical
design and port
management
Design and
fabrication of
modified sensor
rungs
Design and
fabrication of ladder
system
Graphic user
interface design
Microcontroller Software
design
Design and
fabrication of ladder
system
8.0 Testing
In order to validate the ladder design, extensive testing was carried out at various
stages of the projects development. Aside from validation checks during
manufacturing, testing was primarily carried out in the Brown Lab at the University of
Victoria, using live mice made available by the lab personnel. As of the start of this
project, the Brown Lab had pre-existing animal rights guidelines and codes for testing
their mice on horizontal ladders for stroke severity determination via the video
capture method described previously. Thus, it was determined that as long as all
handling of the Brown Labs mice was done by lab personnel, no additional animal
rights guidelines or regulations would need to be drafted.
Live animal testing was conducted at each stage of project completion. The mice used
in all testing were healthy, un-stroked mice, trained by the Brown Lab to cross a
horizontal ladder in order to collect data in the traditional manner. Testing consisted
of having a single mouse cross the ladder repeatedly, with the team observing the
electrical or software output as the mouse crossed the sensors. Three distinct rounds
of animal testing occurred, each with a specific validation goal in mind. The first
round was to ensure that the digital sensor concept was valid using only a few rungs.
The second was to validate the newly constructed ladder and expand the number of
rungs under test by using a microcontroller to log the outputs. The final round of
19
testing was to confirm the performance of the entire ladder system, including
microcontroller software.
Initial testing was conducted in late May 2015. After the first prototype sensors were
developed, the concept was validated using ad-hoc testing by pressing on the sensors
to confirm that the circuit completed in a reliable fashion. Once the sensor design was
miniaturized to adhere to the design restrictions, a single prototype rung was tested by
placing it in an obsolete ladder provided by the Brown Lab. Over the course of late
May to early June, the rung materials were iterated on to further miniaturize the rungs
and improve the speed of the manufacturing process. One to three sample rungs were
tested following the iteration process to reconfirm functionality. The sensor leads
were connected in series with a 5 volt power source, a resistor, and an LED to
indicate when the sensor was triggered. By early June, the construction of the new
ladder design was nearing completion, thus the second round of testing began.
Once the new ladder was built, the next stage of live testing could commence. The
key goal of these tests were to determine what effect, if any, the use of the new ladder
had on the sensing ability of the rungs. Additionally, the LEDs used in the first stage
were replaced with an Arduino microcontroller that ran a simple polling program,
when a sensor activation was detected it would output this to an attached laptop.
Using this approach would inform the team if the polling time of the microcontroller
would interfere with the data acquisition.
The final tests carried out at the Brown Lab occurred in late July, and were intended
to validate the entire prototype structure. The final design put through testing had 16
sensing rungs on the custom-built ladder, and used an Arduino Mega microcontroller
to poll the sensors and display the results on an LCD screen. These tests confirmed
the functionality of the design and the proper operation of the microcontroller
software, while also highlighting several broken sensor rungs that were not operating
properly.
20
21
scale of these sensors made manufacturing by hand incredibly time consuming and
the final rungs had excessive variance. A new method needs to be implemented;
potentially the use of small jigs to orient the wires would result in better quality rungs.
Alternatively, two 3D printed end caps with holes for the wires could be used instead
of heat shrink, if a printer with sub-millimeter precision was available.
Alternatively, an entirely different approach could be used. A method based upon
computer vision processing instead of digital sensing could potentially have better
results. Image processing takes out the need for a researcher by analyzing the video of
a mouse walking across the ladder with software to determine what kind of grasp was
made for each step the mouse takes. This design alternative was first considered four
weeks prior to the project deadline, leaving too little time to consider implementation.
However, it was unanimously decided that if more time had been available, this
alternative would have resulted in a better step classification system.
One major benefit is that software of this type could be used with the original
ladder that researchers are using; the only change that would be necessary would be
how researchers record the videos. Currently the camera is moved underneath the
ladder, following the mouse as it steps across the ladder. For better image processing
results the video would need to be stationary.
The second benefit to an image processing approach is that there are limited material
requirements. Aside from the tools already in use at the Brown Lab (the ladder and
camera primarily), no additional parts are required.
As mentioned before, this alternate design would most likely have been
implemented if it were discovered earlier in the projects lifetime. This approach
mimics the current methodology used by the Brown Lab but moves the video analysis
from a technician to an algorithm. There is thus an added benefit consistency, on a
given input the system would always give the same result. Although the researchers
are specially trained to identify the different mouse step types, variance between
different researchers may still occur. A software program remove this variance and
provide a universal guideline of how the mice are stepping.
23
Part Number
Arduino Mega
Microcontroller
Source
Amazon.caSainSmart
Quantity
25.99
25.99
10064-0000000
General Metals
and Plastics
1.35/FT
12 FT
16.2
10054-0000000
General Metals
and Plastics
3.57/SQFT
3.219
SQFT
11.49
91772A294
McMaster-Carr
6.34/100
20
1.268
91772A289
McMaster-Carr
8.34/50
0.668
Hex Nut
90257A038
McMaster-Carr
9.60/50
24
4.608
Washer
90107A012
McMaster-Carr
8.18/100
12
0.9816
98380A427
McMaster-Carr
7.55/5 (5x2in)
2.2m
65.39
Amazon.caCARCHET
2.99
2.99
Breadboard
Amazon.caCARCHET
4.08
4.08
133.67
Table A-1: Ladder Components part cost estimate.
Source
Cost ($)
Description
Island Blue
23.52
Home Depot
6.68
Home Depot
28.41
Home Depot
8.91
Queale Electronics
26.07
General Metals
31.00
25.99
Total
150.58
Table A-2: Overall Project costs and sources.
24
25
26
27
BME 499
Ladder to Recovery Inc.
PRELIMINARY PROGRESS REPORT
GROUP 2:
SARAH WONG V00772780
SAM POLLOCK V00722695
MICHAEL PEIRONE V00732725
ALEXANDER BURDEN V00729892
28
Abstract
The ability to perform simple, everyday tasks, such as tying a shoelace or buttoning a shirt, are
often lost after experiencing a stroke. The Brown lab at the University of Victoria dedicates their
research to understanding what happens to the brain after a stroke, allowing them to devise
intelligent strategies to help stroke patients recover some motor functions and achieve a higher
quality of living. Mice and rats are commonly used to model the effects of strokes because they
display similar post-stroke motor deficits to humans. Strokes are induced in a specific motor part
of the brain, which leads to subtle defects in how well the rodent uses its left forepaw. This
project targets the challenge of quantifying these subtle defects in the sensory-motor function of
the affected paw. The testing system will feature a horizontal ladder with rungs spaced 1-2 cm
apart, and the placement of the affected paw on each rung of the ladder will be measured to
determine stroke severity. The rungs of the ladder will be wired to act as sensors such that a
complete grasp will result in the completion of two circuits, while a partial grasp and a slip will
result in the completion of only one or neither circuit. Healthy rodents are expected to display
only full grasps, whereas those with induced strokes are expected to show a significant number
of partial grasps and slips. The grasp results from each trial will be displayed in table format on a
screen connected to the testing system.
29
of a typical ladder were fitted with sensors. The chosen solution to avoid high expenses is to
build from scratch digital sensors that will act as very simple switches in a circuit. Two wires
will run a couple millimeters on the top and bottom of each rung. The metal rung will be
connected to power and each wire will linked to a microcontroller through a resistor. As the
mouse grips the rung it will complete a connection between the wires and the rung. The signal
from the wires on a given run will be used by the microcontroller to determine the grip type. A
full grip of the mouse's paw will touch both wires to the rung, while just a partial grasp will only
connect the top wire. With this simple sensor design, it will be possible to tell whether a mouse
has fully or partially grasped each rung, the ratio of which can then aid researchers by showing
how well the mouse is recovering from a stroke.
With the sensor on each rung designed, the sensor leads will be connected to an Arduino
to count, categorize, and display the mouse steps. A final decision has not been made as to how
this information will be displayed, however it will most likely either be shown on an LCD screen
or exported to a website.
4.0 Project Work Plan and Progress Made
The intended design of the mouse ladder is focussed upon the custom rung sensors, and the
microcontroller needed to manage the signals from each rung. At this stage there are six major
milestones which must be completed in order to create a fully functional stroke detection system,
the prototyping, initial testing, construction, algorithm design, final accuracy testing, and output
system design.
Firstly, the final rung prototypes must be completed. Several prototypes have already been
assembled, including oversized proof-of-concept and actual size tests of various manufacturing
styles. However, a prototype indicative of the final product must be assembled for use in testing
and, if sufficient, to use as a model for full-scale production of the rung sensors.
Once the final prototype is complete, testing at the University of Victoria Brown Laboratory will
be conducted to ensure that the system works well with actual mice. Key aspects of testing
include ensuring that the mouse naturally grasps the rung sensor, that the mouse exerts enough
force to complete the circuit, and that the rung is not damaged or degraded by repeated grasps.
After the viability of the final prototype has been confirmed, full-scale production will begin. A
plexiglass ladder frame is available for re-purposing from the Brown Laboratory, unless
31
unforeseen circumstances ensue this means that the only construction necessary will be creating
all of the approximately 60 rungs (about 30 rungs each for the right and left side).
At the same time as the construction of the rungs, other group members will begin writing the
necessary microcontroller code to manage the input from the rungs. As microcontrollers have
only a limited number of ports, each port will accept inputs from multiple rungs spaced far apart.
The code design will need to accommodate this fact.
Once the physical system and code are complete, exhaustive testing will be conducted, with
results compared to the standard method of determining the number of partial and failed grasps.
Based upon the results modifications to the coding or physical design may be necessary. The
data results will be obtained via a serial output buffer.
Finally, the data output system will be devised, which will replace the serial buffer used in
testing. The ease of use for researchers and general appearance will depend on available time. If
the rest of the project is behind schedule, a simple LCD screen output will be used, however if
possible a web portal will be developed to display results from the system.
Task
June 1
June 8
June 15
June 22
June 29
July 6
July 13
July 20
July 27
Final Prototyping
Initial Testing
Modifications / re-testing
Rung Construction
Core Software Design
Assembly
Full Apparatus Testing
Modifications
Output Method Design
Final Testing
32
Sarah
Sam
Design and
Sensor design and
fabrication of
implementation
modified sensor rungs
Design and
fabrication of ladder
system
Alex
Michael
Microcontroller
electrical design and
port management
Design and
fabrication of
modified sensor rungs
Design and
fabrication of ladder
system
33
34
BME 499
INTERIM PROGRESS REPORT
GROUP 2:
SARAH WONG V00772780
SAM POLLOCK V00722695
MICHAEL PEIRONE V00732725
ALEXANDER BURDEN V00729892
Summary
The ability to perform simple, everyday tasks, such as tying a shoelace or buttoning a
shirt, are often lost after experiencing a stroke. The Brown lab at the University of
Victoria dedicates their research to understanding what happens to the brain after a
stroke, allowing them to devise intelligent strategies to help stroke patients recover
some motor functions and achieve a higher quality of living. Mice and rats are
commonly used to model the effects of strokes because they display similar poststroke motor deficits to humans. Strokes are induced in a specific motor part of the
brain, which leads to subtle defects in how well the rodent uses its left forepaw. This
project targets the challenge of quantifying these subtle defects in the sensory-motor
function of the affected paw. The testing system will feature a horizontal ladder with
rungs spaced 1-2 cm apart, and the placement of the affected paw on each rung of the
ladder will be measured to determine stroke severity. The rungs of the ladder will be
wired to act as sensors such that a complete grasp will result in the completion of two
circuits, while a partial grasp and a slip will result in the completion of only one or
neither circuit. Healthy rodents are expected to display only full grasps, whereas those
with induced strokes are expected to show a significant number of partial grasps and
slips. The grasp results from each trial will be displayed in table format on a screen
connected to the testing system.
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Two wires will run a couple millimeters on the top and bottom of each rung. The
metal rung will be connected to power and each wire will be linked to a
microcontroller through a resistor. As the mouse grips the rung it will complete a
connection between the wires and the rung. The signal from the wires on a given rung
will be used by the microcontroller to determine the grip type. A full grip of the
mouse's paw will touch both wires to the rung, while just a partial grasp will only
connect the top wire. With this simple sensor design, it will be possible to tell whether
a mouse has fully or partially grasped each rung, the ratio of which can then aid
researchers by showing how well the mouse is recovering from a stroke.
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With the sensors on each rung designed, the sensor leads will be connected to an
Arduino to count, categorize, and display the mouse steps. A final decision has not
been made as to how this information will be displayed, however it will most likely
either be shown on an LCD screen or exported to a website. An LCD screen will
most likely be chosen to display data because it requires only a few microcontroller
I/Os, is easy to program, and it provides almost real-time data output for the
researcher to see. Using a website to output the data requires an additional
transmitter and some other hardware, as well as more complex software. However,
unlike the LCD screen, a website has the ability to save data and therefore show
multiple tests performed.
4.0 Project Work Plan and Timeline
The intended design of the mouse ladder is focused upon the custom rung sensors,
and the microcontroller needed to manage the signals from each rung. At this stage,
there are six major milestones which must be completed in order to create a fully
functional stroke detection system: the prototyping, initial testing, construction,
algorithm design, final accuracy testing, and output system design. Thus far,
prototyping and initial testing are completed, with construction in progress.
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The current rung design consists of two wires on the top and bottom of the metal
rung, attached with heat-shrink at the ends and center. The wire used has an enamel
coating that insulates the wire that prevents it from being triggered unless the mouse
directly completes the circuit. To fabricate the rungs the enamel coating must be
removed in short segments with sandpaper. This exposed wire will conduct electricity
from the powered rung to the microcontroller. Currently, the rung design is partially
being reconsidered, with the wire placement potentially being changed to top and
front, to better detect the mouses paw movement.
After testing the newewst rung design, full-scale production will begin. A Plexiglas
ladder frame has been designed and constructed by the team, and the next stage of
construction will be building the necessary number of sensing rungs.
At the same time as the construction of the rungs, other group members will continue
to write the necessary microcontroller code to manage the input from the rungs. As
microcontrollers have only a limited number of ports, each port will accept inputs
from multiple rungs spaced far apart. The code design will need to accommodate this
fact.
Once the physical system and code are complete, exhaustive testing will be conducted,
with results compared to the standard method of determining the number of partial
and failed grasps. Based upon the results modifications to the coding or physical
design may be necessary. The data results will be obtained via a serial output buffer.
Finally, the data output system will be devised, which will replace the serial buffer
used in testing. The ease of use for researchers and general appearance will depend on
available time. If the rest of the project is behind schedule, a simple LCD screen
output will be used, however if possible a web portal will be developed to display
results from the system.
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Task
June 1
June 8
June 15
June 22
June 29
July 6
July 13
July 20
July 27
Prototyping
Initial Testing
Modifications / re-testing
Rung Construction
Core Software Design
Assembly
Full Apparatus Testing
Modifications
Output Method Design
Final Testing
Sarah
Sam
Alex
Michael
Design and
fabrication of
modified sensor
rungs
Microcontroller electrical
design and port
management
Design and
fabrication of
modified sensor
rungs
Design and
fabrication of ladder
system
Graphic user
interface design
Microcontroller Software
design
Design and
fabrication of ladder
system
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7.0 Conclusions
Currently, Ladder to Recovery is on schedule for the completion of the mouse step
detector project. The next steps are to complete the construction of the rungs, install
them into the new ladder structure, complete the analytical programming, and test the
overall system.
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