References

References Cited in Part I

Archer, D.B. (1983) The Microbiological Basis of Process Control in Methanogenic Fermentation of Soluble Wastes. Enzyme Microb. Technol. 5, 570-577. Aris, R. (1989) Boston. Elementary Chemical Reactor Analysis. Butterworths,

Atkinson, B. and Mavituna, F. (1991) Biochemical Engineering and Biotechnology Handbook. 2nd. Ed., Stockton Press, New York. Bailey, J.E. and Ollis, D.F. (1986) Biochemical Engineering Fundamentals. 2nd. Ed., McGraw-Hill, N.Y. Blanch, H.W. and Dunn, I.J. (1973) Modelling and Simulation in Biochemical Engineering. Adv. Biochem. Eng, 3, 127-165. Dekkers, R.M. (1983) State Estimation of a Fed-batch Baker's Yeast Fermentation., in: Modelling and Control of Biotechnological Processes, (Ed.: A.Halme) Pergamon Press, Oxford, 73. Denac, M., Miguel, A., Dunn, I.J. (1988) Modeling Dynamic Experiments on the Anaerobic Degradation of Molasses Wastewater. Biotechnol. Bioeng. 31, 110. Dunn, I.J. and Mor, J.R. (1975) Variable Volume Continuous Cultivation. Biotechnol. Bioeng. 17, 1805-1822. Dunn, I.J., Shioya, S. and Keller, R. (1979) Analysis of Fed Batch Fermentation Processes. Annals N.Y. Acad. ScL 326, 127-139.
Biological Reaction Engineering, Second Edition. I. J. Dunn, E. Heinzle, J. Ingham, J. E. Pfenosil Copyright 2003 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim ISBN: 3-527-30759-1

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Franks, R.G.E. (1966) Mathematical Modeling in Chemical Engineering. Wiley, New York. Franks, R.G.E. (1973) Modeling and Simulation in Chemical Engineering. Wiley, New York. Fredrickson, A.G., Megee, R.D., Tsuchita, HM. (1970) Mathematical Models for Fermentation Processes. Adv. Appl. Microbiol. 13, 419-465. Furukawa, K., Heinzle, E., and Dunn, IJ. (1983) Influence of Oxygen on the Growth of Saccharomyces cerevisiae in Continuous Culture. Biotechnol. Bioeng. 25, 2293-2317. Gujer, W., Zehnder, A.J.B. (1983) Conversion Processes in Anaerobic Digestion. Water Sci. Technol. 15, 127-167. Harder, A., Roels, J.A. (1982) Application of Simple Structured Models in Bioengineering. Adv. Biochem. Eng./Biotechnol. 21, 56-107. Hediger, T. and Prenosil, I.E. (1985) Microprocessor Automated Sequential Batch Process, Biotechnol. Progr.l, 216-225. Heinzle, E. and Lafferty, R.M. (1980) Continuous Mass Spectrometric Measurement of Dissolved H2, O2, and CO2 during Chemolitho- autotrophic Growth of Alcaligenes eutrophus strain H 16. Eur. J. Appl. Microbiol. Biotechnol. 11, 8-16. Heinzle, E., Furukawa, K., Dunn, I.J., and Bourne, J.R. (1983) Experimental Methods for On-line Mass Spectrometry in Fermentation Technology. Bio/Technology 1, 14-16. Heinzle E. and Dunn I. J. (1991) Methods and Instruments in Fermentation Gas Analysis, in Biotechnology, Vol 4, (Ed.: H.-J.Rehm and R.Reed). VCH, Weinheim, 27-74. Heinzle, E. and Saner, U. (1991) Methodology for Process Control in Research and Development, Ed. Pons, M.-N., in Bioprocess Monitoring and Control., Hanser, Munich. 223-304. Heinzle, E., Dunn, IJ. and Ryhiner, G. (1992) Modelling and Control for Anaerobic Wastewater Treatment, Adv. Biochem. Eng., Springer Verlag.

Biological Reaction Engineering, Second Edition. I. J. Dunn, E. Heinzle, J. Ingham, J. E. Pfenosil Copyright 2003 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim ISBN: 3-527-30759-1

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Imanaka, T., Aiba, S. (1981) A Perspective on the Application of Genetic Engineering: Stability of Recombinant Plasmid. Ann. N. Y. Acad. Sci. 369, 114. Ingham, J., and Dunn, I.J. (1991) "Bioreactor Off-Gas Analysis", in "Bioreactors in Biotechnology", Ed. A. Scragg, Ellis-Horwood, Chichester, 195-220. Keller, R. and Dunn, I.J. (1978), Computer Simulation of the Biomass Production Rate of Cyclic Fed Batch Continuous Culture, J. Appl. Chem. Biotechnol. 28, 508-514. Keller, R. and Dunn, I.J. (1978) Fed Batch Microbial Culture: Models, Errors, and Applications. J. Appl. Chem. Biotechnol. 28, 508-514. Keller, J., Dunn, I. J. and Heinzle, E. (1991). A Fluidized Bed Reactor for Animal Cell Culture, in preparation, Biotechnol. Bioeng. Luyben, W.L. (1973) Process Modeling, Simulation, and Control for Chemical Engineers. McGraw-Hill. Meister, D., Post, T., Dunn, I.J. and Bourne, J.R. (1979) Design and Characterization of a Multistage, Mechanically Stirred Column Absorber. Chem. Eng. Sci., 34, 1376. Moes, J., Griot, M., Keller, J., Heinzle, E., Dunn, I.J., and Bourne, J.R. (1985) A Microbial Culture with Oxygen-sensitive Product Distribution as a Tool for Characterizing Bioreactor Oxygen Transport. Biotechnol. Bioeng. 27, 482489. Moes, J., Griot, M., Heinzle, E., Dunn, I.J., and Bourne, J.R. (1986) A Microbial Culture as an Oxygen Sensor for Reactor Mixing Effects. Ann. N. Y. Acad. Sci. 469, 482-489. Mona, R., Dunn, I.J. and Bourne, J.R. (1979) Activated Sludge Process Dynamics with Continuous TOC and Oxygen Uptake Measurements. Biotechnol. Bioeng. 21, 1561-1577. Moser, A. (1988) Bioprocess Technology, Springer, N.Y. Mou, D.G. and Cooney, C.L. (1983) Growth Monitoring and Control through Computer-aided On-line Mass Balancing in a Fed-batch Penicillin Fermentation. Biotechnol. Bioeng. 25, 225-255.

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Prenosil, J., Dunn, I.J., and Heinzle, E. (1987) Biocatalyst Reaction Engineering, in: Biotechnology Vol.7a, (Ed.: HJ.Rehm and R.Reed) VCH, Weinheim, 489545. Roels, J.A. (1983) Energetics and Kinetics in Biotechnology. Elsevier Biomedical Press, Amsterdam. Ruchti, G., Dunn, I.J., Bourne, J.R. and v. Stockar, U. (1985) Practical Guidelines for Determining Oxygen Transfer Coefficients with the Sulfite Oxidation Method. Chem. Eng. J. 30, 29-38. Russell, T.W.F., Denn, M.M. (1972). Introduction to Chemical Engineering Analysis. Wiley, New York. Ryhiner, G., Dunn, IJ, Heinzle, E, Rohani S., (1992) Adaptive On-line Optimal Control of Bioreactors: Application to Anaerobic Degradation, J. BiotechnoL. 22, 89-106. Ryhiner, G., Heinzle, E, Dunn, IJ. (1991) Modelling of Anaerobic Degradation and Its Application to Control Design: Case Whey, in: Dechema Biotechnology Conferences Vol.3, (Ed.: Behrens, D. and Driesel, A.J.), 469-474. Saner, U., Bonvin, D., Heinzle, E. (1990) Application of Factor Analysis for Elaboration of Stoichiometry and its On-line Application in Complex Medium Fermentation of B. subtilis, in: Dechema Biotechnology Conferences Vol.3, (Ed.: Behrens, D. and Driesel, A.J.), 775-778. Satterfield, C.N. and Sherwood, T.K. (1963) The Role of Diffusion in Catalysis. Addison-Wesley, N.Y. Shioya, S., Dang, N.D.P. and Dunn, IJ. (1978). Bubble Column Fermenter Modeling: A Comparison for Pressure Effects. Chem. Eng. Sci., 33, 1025 1030. Tanaka, H. and Dunn, IJ. (1982). Kinetics of Biofilm Nitrification. BiotechnoL Bioeng., 24, 669 - 689. Tanaka, H., Uzman, S., Dunn, IJ. (1981). Kinetics of Nitrification Using a Fluidized Sand Bed Bioreactor with Attached Growth. BiotechnoL Bioeng., 23, 1683 - 1702. Ziegler, H., Meister, D., Dunn, IJ., Blanch, H.W., Russell, T.W.F. (1977). The Tubular Loop Fermenter: Oxygen Transfer, Growth Kinetics and Design. BiotechnoL Bioeng. 19, 507.

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References

Recommended Textbooks and References for Further Reading

Biochemical

Engineering

Aiba, S., Humphrey, A.E. and Millis, N.F. (1973) Biochemical Engineering. Academic Press, N.Y. Atkinson, B. and Mavituna, F. (1991) Biochemical Engineering and Biotechnology Handbook., 2nd. Ed., Stockton Press, New York. Bailey, I.E. and Ollis, D.F. (1986) Biochemical Engineering Fundamentals. 2nd. Ed., McGraw-Hill, N.Y. Blanch, H.W., Clark, D.S. (1996) Biochemical Engineering; Marcel Dekker, N.Y. Bu'lock, J. and Kristiansen Eds (1987) Basic Biotechnology Acad. Press, London 1987. Doran, P. M. (1995) Bioprocess Engineering Principles; Academic Press Limited: London. Glick, B.R., Pasternak, J.J. (1995) Molekulare Biotechnolgie; Spektrum, Heidelberg. Grady, C. P. L. and Lim H. C. (1980) Biological Wastewater Treatment, Marcel Dekker. Hastings, A. (1997) Population biology. Concepts and models; Springer, N.Y. Heinrich, R., Schuster, S. (1996) The Regulation of Cellular Systems; Chapman & Hall, New York. Klefenz, H. (2002) Industrial Pharmaceutical Biotechnology; Wiley-VCH. Ladisch, M.R. (2001) Bioseparations Engineering: Principles, Practice and Economics. Wiley, New York. Lee, J. M. (1992) Biochemical Engineering. Prentice Hall. Moo-Young, M., Ed. (1985) Comprehensive Biotechnology, Vols. 1-4 Pergamon Press, Oxford.

References

185

Moser, A. (1988) Bioprocess Technology.Springer, N.Y. Nielsen, J., Villadsen, J. (1994) Bioreaction Engineering Principles. Plenum Press. Pirt, S. John (1975) Microbe and Cell Cultivation. Blackwell Scientific Publ., Oxford. Rehm H.J. and Reed R. Eds (1988) Fundamentals of Biochemical Engineering, in Biotechnology, Vol. 2, VCH, Weinheim, Roels, J.A. (1983) Energetics and Kinetics in Biotechnology. Elsevier Biomedical Press, Amsterdam. Schiigerl, K., Bellgardt, H. (Eds.) (2000) Bioreaction Engineering. Springer, Berlin, Heidelberg. Schiigerl, K. (1987) Bioreaction Engineering. Wiley, New York. Schiigerl, K. (1994) Solvent Extraction in Biotechnology : Recovery of Primary and Secondary Metabolites. Springer, Berlin. Shuler, M. L., Kargi, F. (2002) Bioprocess Engineering. Basic Concepts; Prentice-Hall. Spier, R.E., Griffiths, J.B. (1985) Animal Cell Biotechnology. Vol. 1-3, Academic Press. Wang, D.I.C., Cooney, Ch.L., Demain, A.L., Dunnill, P., Humphrey, A.E., Lilly, M.D. (1979) Fermentation and Enzyme Technology. Wiley, New York. Wingard, L.B., Jr., Katschalski-Katzir and L. Goldstein Eds (1976-1983) Applied Biochemistry and Bioengineering, Vols. 1-4 Acad. Press, London.

Bioreactor Design and Modelling

Asenjo, J.A., Merchuk, J.C. (1995) Bioreactor system design; Marcel Dekker, N.Y. Hannon, B., Ruth, B. (1997) Modeling Dynamic Biological Systems; SpringerVerlag, New York.

186

References

Scragg, A.H. (1991). Bioreactors in Biotechnology. Ellis Horwood. Sinclair, C.G., Kristiansen, B., Bu'Lock, J.D. (1987) Fermentation Kinetics and Modelling. Open University Press, Milton Keynes. Schugerl, K. (1987) Bioreaction Engineering.Vol.1, John Wiley, Chichester. Subramanian, G. (1998) Bioseparation and Bioprocessing. A Handbook Volume II: Processing, Quality and Characterization, Economics, Safety and Hygiene, Wiley-VCH, Weinheim. van't Riet, K., Tramper, J. (1991) Basic Bioreactor Design. M. Dekker, New York. Vieth, W.R. (1994) Bioprocess Engineering, J. Wiley & Sons, N.Y. Webb, C., Black, G.M., and Atkinson, B. (1986) Process Engineering Aspects of Immobilized Cell Systems.Pergamon Press Ltd., Oxford.

Enzyme Engineering and Kinetics

Bisswanger, H. (2002) Enzyme Kinetics. Principles and Methods; Wiley-VCH. Buchholz, K., Kasche, V. (1996) Biokatalysatoren und Enzymtechnologie, VCH.Weinheim. Cornish-Bowden, A. (1979) Fundamentals of enzyme kinetics, Butterworth, London. Drauz, K., Waldmann, H. (1995) Enzyme Catalysis in Organic Synthesis. Volume I. VCH Weinheim. Drauz, K., Waldmann, H. (1995) Enzyme Catalysis in Organic Synthesis. Volume II. VCH, Weinheim. Fessner, W.-D. (1999) Biocatalysis - From Discovery to Application, Springer, Berlin. Godfrey, T., West, S. (1996) Industrial enzymology, Macmillan Press, London. Hayashi, K.and Sakamoto, N. (1986) Dynamic Analysis of Enzyme Systems, Japan Sci. Soc. Press, Tokyo, Springer Verlag, Berlin.

References

187

Kennedy J. F., Ed. (1987) Enzyme Technology, in Biotechnology Vol. 7a, VCH, Weinheim, Liese, A., Seelbach, K., Wandrey, C. (2000) Industrial Biocatalysis, Wiley-VCH. Scheper, T. (1997) Advances in Biochemical Engineering Biotechnology. New Enzymes for Organic Synthesis, Springer. Segel, I.H. (1975) Enzyme Kinetics: Behavior and Analysis of Rapid Equilibrium and Steady-state Enzyme Systems. Wiley, New York.

Metabolic Engineering
Lee, Papoutsakis (1999) Metabolic Engineering, Marcel Dekker: New York, Basel. Stephanopoulos, G. N., Aristidou, A. A., Nielsen, J. (1998) Metabolic Engineering. Principles and Methodologies, Academic Press: USA.

Chemical Reaction Engineering

Aris, R. (1989) Elementary Chemical Reactor Analysis. Butterworth Publ., Stoneham. Fogler, H. S. (1992) Elements of Chemical Reaction Engineering, PrenticeHall. Hagen, J. (1993) Chemische Reaktionstechnik, VCH: Weinheim. Ingham, J., Dunn, I.J., Heinzle, E., Prenosil, I.E. (2000) Chemical Engineering Dynamics: An Introduction to Modelling and Computer Simulation, VCH Verlagsgesellschaft mbH: Weinheim, Germany,. Levenspiel, O. (1999) Chemical Reaction Engineering. John Wiley & Sons, New York. Massart, D. L., Vandeginste, B. G. M., Buydens, L. M. C., de Jong, S., Lewi, P. J., Smeyers-Verbeke, J. (1997) Handbook of Chemometrics and Qualimetrics: Part A, Elsevier: Amsterdam.

188

References

Richardson, J. F., Peacock, D. G. (1994) Coulson & Richardson's Chemical Engineering. Volume 3: Chemical & Biochemical Reactors & Process Control, Pergamon, Trowbridge. Satterfield, C.N. and Sherwood, T.K. (1963) The Role of Diffusion in Catalysis, Addison-Wesley, New York.

Modelling and Simulation

Basmadjian, D. (1999) The Art of Modeling in Science and Engineering, Chapman & Hall/CRC: Boca Raton. Deaton, M. L., Winebrake, J. J. (1999) Dynamic Modelling of Environmental Systems, Springer: New York. Dodson, C. T. J., Gonzalez, E. A. (1995) Experiments in Mathematics using Maple, Springer-Verlag: Berlin, Franks, R.G.E. (1966) Mathematical Modeling in Chemical Engineering. Wiley, New York. Franks, R.G.E. (1972) Modeling and Simulation in Chemical Engineering. Wiley, New York. Russell, T.W.F., Denn, M.M. (1972). Introduction to Chemical Engineering Analysis. Wiley, New York. Ruth, M., Hannon, B. (1997) Modeling Dynamic Economic Systems, Springer Verlag, New York.

Dynamics and Control

Astrom, K.J. and Wittenmark, B. (1989). Adaptive Control. Addison-Wesley, Reading. Coughanowr D. R. and Koppel L. B. (1965) Process System Analysis and Control. McGraw-Hill, New York.

References

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Fish, N. M., Fox, R.L, and Thornhill, N.F. (1989) Computer applications in fermentation technology: Modelling and control of biotechnological processes. Elsevier, London. Halme, A. (1983) Modelling and Control of Biotechnical Processes. Pergamon Press, Oxford. Johnson, A. (1986) Modelling and Control of Biotechnological Processes. Pergamon Press, Oxford. Luyben W. L. (1973) Process Modeling, Simulation, and Control for Chemical Engineers, McGraw Hill, New York. Pons, M.-N., Ed.(1991) Bioprocess Monitoring and Control. Hanser, Munich. Snape, J. B., Dunn, I. J., Ingham, J., Prenosil, J. E. (1995) Dynamics of Environmentel Bioprocesses, VCH Verlagsgesellschaft mbH, Weinheim,. Stephanopoulos, G. (1984) Chemical Process Control: An Introduction to Theory and Practice, Prentice Hall. Weber. W. J., Jr., DiGiano, F. A. (1996) Process Dynamics in Environmental Systems, Wiley.