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Proteomics-based identication of secreted protein dihydrodiol dehydrogenase as a novel serum markers of non-small cell lung cancer
Ling-Jin Huang a,, Sheng-Xi Chen a, Yan Huang b, Wan-Jun Luo a, Hai-He Jiang a, Qing-Hua Hu a, Peng-Fei Zhang c, Hong Yi c
a
Department of Cardiothoracic Surgery, Xiangya Hospital, Central South University, Changsha 410008, Hunan, PR China Department of Infectious Disease, Xiangya Hospital, Central South University, Changsha 410008, Hunan, PR China c Department of Central Laboratory, Xiangya Hospital, Central South University, Changsha 410008, Hunan, PR China
b
Received 21 February 2006; received in revised form 29 May 2006; accepted 11 June 2006
KEYWORDS
Dihydrodiol dehydrogenase; Secreted protein; Non-small cell lung cancer; Tumor marker
Summary Identication of secreted proteins of lung cancer could provide new candidates of serum biomarkers for cancer diagnosis and prognosis evaluation. In this study, non-small cell lung cancer (NSCLC) cell line A549 was cultured. Proteins in the conditioned medium of A549 were recovered and the proteome analysis was subsequently performed. Secreted proteins of A549 were identied using mass spectrometry and database search. Fourteen human proteins were identied, including peptidylprolyl cistrans isomerase A, manganese superoxide dismutase, peroxiredoxin 1, phosphatidylethanolamine-binding protein, glutathione S-transferase P, PGP9.5, alpha enolase, phosphoglycerate mutase 1, galectin-1 and dihydrodiol dehydrogenase (DDH). DDH was selected for further analysis using RT-PCR, immunoblotting, immunohistochemical staining and ELISA in NSCLC patients. Compared with normal lung tissues, higher DDH mRNA and protein expression level were found in 15 NSCLC cancer tissues (p < 0.05). DDH overexpression was identied to be located in cytoplasm and cell membrane by immunohistochemical staining in NSCLC tissue. The serum level of DDH was signicantly higher in NSCLC patients (n = 64) than nonmalignant lung tumor (n = 20) and healthy controls (n = 20) (p < 0.05). The results show that DDH was one of the secreted proteins in NSCLC. It can serve as a tissue marker and a novel serological marker of NSCLC. Identication of secreted proteins could be a feasible and effective strategy to search potential serum biomarkers of cancer. 2006 Elsevier Ireland Ltd. All rights reserved.
1. Introduction
Corresponding author. Fax: +86 731 4327332. E-mail address: drhuanglj@yahoo.com.cn (L.-J. Huang).
Secreted proteins of cancer cells can be shed into blood. Their serum levels may increase in the early stage of cancer, and correlate with cancer cell proliferation and/or
0169-5002/$ see front matter 2006 Elsevier Ireland Ltd. All rights reserved. doi:10.1016/j.lungcan.2006.06.011
88 secreted protein overexpression. As a result, secreted proteins may be used as potential serum biomarkers of cancer [1,2]. Well-known secreted protein serving as serum biomarkers include CEA for colon cancer, prostasin and human kallikrein 10 for ovarian cancer [3,4], cysteine-rich secretory protein-3 and prostate-specic antigen (PSA) for prostate cancer [5,6]. Secreted protein analysis, together with genomic approaches have facilitated identication of a number of serum biomarkers [7] for malignant tumors, such as macrophage inhibitory cytokine 1 in metastatic prostate, breast, and colorectal carcinomas [2], osteopontin and prostasin in ovarian carcinomas [4,8], tissue inhibitor of metalloproteinase-1 (TIMP-1) in pancreatic adenocarcinoma [9]. Another good example is showed in the investigation of nasopharyngeal carcinoma (NPC) cellsecreted proteomes using SDS-PAGE and matrix-assisted laser desorption/ionization-time of ight mass (MALDI-TOF MS), three serum biomarkers of NPC were identied which included bronectin, Mac-2-binding protein (Mac-2 BP), and plasminogen activator inhibitor 1 (PAI-1) [1]. We postulated that analysis of the secreted proteins of lung cancer cells may be an effective approach for delineating potential serum biomarkers. Lung cancer is the most common cancer and the leading cause of cancer-related death worldwide. The early diagnosis of lung cancer is critical for successful therapy. Serological biomarkers can play important roles in cancer screening, monitoring of cancer progression, treatment response and surveillance for recurrence [10]. Serum protein biomarkers, such as carcinoembryonic antigen (CEA), carbohydrate antigen 125 (CA-125), cytokeratin 19 fragment marker (CYFRA 21-1) are not ideal tools in detection of lung cancer due to their low specicity and/or sensitivity [11,12]. For more effective lung cancer diagnosis, we need to nd new biomarkers, which have higher specicity and sensitivity. Lung cancer is divided clinically into small-cell lung cancer (SCLC) and non-SCLC (NSCLC). NSCLC comprises more than 80% of lung cancers. In this study, human NSCLC cell line A549 was cultured and the secreted proteins in conditioned medium were analyzed by two-dimensional polyacrylamide gel electrophoresis (2D-PAGE) and MALDI-TOF MS. Secreted protein dihydrodiol dehydrogenase (DDH) was identied and conrmed. High DDH expression was detected in NSCLC cancer tissues. The serum level of DDH was evaluated in NSCLC patients, benign lung tumor patients and healthy individuals using enzyme-linked immunosorbent assay (ELISA) which indicated high serum DDH level in NSCLC.
L.-J. Huang et al. treated with DOCTCA (deoxycholatetricarboxylic acid) sediment method to recover the total protein. Added 0.1 mL 0.15% DOC (w/v) into per milliliter supernatant and mixed well, incubated on ice for 10 min, then added 50 L 100% TCA (v/v) per milliliter to the mixture, centrifuged at 20,000 g for 30 min, carefully discarded the supernatant, and air dry at last. Protein in medium of RPMI-1640 with 5% FBS was collected in the same way as the conditioned medium and used as negative control. Precipitated protein samples were resuspended in cell lysis buffer (8 mol/L urea, 4% CHAPS, 40 mmol/L Tris, 65 mmol/L DTT) and the supernatant was used for proteomic analysis. Cells left on the dishes were washed twice with PBS, and disrupted in cell lysis buffer for 30 min. The protein extracts were centrifuged at 20,000 g for 30 min and the supernatants were used for immunoblotting. Protein concentrations of samples were determined by the BCA protein assay reagent from Pierce (Rockford, IL, USA).
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Age (years) 56 50 50 45 12 14 16 10
Number 34 30 20 20
Compared with healthy control, p < 0.05. Compared with benign lung tumors, p < 0.05. Compared with healthy control, p > 0.05.
Immagescanner (Amersham Biosciences) and the digitalized gel images were normalized and comparatively analyzed using software PDQuest (Bio-Rad, CA).
phosphate dehydrogenase (GAPDH) was employed as internal control and amplied separately. The forward primer sequence of GAPDH was 5 -TGGGTGTGAACCATGAGAAGT-3 and reverse primer 5 -GAGGAGTGGGTGTCGCTGT-3 . All of the PCR reactions used a volume of 25 L. The PCR products were separated on 2% agarose gels and the bands were visualized with the ethidium bromide. The intensity of DDH and GAPDH bands was quantied by densitometric scanning (GIS-2020, Tanon, Shanghai) and the ratio of the DDH/GAPDH gene expression from each sample was calculated.
90 San Francisco, CA) according to the manufacturers instructions. The slides with 4- m sections of parafn tissue blocks, were dried at 60 C for 30 min, treated with xylenes then dehydrated in alcohol. Endogenous peroxidase was blocked with 3% H2 O2 . Microwave treatment of the slides was performed for 15 min in 0.01 mol/L citrate buffer (pH 6.0). After incubating the DDH antibody with the tissue at 1:200 dilutions, the HRP polymer was added, and after a wash step, the DAB chromogen is then added to visualize the antibody binding. Slides were counterstained with hematoxylin.
3. Results
3.1. Identication of proteins in conditioned medium
In this study, A549 was cultured in RPMI-1640 medium supplemented with low concentration (5%) of fetal bovine serum. It was better for cells propagation and might be better for cells secreting function. However, it would bring exogenous proteins into the conditioned medium samples. To identify the potential secreted protein spots, gels of conditioned medium and control medium were compared, and the specic protein spots in the conditioned medium gel were picked up. These protein spots were either secreted proteins of A549 or degraded products of bovine proteins. In order to identify A549-secreted proteins, we conned the taxonomy to mammalian species in database searching, so that proteins which belonged to Homo sapiens were secreted by A549 and others were bovine proteins. A total of 45 protein spots were identied and 28 belonged to bovine proteins. Seventeen protein spots were identied as human proteins which included 14 proteins (Table 2). On the gel of conditioned medium, the specic protein spot with an apparent pI 7.1 and molecular mass of 32 kDa was iden-
Table 2
Protein spots searched by Mascot software in database Accession codea P06733 P62937 Q6LEN1 Q06830 P30086 P09211 P09936 P63261 P09382 CAD34991 Q96E67 P48546 P52895 P18669 Mw /pI 47350/6.99 18098/7.82 22176/6.86 22324/8.27 20443/7.18 23583/5.43 23840/5.43 29678/5.50 14917/5.34 53597/8.36 40536/5.55 53964/9.09 37111/7.13 28769/6.85 Matched number 8 15 6 7 9 9 12 15 9 9 15 6 8 10 Coverage (%) 21 54 53 53 74 52 61 60 73 20 61 20 41 51 Function Metabolism Signal transduction Antioxidants Antioxidants Signal transduction Antioxidants Thiol protease Cytoskeleton Signal transduction Cytoskeleton Metabolism Metabolism Metabolism
Protein name Alpha enolase (ENO1) Peptidylprolyl cistrans isomerase A (PPIA) MnSOD Peroxiredoxin 1 (PDX1) Phosphatidylethanolamine-binding protein (PEBP) Glutathione S-transferase P (GSTP1-1) Ubiquitin carboxyl-terminal hydrolase isozyme L1 (PGP9.5) Gamma-actin Galectin-1 (GAL1) Sequence 299 from Patent WO0222660 ACTB protein Gastric inhibitory polypeptide receptor (GIPR) Dihydrodiol dehydrogenase 2 (DDH) Phosphoglycerate mutase 1 (PGAM1)
a
91
Fig. 1 Identication of DDH by peptide mass ngerprints. (A) Peptide mass spectrum was obtained by MALDI-TOF mass spectrometry. (B) The masses of eight tryptic peptides were matched with DDH by database searching. (C) The sequence of DDH is represented by single-letter code for amino acids. Sequence coverage by eight peptides is indicated by capital letters, which is 41% of full length.
tied as DDH by mass spectrometry (Fig. 1). Since it was known that DDH was located in cytoplasm and augmented expression of DDH was detected in NSCLC [1518], DDH was selected for further analysis.
the control medium were examined at the same time as control. As shown in Fig. 2, DDH were detected in conditioned medium and A549 cells, and no positive band was detected in the control medium.
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Fig. 2 Identication of DDH by immunoblotting: DDH band were positive in conditioned medium of A549 (A) and A549 cell lysate (A549), and negative in control medium (C). Compared with paired distant nonmalignant lung tissues (L), DDH expression were higher in NSCLC cancer tissues (T).
Fig. 4 Highly expressed DDH in NSCLC. The expression levels of DDH were compared by immunoblotting between lung (L) and cancer (C) tissues. GAPDH were served as internal control.
(p < 0.05). Same as DDH gene, it was found that DDH protein was highly expressed in cancer tissues identied by immunoblotting (p < 0.05) (Figs. 2 and 4).
cated that DDH might be one of potential serum biomarker for NSCLC.
4. Discussion
Currently, invasive techniques, such as bronchoscopy, and percutaneous ne-needle aspiration are still required to make the nal diagnosis of NSCLC [16]. Noninvasive methods, such as testing serum biomarker level of NSCLC showed variable sensitivity and specicity [1012]. However, compared to invasive methods, serum biomarker tests have great potential to facilitate the early detection, monitoring of lung cancer in a non-painful way. The analysis of the secreted proteins of lung cancer cells could provide new clues to identify potential serological biomarkers of lung cancer. In this study, a total of 14 human secreted proteins were identied. Some of these identied proteins were conrmed as secreted proteins in previous studies, it included PPIA [17], PGP9.5 [18], PEBP [19] and GAL1 [20], which were consistent with our study. Some of the identied secreted proteins in this investigation had been conrmed as tumor markers of NSCLC, which included PPIA [20,21], PDX1 [1,22], PGP9.5 [18,23,24], PGAM1 [25] and DDH [15,26]. In the previous study, PGP9.5 was identied in serum and found autoantibodies against PGP9.5 in the circulation from patients with lung cancer which suggested that PGP9.5 may have utility in lung cancer screening and diagnosis [18]. Serum concentration of secreted proteins were related with the
Fig. 3 RT-PCR analysis of DDH expression in NSCLC. (A) DDH expression in samples of NSCLC tissue and distant nonmalignant lung tissue of the same patient; (1) DNA marker, (2) GAPDH of cancer tissue, (3) GAPDH of lung tissue, (4) DDH of cancer, (5) DDH of lung. (B) Overexpression of DDH in NSCLC was detected (n = 15, p < 0.05).
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cell proliferation and/or its expression, so the secreted proteins which overexpressed would have more possibility to be serum biomarkers of lung cancer. Further investigation would be undertaken to seek new serum biomarkers from these identied proteins. DDH was a member of aldo-keto reductase superfamily; it was considered as cytoplasmic protein in lung, liver, kidney, prostate and mammary gland [27]. Overexpression of DDH in NSCLC has been shown in several previous study [1518], but those studies focused on detection of cytoplamic DDH [15,26,28,29], our study is the rst in the world to investigate DDH as a secreted protein. In this study, we revealed that DDH not only existed in conditioned medium of A549 cell, on the membrane of cancer cells of NSCLC, but also in the sera of NSCLC patients. DDH overexpression was conrmed in NSCLC in our investigation using RT-PCR, immunoblotting and immunohistochemistry. The serum DDH level was checked using indirect ELISA in this study to validate the probability of using DDH as serum biomarkers. The serum level of DDH was signicantly higher in NSCLC patients than nonmalignant lung tumor and healthy controls; thus, it might represent a new potential serum biomarker for NSCLC. However, the specicity and sensitivity of DDH in diagnosis of NSCLC need further investigation. DDH could divert polycyclic aromatic hydrocarbons (PAHs) trans-dihydrodiols to the deleterious o-quinones, which had the potential to cause covalent and oxidative DNA lesions, increasing the mutation of PAH-exposed lung cells. PAHs, as ubiquitous environmental pollutants and tobacco carcinogens, are implicated in the causation of lung cancer [28]. In human, four isoforms of DDH (DDH1DDH4) have been identied with monomeric mass of 36 kDa [27]. There is >97% identity in amino acid sequence. DDH1 and DDH2 was the major isoforms in NSCLC detected by RT-PCR and nucleotide sequencing [15,26]. Correlation between clinicopathological parameters and DDH expression in patients with NSCLC was evaluated, which indicated overexpression of DDH was a prognostic marker [15] and might serve as an early biomarker for patients with resectable stage I NSCLC [26]. In summary, identication of secreted proteins could be a feasible and effective strategy to search potential serum biomarkers of cancer. DDH represents a new diagnostic and prognostic factor in NSCLC, and can be used as a serum marker. Further investigation of other secreted proteins detected in this study, may reveal interesting results too.
Acknowledgements
The authors thank Zhi-Ling Huang for excellent technical assistance and Chang-Qing Xie and Ming-Qing Li for their critical reading of this article.
References
Fig. 5 Immunohistochemical staining of DDH in NSCLC. (A) Strong cytoplasmic staining of DDH in lung squmaous cancer and (B) strong cytoplasmic immunoreactivity of DDH in adenocarcinoma. (C) DDH shows strong cell membrane positivity.
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