Influenza A virus

(A/goose/Taiwan/TNC1/2015(H5N8)) segment 3
cRNA sequence
GenBank: KT388443.1
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LOCUSKT3884432151bpcRNAlinearVRL17DEC2015
DEFINITIONInfluenzaAvirus(A/goose/Taiwan/TNC1/2015(H5N8))segment
3cRNAsequence.
ACCESSIONKT388443
VERSIONKT388443.1GI:923093315
KEYWORDS.
SOURCEInfluenzaAvirus(A/goose/Taiwan/TNC1/2015(H5N8))
ORGANISMInfluenzaAvirus(A/goose/Taiwan/TNC1/2015(H5N8))
Viruses;ssRNAviruses;ssRNAnegativestrandviruses;
Orthomyxoviridae;InfluenzavirusA.
REFERENCE1(bases1to2151)
AUTHORSHuang,P.Y.,Lee,C.D.,Yip,C.H.,Cheung,C.L.,Yu,G.,
Lam,T.T.,Smith,D.K.,Zhu,H.andGuan,Y.
TITLEGeneticcharacterizationofhighlypathogenicH5influenza
virusesfrompoultryinTaiwan,2015
JOURNALInfect.Genet.Evol.38,96100(2015)
PUBMED26690663
REMARKPublicationStatus:AvailableOnlinepriortoprint
REFERENCE2(bases1to2151)
AUTHORSHuang,P.Y.,Lee,C.C.,Yip,C.H.,Cheung,C.L.,Yu,G.,
Lam,T.Y.,Smith,D.K.,Zhu,H.andGuan,Y.
TITLEDirectSubmission
JOURNALSubmitted(14AUG2015)CentreofInfluenzaResearch,School
ofPublicHealth,TheUniversityofHongKong,LaboratoryBlock,LKS
FacultyofMedicineBuilding,21SassoonRoad,Pokfulam,HongKong
SAR,China
COMMENTGenBankAccessionNumbersKT388441KT388448represent
sequencesfromthe8segmentsofInfluenzaAvirus
(A/goose/Taiwan/TNC1/2015(H5N8)).
##AssemblyDataSTART##
AssemblyMethod::Lasergenev.9.0
SequencingTechnology::Sangerdideoxysequencing;454;Illumina
##AssemblyDataEND##

FEATURESLocation/Qualifiers
source1..2151
/organism="InfluenzaAvirus
(A/goose/Taiwan/TNC1/2015(H5N8))"
/mol_type="viralcRNA"
/strain="A/goose/Taiwan/TNC1/2015"
/serotype="H5N8"
/isolation_source="cloacal"
/host="goose"
/db_xref="taxon:1701764"
/segment="3"
/country="Taiwan"
/collection_date="17Jan2015"
/note="passagedetails:E1"
gene1..2151
/gene="PA"
CDS1..2151
/gene="PA"
/codon_start=1
/product="polymerasePA"
/protein_id="ALB07374.1"
/db_xref="GI:923093316"
/translation="MEDFVRQCFNPMIVELAEKTMKEYGENPKIETNKFAAICTHLEV
CFMYSDFHFIDERGKSIIVESGDPNALLKHRFEIIEGRDRTMAWTVVNSICNTTGVDK
PKFLPDLYDYKENRFIEIGVTRREVHTYYLEKANKIKSEKTHIHIFSFTGEEMATKAD
YTLDEESRARIKTRLFTIRQEMANRGLWDSFRQSERGEETIEERFEITGTMRRLADQS
LPPNFSSLENFRAYVDGFKPNGCLEGKLSQMSKEVNARIEPFMKTTPRPLRLPDGPPC
SQRSKFLLMDSLKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPNIVKPHVKGINPNY
LLAWKQVLAELQDIENEETIPKTKNMKKTSQLKWALGENMAPEKVDFEDCRDVSDLRQ
YDSDEPEPRSLSSWIQSEFNKACELTDSSWIELDEIGEDVAPIEHIASMRRNYFTAEV
SHCRATEYIMKGVYINTALLNSSCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGR
SHLRNDTDVVNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRTAIGQVSRSMFLYVR
TNGTSKIKMKWGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWPIGES
PKGVEESSIGKVCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQAFRDNLEPGTFD
LGGLYEAIEECLINDPWVLLNASWFNSFLTHALK"
gene1..760
/gene="PAX"
CDSjoin(1..570,572..760)
/gene="PAX"
/ribosomal_slippage
/codon_start=1
/product="PAXprotein"
/protein_id="ALB07375.1"
/db_xref="GI:923093317"

/translation="MEDFVRQCFNPMIVELAEKTMKEYGENPKIETNKFAAICTHLEV
CFMYSDFHFIDERGKSIIVESGDPNALLKHRFEIIEGRDRTMAWTVVNSICNTTGVDK
PKFLPDLYDYKENRFIEIGVTRREVHTYYLEKANKIKSEKTHIHIFSFTGEEMATKAD
YTLDEESRARIKTRLFTIRQEMANRGLWDSFVNLREAKRQLKKGLKSQEPCAGLPTKA
SHRISPALKILEPMWMDSNRTAALRASFLKCQKK"
ORIGIN
1atggaagactttgtgcggcaatgcttcaatccaatgatcgtcgagcttgc
ggaaaagaca
61atgaaagaatatggggaaaatccaaaaatcgaaacgaacaaattcgctgc
aatatgcact
121cacttagaggtctgtttcatgtattcggatttccactttattgatgaacg
aggcaaatca
181ataattgtagaatctggcgatccgaatgcattattgaaacaccgatttga
gataattgaa
241gggagagaccgaacgatggcttggacagtggtaaatagtatctgcaacac
cacaggagtc
301gataagcctaaattcctcccagatttgtatgattacaaggagaaccgatt
cattgaaatt
361ggagtgacaaggagggaagttcacacatactacctagaaaaggcaaataa
gataaaatca
421gagaagacacacattcacatattctcattcactggggaggagatggccac
caaagctgac
481tatacccttgatgaagagagcagagcaaggatcaaaaccaggttgttcac
tatcaggcaa
541gaaatggccaataggggtctgtgggattcctttcgtcaatctgagagagg
cgaagagaca
601attgaagaaaggtttgaaatcacaggaaccatgcgcaggcttgccgacca
aagcctccca
661ccgaatttctccagccttgaaaattttagagcctatgtggatggattcaa
accgaacggc
721tgccttgagggcaagctttctcaaatgtcaaaagaagtgaacgccagaat
tgagccattc
781atgaagacaacaccacgccctctcagattacctgatggtcctccttgctc
tcagcggtcg
841aaattcttactgatggattcccttaaattgagcatcgaagacccaagcca
tgagggagaa
901ggtataccgctatatgatgcaatcaaatgcatgaagacgttttttggttg
gaaagagccc
961aacattgtaaaaccacatgtaaaaggcataaatcccaactatctcttggc
ttggaagcag
1021gtgctggcagaactccaagacattgagaatgaagagacaatcccaaaaac
aaaaaacatg

1081aagaaaacaagccaactaaagtgggcactcggtgagaatatggcacctga
aaaagtggac
1141tttgaggactgcagagatgttagcgatctaagacagtatgacagtgatga
accagagccc
1201agatcattatcaagctggatccagagcgaattcaacaaagcatgcgaatt
gacagattcg
1261agttggattgaacttgatgaaataggagaagatgttgctccaattgagca
cattgcgagt
1321atgagaagaaactacttcacagcggaagtgtctcattgcagggcaactga
atatataatg
1381aaaggagtttatataaatacagccctgttgaattcatcctgtgcagccat
ggatgacttc
1441caattgattccaatgataagcaagtgcagaaccaaagaaggaagacggaa
gacaaattta
1501tatgggttcattataaaaggaagatcccatttgaggaatgataccgatgt
ggtaaatttt
1561gtgagcatggagttctccctcactgacccgaggctggaaccacacaagtg
ggaaaagtac
1621tgtgttctcgaaataggagacatgctcctacgaactgcaataggccaagt
atcaagatcc
1681atgtttctttatgtaagaaccaatgggacttccaagatcaagatgaaatg
gggcatggag
1741atgaggcgatgccttcttcaatccctccaacaaattgagagcatgattga
ggcagagtct
1801tctgtcaaagagaaagacatgaccaaggaattctttgaaaataaatcaga
aacgtggcca
1861attggggaatcacctaagggggtggaggaaagctctattgggaaggtgtg
tagaacatta
1921ttagcaaaatctgtattcaacagcctatatgcatctccacaacttgaggg
gttttcagct
1981gagtcgagaaagttacttctcattgttcaggcatttagggacaatctgga
acctgggacc
2041tttgatcttggggggctatatgaagcaattgaggagtgcctgattaatga
tccctgggtt
2101ttgcttaatgcatcttggttcaactccttccttacacatgcactgaaata
g//