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Biochemistry allows scientists to better understand how macromolecules affect humans. Macromolecules do things from making humans unique to providing energy. Biochemistry is important on global, local, and personal levels.
Biochemistry allows scientists to better understand how macromolecules affect humans. Macromolecules do things from making humans unique to providing energy. Biochemistry is important on global, local, and personal levels.
Biochemistry allows scientists to better understand how macromolecules affect humans. Macromolecules do things from making humans unique to providing energy. Biochemistry is important on global, local, and personal levels.
Roark Corson Ocean Lakes High School: Math and Science Academy
MACROMOLECULES AND YOU
Introduction I walk into Walmart, and a shiny container catches my eye. I move closer, wanting to get a better look. The container is full of protein, and the label reads, Build more muscle with this Whey Protein!. Having been through molecular biology, I knew a fair amount about proteins: how they are made, used, and their composition, but I knew almost nothing about what they do for the human body. Im left wondering if protein can really turn me into the muscular monster on the protein container, and resolve to find out more about protein, and macromolecules in general. Macromolecules are larger and more complex molecules that are normally created by the polymerization of smaller subunits; like using LEGO bricks to make a building. Macromolecules do things from making humans unique to providing energy for a walk around a building. For this reason, they are important to every human across the world, and the study of biochemistry allows scientists to better understand how they affect humans, and how to optimize them to do even more for us. Because the research can be applied to any human, it is of local and global importance, and biochemical research is important and needs to be done. Personally, this was important to me because I like both chemistry and biology, and biochemistry is a marriage of not just the names, but of the two disciplines. I also like to help people, and altering the basis of human life, the genome, is the best way to cure genetic issues, and is making rapid progress and will soon be implemented in everyday life. Biochemistry is important on global, local, and personal levels, and deserves to be researched and furthered due to its widespread applications.
MACROMOLECULES AND YOU
The question I set out to research was How do macromolecules affect the human body, and how can this information be used to help people? I also had five subquestions that helped me to focus on smaller areas of this larger question before putting it all together. The answer to this question does not have a definitive answer; instead it has some answers that have not been discovered yet, as experiments and research are still being done that will find more applications for macromolecules and further their use to humans. What I Know, Assume, and Imagine Before I started this research project, I knew about macromolecules in a very vague way. I knew what they were, and how they worked, but I knew nothing about their applications and the more specific knowledge that would be needed for this project. I had five sub-questions, which are: 1) What are the subsets of molecules that are part of the four larger macromolecule groups? 2) How are each of the macromolecules created and ingested by humans? 3) What is the relationship between macronutrients and macromolecules? 4) How are macromolecules altered both organically and synthetically? 5) Why are macromolecules essential to life? My knowledge mostly covered the first question, and I knew a little about the second question, but my work was mostly cut out for me. I designed these questions with a simple idea in mind: building up. I would start with the basics, like the types of macromolecules, and then work up the applications and why they are so important. The first question was mostly to set the groundwork for the rest of my research and make sure
MACROMOLECULES AND YOU
my current knowledge was accurate. The second and third question deal with how humans use macromolecules, both as regular macromolecules, and as macronutrients, which are energy providing nutrients for the human body. The penultimate question deals with both inorganic and organic alteration of macromolecules; an important topic for chemists, as some macromolecular structures need to be altered to be most effective. The final question is the largest one, and deals with the why of organic molecules: why do we need them? This is the answer to Does this research matter? because it proves that humans need macromolecules, and altering them can help many people. These subquestions guided my research, and helped me answer my umbrella question after my research was done. Story of the Search My search took about a month. I started by doing online research and referencing my biochemistry textbook when I needed help on a topic or when I needed some more information to flesh out my knowledge. This textbook became a great source of knowledge, as I knew it was reliable and covered every macromolecule, as well as their applications. I began by Googling macromolecules, and reading the simplest entries I could find in order to make my first post and make sure I knew the basics about macromolecules. When I found information that seemed like it was incorrect or I had not learned it before, I would verify it in the textbook to make sure it was true. Using the research, as well as the textbook to back up further research, I began to amass more research using the sub-questions to guide me along. I mostly used web sources, but I also used some journal articles that covered applications of the macromolecules and biochemistry in general. I was able to gather enough research to
MACROMOLECULES AND YOU
answer all of my sub-questions, and I began to write my blog posts; one for each question. I was getting closer and closer to being able to answer my umbrella question. At the start of my search, I sent an email to Mr. Bala Ramjee, an organic chemist by trade, to ask for an interview. He responded with a yes, but when I followed up, I got no response. This was one of my biggest failures, because Mr. Ramjee specializes in the applications of biochemistry, and he is currently working on nanomaterials. From this experience, I have learned a few things. First, I have learned that emailing several people a cover letter is much smarter and efficient. If I had done this, I might have been able to conduct an interview, but due to the lack of response so late into the timeline, I was not be able to do an interview. I will be sure to send my request to several people to increase my chances next time. I also learned how to make a cover letter that is appropriate to send to professionals. Next, I learned that it is important to follow up within a day or two in order to maintain contact with the person. I waited too long, and this could be the reason that I missed the opportunity, as he could be on vacation right now, unable to check email. Next time, I will follow up in a more punctual manner. One of my larger successes was having the biochemistry textbook, as that allowed me to fact check the research I got from the Internet, as well as gathering additional information that I could not easily find online. Another success was my sub-questions. They were broad enough to require a fair amount of research, but specific enough so I would not have to do unnecessary research just to check a box. The search ended with five blog posts, an interview post, and a whole host of research. What I Discovered
MACROMOLECULES AND YOU
There are four types of macromolecules: lipids, nucleic acids, carbohydrates, and proteins. Each of these macromolecules greatly affects the human body, and resides in every cell in every one of us. First, the basics of each macromolecule must be understood. There are two types of proteins, simple and conjugated. According to Moulton, simple proteins are only chains of any of the 20 amino acids. Conjugated proteins are more complex, and function in interaction with other functional groups such as carboxyl and carbonyl (Moulton, n.d.). Prosthetic groups are non-amino acids groups, and most are vitamins (Moulton, n.d.). There are two main nucleic acids, DNA and RNA, or deoxyribonucleic acid and ribonucleic acid (Nucleic Acids, 2013). DNA is the genetic material of the cell, and the sequence of nitrogenous bases creates variation in the human species (Nucleic Acids, 2013). RNA directs protein synthesis in the cell (Nucleic Acids, 2013). I learned all of this information in molecular biology this year, but it is still important for the reader to understand, as nucleic acids are arguably the most important macromolecule. Carbohydrates fall into one of three groups: monosaccharides, disaccharides, or polysaccharides (The Chemistry of Biology: Carbohydrates. , n.d.). Monosaccharides have the generic formula (CH2O)n, where n can be 3, 5, or 6, and are called trioses, pentoses, or hexoses (The Chemistry of Biology: Carbohydrates. , n.d.). Common examples of monosaccharides are glucose, galactose, and fructose. Disaccharides are two monosaccharides connected by a glycosidic bond, such as sucrose, lactose, or maltose, and formed by condensation reactions (The Chemistry of Biology: Carbohydrates. , n.d.). Polysaccharides are formed by the polymerization of monosaccharides to form a
MACROMOLECULES AND YOU
chain, and examples include glycogen and cellulose (The Chemistry of Biology: Carbohydrates., n.d.). There are three types of lipids: steroids, triglycerides, and phospholipids (Reusch, 2013). Steroids control hormonal balances in the human body, and act as signal senders and receptors (Reusch, 2013). Steroids also preserve the fluidity of the phospholipid membranes (Reusch, 2013). Triglycerides store energy, and when the bonds are broken, energy is released for the cell to perform actions (Reusch, 2013). Phospholipids form the phospholipid bilayer of the cell membrane, and control what enters and leaves the cell (Reusch, 2013). Every day, humans use each of the four macromolecules in vastly different ways. Part of my research involves applications of macromolecules, so it is important to understand the basic consumption and use of macromolecules in daily life. For example, humans use DNA from conception to death, as it stores the genetic information that makes humans unique. Carbohydrates are stored in the body in limited amounts, and are used for short-term energy, whereas fat is stored energy for later use. They are ingested in food and digested into small sugars that are broken into glucose or glucose itself is ingested (Gebel, 2011). Then, glucose is absorbed into the lining of the small intestine, and the blood-sugar level rises (Gebel, 2011). The human body cannot make carbohydrates. Fats are stored in special connective tissues called adipose tissue or fat depots (Ophardt, 2003). These depots also serve as cushion and provide structural support for organs like the heart, liver, and kidney (Ophardt, 2003). They insulate the body from heat, and the body cannot make them by itself, just like carbs. Humans do not ingest nucleic acids. RNA helps cells make proteins, and mRNA transfers genetic
MACROMOLECULES AND YOU
information outside the cell cells make proteins. DNA is passed onto children through gametes, which are synthesized in meiosis (Hendrickson, 2015). For proteins, if the amino acids aren't immediately used, the body can reconfigure them into glucose by stripping the nitrogen from the acid and using it for a nucleic acid, then the rest of the protein is turned into energy (Chernus and Skolnik, n.d.). This process uses water; so high protein intake can cause dehydration. Humans cannot synthesize essential amino acids, so they get them from proteins (Chernus and Skolnik, n.d.). I also researched macronutrients as an application for macromolecules. Macronutrients are nutrients that provide energy in the form of calories to the human body. Nutrients are needed for growth, metabolism, and other bodily functions. The prefix "macro" means large, so these macronutrients are needed in large quantities for the body to function. There are three macronutrients: protein, fat, and carbohydrates. Carbohydrates are needed as a main source of fuel for the body, and are easily used by the body, as all cells and tissues can use glucose for energy (Mckinley Health Center, 2014). Proteins are used for growth, tissue repair, creating essential enzymes and hormones, and keeping lean muscle mass (Mckinley Health Center, 2014). Fats are used for development and growth, and are the most concentrated energy source (Mckinley Health Center, 2014). They also absorb vitamins, A, D, E, K, and carotenoids, provide organ cushions, and maintain cell membranes (Mckinley Health Center, 2014). The relationship between macromolecules and macronutrients is complicated. The body cannot make macronutrients, but humans can make nucleic acids and nonessential proteins organically. Macromolecules and macronutrients are both large molecules, but there are more categories of macromolecules than macronutrients because
MACROMOLECULES AND YOU
the body is able to synthesize nucleic acids, and lipids other than fat are considered macromolecules. The use of macromolecules to create macronutrients is obvious, as glucose is used by every cell and tissue in the body. Both macromolecules and macronutrients are essential to the human body and everyday functions. The alteration of macromolecules is an important topic for biochemists. Because macromolecules are essential to the function of the human body, their fragility must be carefully understood. If a nucleic acid such as DNA is mutated, it can change the entire sequence of nitrogenous bases, and create genetic defections. Proteins can denature, which means a loss of protein structure and function (Protein Folding, 2013). This can be caused by a misfolding in the protein, which does not cause a complete loss of function, but enough to cause drastic issues (Protein Folding, 2013). For example, tau proteins are proteins that are very concentrated in the central nervous system, and when they denature, Alzheimer's can be caused (Protein Folding, 2013). Cystic Fibrosis is also caused by cystic fibrosis transmembrane conductance regulator (CFTR), a protein in the lungs, misfolding and causing Cystic Fibrosis (Protein Folding, 2013). Also, a deletion of phenylalanine, an amino acid, at the 508th position in CFTR is present in 70% of Cystic Fibrosis cases, another example of an organic alteration of macromolecules (Protein Folding, 2013). The coding of the nucleic acid is separated into codons, which are sequences of three nucleotides of RNA or DNA (Eggling, n.d.). Several organic alterations can happen, like Addition, Substitution, or Deletion, which are all organic alterations (Eggling, n.d.).
Synthetic alteration of nucleic acids can be done by splicing genes
(Eggling, n.d.). Basically, this means opening a section of DNA of one organism, and
MACROMOLECULES AND YOU
inserting part of the DNA of another organism (Eggling, n.d.). Certain enzymes can also break the phosphodiester bonds in the backbone of the DNA to open up the sequence (Eggling, n.d.). This allows humans to create hybrids using genetic engineering, and is very controversial, as it allows for large errors that could cause new diseases as bad as Cystic Fibrosis or Alzheimer's (Eggling, n.d.). Each of the macromolecules is required in large amounts for humans to perform daily functions. Proteins can be enzymes that catalyze biochemical reactions and are imperative to metabolism (Macromolecules Of Life, n.d.). They also have structural function such as actin and myosin in muscle (Macromolecules Of Life, n.d.). Proteins control immune responses, cell adhesion, and the cell cycle, and break into the essential amino acids humans cannot make (Macromolecules Of Life, n.d.). DNA is organized into chromosomes, and stores the genetic information that makes people unique (Macromolecules Of Life, n.d.). It makes up the genome, which can be analyzed to find defects and mutations for every individual (Macromolecules Of Life, n.d.). Carbohydrates and lipids store energy, short term and long term respectively (Macromolecules Of Life, n.d.). Carbohydrates make up structural components like chitin in fungi and cellulose in animals (Macromolecules Of Life, n.d.). The 5-carbon monosaccharide ribose is an important component of coenzymes like NAD and FAD and the backbone of RNA (Macromolecules Of Life, n.d.). Lipids form the cell membranes phospholipid bilayer, as well as signaling with hormones, and storing nutrients in the liver and other organs (Macromolecules Of Life, n.d.).
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MACROMOLECULES AND YOU
In conclusion, macromolecules affect the human body in a multitude of ways. Scientists have begun to use genetic engineering in order to cure diseases that arise from mutations in the genome, which is made of DNA, a nucleic acid. People can be helped using knowledge of macromolecules, such as providing food that has more carbohydrates for marathon runners so they can use the energy quickly. Macromolecules deserve to be researched, and can change the lives of people with genetic disease and improve our manipulation of the human body. This research is valuable to every human, as well as being a relatively undeveloped field for something with this many applications and the potential to save lives. I am very interested in them, and I would consider researching them further with possible experimentation for symposium and even my senior project.
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References Bettelheim, F. A. (2007). Introduction to organic and biochemistry. Belmont, CA: Brooks/Cole. Eggling, S. (n.d.). Nucleic Acid Alterations. Retrieved May 25, 2016, from http://dl.clackamas.edu/ch106-09/nucleic2.html Gebel, E. (2011, March). How the Body Uses Carbohydrates, Proteins, and Fats. Retrieved May 23, 2016, from http://www.diabetesforecast.org/2011/mar/howthe-body-uses-carbohydrates-proteins-and-fats.html Hendrickson, K. (2015, October 12). Why Humans Need Nucleic Acids. Retrieved May 23, 2016, from http://www.livestrong.com/article/383411-why-humans-neednucleic-acids/ Macromolecules Of Life. (n.d.). Retrieved May 26, 2016, from http://www.shomusbiology.com/macromolecules-of-life.html McKinley Health Center - Macronutrients: The Importance of Carbohydrate, Protein, and Fat - University of Illinois. (14, April 02). Retrieved May 24, 2016, from http://www.mckinley.illinois.edu/handouts/macronutrients.htm Moulton, G. E. (n.d.). The Chemistry of Biology. Retrieved May 23, 2016, from http://www.infoplease.com/cig/biology/proteins.html Nucleic Acids. (2013, May 05). Retrieved May 23, 2016, from https://www2.chemistry.msu.edu/faculty/reusch/virttxtjml/nucacids.htm Ophardt, C. E. (2003). Lipid Matabolism. Retrieved May 23, 2016, from http://chemistry.elmhurst.edu/vchembook/620fattyacid.html
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Protein Folding. (2013). Retrieved May 25, 2016, from http://chemwiki.ucdavis.edu/Core/Biological_Chemistry/Proteins/Protein_Structu re/Protein_Folding Reusch, W. (2013, May 05). Lipids. Retrieved May 23, 2016, from https://www2.chemistry.msu.edu/faculty/reusch/virttxtjml/lipids.htm The Chemistry of Biology: Carbohydrates. (n.d.). Retrieved May 23, 2016, from http://www.infoplease.com/cig/biology/carbohydrates.html M. Huang, C.-H. Hsu, J. Wang, S. Mei, X. Dong, Y. Li, M. Li, H. Liu, W. Zhang, T. Aida, W.-B. Zhang, K. Yue, S. Z. D. Cheng. Selective assemblies of giant tetrahedra via precisely controlled positional interactions. Science, 2015; 348 (6233): 424 DOI: 10.1126/science.aaa2421