Beruflich Dokumente
Kultur Dokumente
Trees
Classifying Eucalyptus subgenera for
habitat mapping using HyMap
hyperspectral remote sensing
Kara Youngentob, Xiuping Jia, Alex Held,
Luigi Renzullo and David Lindenmayer
Where the Wild
Things Are
An image from the children's book Where the Wild Things Are by Maurice Sendak
Presentation Outline
Background and introduction to the project
Overview of objectives
Classifying Eucalypt subgenera
Summing-up
Additional Thanks
Introduction
Field Site
Ringtail Possum
Photo by: Esther Beaton
Brushtail Possum
Photo by: Karen Marsh
Greater Glider
Photo by: Esther Beaton
Where do the animals live?
Heterogeneous Nature of
Landscapes
Heterogeneous Nature of
Landscapes
AVIRIS hyperspectral data cube over Vegetation Spectral Reflectance extracted from AVIRIS data
Moffett Field, CA
Vegetation spectra
from pixel
Study Objective #1
Re-establish Tumut Transects and collect presence and abundance data
for all arboreal marsupials
Canberra
Tumut
Approx
65k of
transects
Averaged 3-4
sites per nite
Images from left to right: Partially cleared plantation landscape, a baby greater glider, Eucalypt forest meets plantation.
Foliage chemistry
Study Objective #2
Leaf collection and analysis
Paddock Tree
Stuart helping to collect
more leaf samples
Foliage chemistry
Found 237 trees that were marked during the GG study (a little less than half), and collected an
additional 191 “matched” trees that were unmarked
Foliage chemistry
Laboratory Analysis
Laboratory Analysis
y = Xβ training
Results from Prediction Equations based on lab values for our training set
(Modified PLS with LOO Cross-validation)
Study Objective #3
Measure and map the variations in foliage chemistry using HyMap data
HyMap flight-plan
Remote Sensing
Black Tarp
Paddock Paddock Trees
Trees
Blue Tarp
Isolated Trees
Remote Sensing
Ground Truthing
Orange Tarp
Remote Sensing
Ground Truthing
Alex Held and Paul Daniel assisting with spectral data collection in the field
Remote Sensing
Collecting spectra
Remote Sensing
1
0.95
0.9 Field Spectra
0.85
swampwhole
0.8
0.75 stringywhole
0.7
applewhole
0.65
0.6 ashwhole
Reflectance
0.55 unknownstringypepwhole
0.5
pauciflorawhole
0.45
0.4 sallywhole
0.35
camwhole
0.3
0.25 pepwhole
0.2 vimwhole
0.15
0.1
0.05
0
350
424
498
572
646
720
794
868
942
1016
1090
1164
1238
1312
1386
1460
1534
1608
1682
1756
1830
1904
1978
2052
2126
2200
2274
2348
2422
2496
Wavelength (nm )
Fresh, whole leaf spectra (after de-stepping) taken with an ASD Fieldspec Pro
Eucalyptus spectra only (Averages)
Remote Sensing
Reflectances and Ratios to Average
sw ampleaves
stringyleavesw ithoutyoung
2.4
appleleaves
2.3
2.2 Field Spectra ashleaevs
2.1 unknow nstringypepleaves
2 paucifloraleaves
1.9
messmateleaves
1.8
1.7 sallyleaves
1.6 camleaves
Reflectance & Fraction
1.5 vimleaves
1.4
pepleaves
1.3
1.2 all averaged
1.1 all averaged Ratios
1 sw ampleaves
0.9
stringyleavesw ithoutyoung
0.8
appleleaves
0.7
0.6 ashleaevs
0.5 unknow nstringypepleaves
0.4 paucifloraleaves
0.3
messmateleaves
0.2
0.1 sallyleaves
0 camleaves
350
422
494
566
638
710
782
854
926
998
1070
1142
1214
1286
1358
1430
1502
1574
1646
1718
1790
1862
1934
2006
2078
2150
2222
2294
2366
2438
vimleaves
pepleaves
Wavelenghth
all averaged
Classification
Monocalypt Symphyomyrt
Darker green Typically
leaves, non-waxy, lighter green
brittle, lots of leaves, waxy,
volatile terpenes lots of lignin
Classification
Paddock Trees
Continumm removed HyMap vegetation spectra from tree pixel--top is “good” pixel, bottom is “bad” pixel.
Classification
Freeze-dried leaf absorbance spectra Tree canopy reflectance spectra from HyMap
(red and green lines). Blue line is (red and green lines). Blue lines are the
ANOVA F-score. Where the blue line bands selected by the Bhattacharyya
dips below the dotted black line, there is algorithm function in Multispec to provide the
significant difference between best separation of the two classes,
Monocalypt (n 318) and Symphyomyrt (n Monocalypt (n 56) and Symphyomyrt (n 49).
236) spectra. Performed to explore data. Used to select data for classification.
Classification
Classification results for Monocalyptus and Symphyomyrtus HyMap spectra based on a training
data set of 56 Symphyomyrts and 49 Monocalyptus and LOO cross-validation for testing data.
Summing--up
Summing
Re-establish original Tumut transects and collect presence and
abundance data to investigate the response of arboreal
marsupials to landscape change in a plantation environment
Explore relationship between tree choice and foliage chemistry by
collecting leaves in patches where GG were radio tracked and
paddock tree leaves under HyMap flightlines
Conduct a hyperspectral remote sensing flight over my study area
to investigate relationships between animal occurrence, habitat
type (dominant canopy subgenera) and foliage chemistry on a
landscape scale.