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Planta (2001) 212: 591±597

The early light-induced protein is also produced during leaf


senescence of Nicotiana tabacum
L. Binyamin, M. Falah, V. Portnoy, E. Soudry, S. Gepstein
Faculty of Biology, Technion, Israel Institute of Technology, Haifa, 32000, Israel

Received: 18 May 2000 / Accepted: 24 June 2000

Abstract. To better understand the genetic controls of Introduction


leaf senescence, a tobacco (Nicotiana tabacum L. cv.
SR1) mRNA that is up-regulated during senescence Leaf senescence, the ®nal stage of leaf development, is
was isolated by the cDNA-ampli®ed restriction frag- controlled in part by a program involving gene expres-
ment polymorphism method and the cDNA was sion (Becker and Apel 1993; Buchanan-Wollaston 1997;
cloned. The mRNA coded for the early light-induced Smart 1994; Humbeck et al. 1996; Gan and Amasino
protein (ELIP), a member of the chlorophyll a/b- 1997). The ensuing synthesis of particular proteins is
binding protein family that has been implicated in responsible for the degradation of essential macromol-
assembly or repair of the photosynthetic machinery ecules, profound alterations of cell structure and phys-
during early chloroplast development and abiotic stress. iology, the mobilization of hydrolytic products to other
A protein antigenically recognized by antibodies to parts of the plant, and the eventual death of the organ
ELIP appeared during senescence with kinetics similar (Thimann 1980; Nooden 1988; Guarente et al. 1998;
to those of its mRNA. The mRNA, designated ELIP- Weaver et al. 1998). The chloroplast appears to be an
TOB, was detected earlier when senescence was en- early target for senescence processes (Gepstein 1988).
hanced by leaf detachment and treatment with 1-ami- In order to understand the complex operations
no-cyclopropane-1-carboxylic acid, and was detected involved in cell death, it is essential to identify the
later when senescence was retarded by benzyladenine. important components of its genetic program, even those
However, no ELIP-TOB mRNA was seen in the dark that may not be strictly causal for senescence. One
even though senescence was accelerated under these approach is to isolate mRNAs that are up-regulated
conditions. Furthermore, water stress and anaerobiosis during senescence, and then predict their function by
stimulated the appearance of ELIP-TOB mRNA before homology to known gene products. The relationship of
losses of chlorophyll could be detected. We discuss the these proteins to senescence eventually can be determined
conditions that may lead to the up-regulation of ELIP- by other molecular, cellular and biochemical techniques.
TOB during senescence and speculate as to the role of With this objective in mind, di€erential screening and
the gene product in this terminal phase of leaf di€erential display techniques have resulted in the
development. identi®cation of a variety of senescence-associated genes
that provide greater insight into the processes related to
Key words: Abiotic stress ± Chloroplast ± Early light- cell death (Smart 1994; Buchanan-Wollaston 1997; Gan
induced protein ± Nicotiana (leaf senescence) ± and Amasino 1997). This in turn led to the suggestion
Senescence that the regulation of senescence involves several inter-
connected genetic pathways (Gan and Amasino 1997).
We have been identifying other senescence-associated
genes using an RNA ®ngerprinting technique based on
the method of ampli®ed restriction fragment polymor-
phism (cDNA-AFLP) (Bachem et al. 1996). The advan-
tage of this technique is that oligonucleotide adapters
Abbreviations: ACC ˆ 1-amino-cyclopropane-1-carboxylic acid; can be used as primer sites for the polymerase chain
BA ˆ benzyladenine; cDNA-AFLP ˆ ampli®ed restriction frag-
ment polymorphism-derived technique for RNA ®nger-printing;
reaction (PCR). As a result, the PCR conditions are
Chl ˆ chlorophyll; ELIP ˆ early light-induced protein; PCR ˆ more stringent, and PCR artifacts that are common in
polymerase chain reaction di€erential display are decreased (Bachem et al. 1996).
Correspondence to: S. Gepstein; For this study, tobacco leaves were chosen as the
E-mail: gepstein@tx.technion.ac.il; Fax:+972-4-8225135 experimental material. They show a predictable progres-
592 L. Binyamin et al.: Production of early light-induced protein during senescence

sion of senescence from lower to upper leaves, and many by including a single selective nucleotide at the 3¢ end (Eco RI and
factors involved in senescence have already been docu- Mse I + N) (where N represents A, C, G or T). This was followed
by selective AFLP ampli®cation using Eco RI and Mse I + NNN
mented. Furthermore, the loss of chlorophyll (Chl) is an
primers labeled by phosphorylating the 5¢ end with [c-33P]ATP.
early, easily measured, and accepted criterion for senes- Polymerase chain reaction was performed as follows: the ®rst cycle
cence in tobacco (Aharoni and Liberman 1979). Finally, was 30 s at 94 °C, 30 s at 65 °C and 1 min at 72 °C. In the following
this plant is amenable to a range of molecular tech- 12 cycles the annealing temperature was reduced by 0.7 °C for each
niques, including the production of transgenic plants. cycle. The ®nal 23 cycles were performed using the following
We show here that a tobacco mRNA, whose putative temperatures: 30 s at 94 °C, 30 s at 56 °C, and 1 min at 72 °C.
protein product has a high homology to the early light-
induced protein (ELIP), is up-regulated during leaf Gel electrophoresis
senescence. This mRNA (called ELIP-TOB) appears
earlier after addition of 1-amino-cyclopropane-1- The reaction mixtures of the PCR products were combined with an
carboxylic acid (ACC), which stimulates senescence, equal volume of 98% (v/v) formamide, 10 mM EDTA, 0.25%
and is prevented by benzyladenine (BA), which delays bromophenol blue, 0.25% xylene cyanol, heated for 3 min at 90 °C
senescence. Furthermore, the appearance of ELIP-TOB and immediately cooled on ice. A 2-ll portion of each sample was
resolved on a 6% (w/v) polyacrylamide sequencing gel. The PCR
mRNA is dependent on light, and is accelerated by reaction products, using the same selective primers from young and
stresses such as anaerobiosis and drought even before senescing leaves of tobacco, were resolved side by side. The gel was
Chl losses are detected. Thus, we show for the ®rst time then dried and exposed to New Kodak BioMax MR ®lm overnight
that ELIP is not only produced during greening in the at room temperature.
early stages of leaf development, but also during
senescence. We present the possibility that elevated Cloning of ampli®ed fragments
levels of ELIP-TOB mRNA at this later stage may be a
result, at least in part, of stress perception by leaf cells. Senescence-associated bands were cut from the dried gel, soaked in
50 ll sterile water and heated for 2 h at 65 °C. After a brief
centrifugation, 10 ll of the supernatant was transferred to another
Materials and methods tube. Re-ampli®cation of the recovered fragment was performed
with the same primers initially used for the selective AFLP reactions.
Plant material The temperature pro®le for PCR (30 cycles) was as follows: 30 s at
94 °C, 30 s at 56 °C, and 1 min at 72 °C. The PCR products were
Tobacco (Nicotiana tabacum L. cv. SR1) plants were grown in soil- separated on a 2% (w/v) agarose gel, then eluted and ligated to
containing pots in the greenhouse at an average temperature of pUC57 vector in order to transform competent DH5 alpha cells. To
25 °C under a 16-h photoperiod maintained with ¯uorescent lights. verify that the isolated fragment was indeed senescence-associated,
The plants were watered with tap water every 2 d. For studies of it was utilized as a probe for Northern blot analysis.
arti®cial senescence, fully expanded green leaves were removed from
plants that were approximately 8 weeks old and the base of the leaves
Hybridization of RNA blots
inserted into distilled water or aqueous solutions of ACC (1 mM) or
BA (0.1 mM). Anaerobic conditions were obtained by submerging
detached leaves from 8-week-old plants under water. Water stress Fifteen micrograms of total RNA from young and senescing leaves
was accomplished by withholding water from 8-week-old plants for was denatured with glyoxal, subjected to electrophoresis on a 1%
10 d before leaf removal. The progression of senescence was (w/v) agarose gel, and transferred to a Zeta-Probe GT membrane
determined by comparing Chl content of the experimental material (Bio-Rad) in 20 ´ SSC (20 ´ SSC ˆ 3 M NaCl, 0.3 M sodium
to that of green, fully expanded leaves using the method of Moran citrate, pH 8.0) as instructed. For preparation of probes, plasmid-
(1982). The various stages of senescence were designated as: G2, transformed cells containing the DNA fragment of interest were
100% (Chl content); G1, 80%; GY, 60%, Y1, 50%; Y2, 25%. cultured overnight in 5 ml LB (Sambrook et al. 1989) that
contained 100 lg/ml ampicillin at 37 °C. After plasmid isolation,
the fragment was then ampli®ed under the same conditions as those
described for the ampli®cation of DNA fragments from dried gels.
Preparation of poly(A)+RNA and the synthesis of cDNA
The fragment was eluted from the agarose gel and labeled by the
random primer labeling technique using [32P]dATP as described in
Leaves were frozen in liquid nitrogen and stored at )80 °C until Sambrook et al. (1989). Hybridization of RNA blots was performed
use. Total RNA was extracted according to the method of Puissant overnight in a mixture of 6 ´ SSC, 0.5% (w/v) SDS, 50% (v/v)
and Houdebine (1990). The concentration of RNA was determined formamide, 0.1 mg/ml of sonicated and denatured salmon sperm
spectrophotometrically and resolved on agarose gels to evaluate DNA, and 2 ´ 106 cpm/ml of probe at 60 °C. After hybridization,
quality. Polyadenylated RNA was prepared using the PolyATract the blot was washed successively with 2 ´ SSC, 0.1% (w/v) SDS for
RNA Isolation System (Promega). Double-stranded DNA was 15 min at 55 °C, and 1 ´ SSC, 0.1% (w/v) SDS for 15 min at 55 °C,
synthesized with a cDNA Synthesis Module (Amersham) with an and 0.5 ´ SSC, 0.1%(w/v) SDS for 15 min at 55 °C.
anchored oligo dT25 that enabled the production of a cDNA library
containing a high percentage of full-length cDNA clones. The
yields of cDNA were estimated by the incorporation of [32P]dATP. Immunoblots

Fifty micrograms of total leaf protein in bu€er containing SDS was


Treatment of cDNA for AFLP analysis separated by PAGE and blotted as described previously (Dumbro€
and Gepstein 1993). The blots were exposed to antibodies elicited
Samples (100 ng) of double-stranded cDNA were digested with against tobacco ELIP (produced and provided by Prof. K.
Eco RI and Mse I restriction enzymes (2.5 U each) and ligated to Kloppstech), washed, and then treated with goat anti-rabbit IgG
Eco RI/Mse I adapters as described in the AFLP Analysis System I conjugated to peroxidase (BioRad). Binding was visualized by
kit protocol (Gibco BRL). The ligated fragments were preampli®ed treatment with peroxidase substrate.
L. Binyamin et al.: Production of early light-induced protein during senescence 593

Results tobacco plants were transferred to darkness for 20 d, and


the ELIP-TOB mRNA levels of senescing leaves from
Using the cDNA-AFLP technique, we isolated and these plants were compared with senescing leaves from
cloned a 247-bp cDNA that binds to an mRNA of similarly aged plants that remained in the light (Fig. 3B).
approximately 800 bp and that increases during senes- After 20 d in the dark, the mRNA for ELIP-TOB could
cence. This cDNA is a fragment with a high similarity not be detected in the senescent leaves, but it was seen in
(79%) to the ELIP family of proteins, nuclear-encoded senescent leaves of plants in the light even though the
chloroplast proteins, whose appearance is dependent on light-treated leaves chosen showed the same degree of
the presence of light (Meyer and Kloppstech 1984; Chl loss as those in the dark. In another experiment,
Grimm and Kloppstech 1987). The region of the detached leaves were incubated in the light until the GY
deduced ELIP amino acid sequence from tobacco is stage and then placed in the dark for 2 d longer (Fig. 3C).
homologous to the most conserved region of ELIPs Although ELIP-TOB mRNA was present at the GY
from pea, soybean and Arabidopsis (Fig. 1). Because the stage (Fig. 2B), the mRNA was undetectable after dark
amino acid sequence has a high homology to ELIPs, we incubation even though only 50% of the Chl remained
called the isolated fragment ELIP-TOB. (stage Y1); ELIP-TOB mRNA was clearly present at this
As shown in Fig. 2A, the ELIP-TOB cDNA bound same stage in light-treated leaves (Fig. 3C).
to an mRNA that appeared when Chl levels had We also studied the e€ect of certain hormones that
decreased by about 40% (GY). The mRNA levels regulate senescence on the levels of ELIP-TOB mRNA
increased until Chl levels were 50% or less than the in green, detached leaves. A northern blot (Fig. 4)
original value (Y1). A northern blot was also performed showed that treatment with ACC, the precursor of
using RNA from detached leaves that began to senesce ethylene, clearly increased the mRNA after only 2 h,
within 1 to 3 d (Fig. 2B). The trend is similar to that of and the level remained high for 10 d. On the other hand,
the intact leaves that age more slowly, but the ELIP- the synthetic cytokinin, BA, delayed the increase in
TOB mRNA appeared only 1 d after detachment, even ELIP-TOB mRNA until about day 3, and only at day 5
before Chl levels began to decline. In fact, it was possible did the level of this mRNA approach that of the
to detect an increase in the mRNA only 4 h after leaf control.
removal (see Fig. 4). As Chl content decreased, there Expression of ELIPs has been associated with certain
was a striking enhancement of this mRNA (Fig. 2B). stresses (Adamska et al. 1992; Potter and Kloppstech
To determine if the ELIP protein was produced 1993; Adamska 1997). To compare mRNA levels of
during leaf senescence, antibodies were obtained in ELIP-TOB with those of other plants under stress, we
order to run immunoblots. The results (Fig. 2C) indicate exposed detached tobacco leaves to anaerobic condi-
that ELIP protein is detectable in the tobacco leaves tions (Fig. 5A). Chlorophyll levels decreased at a slower
after Chl levels have decreased about 40%. rate than leaves in air, as seen previously for pathogen-
To test whether the appearance of ELIP-TOB mRNA induced programmed cell death (Mittler et al. 1996), but
during senescence is dependent on light, detached tobacco steady-state levels of ELIP-TOB mRNA increased
leaves were aged in the dark, and the steady-state levels of markedly by 1 d after the oxygen stress and remained
this mRNA were estimated by Northern blots (Fig. 3A). elevated. Levels of ELIP-TOB mRNA in controls
There was no detectable mRNA from the ELIP-TOB reached a maximum only at day 5 (Figs. 2B, 4).
gene in leaves incubated in the dark compared with those The plants were also subjected to a drought stress
in the light, even though the dark treatment resulted in a (Fig. 5B). There was a marked increase in ELIP-TOB
more rapid loss of chlorophyll. This experiment strongly mRNA in leaves of plants without water for 10 d,
suggests that the increased levels of ELIP-TOB mRNA whereas this mRNA was undetectable in control leaves
during senescence are dependent on light. of the same age from plants that had sucient water.
To further examine the light requirement for the The water stress resulted in an elevation of ELIP-TOB
senescence-induced up-regulation of ELIP-TOB, intact mRNA levels before Chl decreases could be measured.

Fig. 1. Alignment of ELIP amino acid sequences. Amino acid Arabidopsis (Arb-Sep1) (accession number AAF61625). Dashes
sequences deduced from the corresponding partial cDNA sequence indicate the gaps inserted to allow optimal alignment. The black
of ELIP-TOB are compared with the ®rst transmembrane domain of boxes indicate identical residues and gray boxes indicate conservative
ELIP proteins from soybean (Soy) (accession number JC 5876), pea substitutions Alignment of ELIPs and Sep was carried out using the
(Pea) (accession numbers P11432, SO1056), and Arabidopsis (Arb) multiple alignment program, CLUSTLAW
(accession number 88391). Also shown is the sequence of Sep1 from
594 L. Binyamin et al.: Production of early light-induced protein during senescence

Fig. 2 A±C. Steady-state levels of ELIP-TOB mRNA and ELIP each lane. C Western blot, using polyclonal ELIP antibodies. Total
protein during senescence of tobacco leaves. A Northern blot of total protein was extracted from detached leaves at the indicated stages of
RNA, using leaves from a mature tobacco plant. Greener leaves (G2, senescence. Location and intensity of the antigen are indicated by the
G1) were removed from the top of the plant; more-yellow leaves (YG, peroxidase reaction. Stages of senescence, as determined by chloro-
Y1) are from the bottom. B Northern blot of total RNA from phyll levels, are indicated at the bottom of each lane. Stages: G2,
detached leaves incubated in the light on water-soaked ®lter paper. 100% of the chlorophyll of a fully expanded green leaf; G1, 80%; GY,
Time after detachment is indicated at the top of each lane; stages of 60%; Y1, 50%; Y2, 25%. Total RNA, as indicated by methylene blue
senescence, as determined by Chl levels, are indicated at the bottom of staining, is shown below the lines in A and B

Fig. 3A±C. E€ects of light and darkness on the appearance of ELIP- 20 d in continuous darkness (D) or continuous light (L). C Northern
TOB mRNA. A Northern blot of total RNA extracted from detached blot of total RNA extracted from detached leaves (initially at GY
leaves at times indicated at the top of each lane. Leaves were stage) that had been incubated for a further 2 d in the dark (D) or
incubated in continuous darkness (D) or in continuous light (L). light (L). In all panels, total RNA, as indicated by methylene blue
B Northern blot of total RNA extracted from mature, fully expanded staining, is shown below the line. Stages of senescence are indicated at
tobacco leaves (0) or from leaves at the same position after a further the bottom of each lane (see Fig. 2 for an explanation)

Discussion Chl decreased in tobacco leaves (Fig. 2). The cDNA-


AFLP-derived probe used to identify the mRNA is a
Using the cDNA-AFLP technique to search for mRNAs fragment whose putative translation product has a high
that are up-regulated during senescence, we found a homology to ELIPs (Fig. 1), members of a family of
particular mRNA whose steady-state level increased as light-dependent, stress-induced Chl-binding proteins
L. Binyamin et al.: Production of early light-induced protein during senescence 595

(Kolanus et al. 1987). The ELIP-TOB aligns well with


segment I of the three potential transmembrane seg-
ments of the full-length ELIP protein (Fig. 1) (Grimm
et al. 1989; Green and Kuhlbrandt 1995). Furthermore,
the approximately 800-bp size of the RNA (data not
shown) corresponds to the 24- to 25-kDa size of the
putative translated ELIP protein (Meyer and Klopps-
tech 1984; Scharnhorst et al. 1985). The light require-
ment for ELIP-TOB gene expression (Fig. 3) implies
that a similarity also exists in the regulatory region of
the gene (Blecken et al. 1994). The probe for ELIP-TOB
presumably would not hybridize with the mRNA for
Seps (Fig. 1), stress-related members of the ELIP group
from Arabidopsis described by Heddad and Adamska
(2000), since Seps have only two transmembrane do-
mains and are induced by light stress with di€erent
kinetics as compared with ELIPs.
Up to now, ELIPs were reported to be associated
mainly with chloroplast biogenesis during leaf greening
(Meyer and Kloppstech 1984; Grimm et al. 1989) and
during environmental stresses, such as high light (Klopps-
tech et al. 1991; Adamska et al. 1992, 1993), UV-A
(Adamska et al. 1992), temperature (Adamska and
Kloppstech 1994), and drought (Ouvrard et al. 1996).
Humbeck et al. (1996) reported that under light stress,
ELIP expression is independent of the developmental
stages of barley ¯ag leaves, and that after the onset of
Fig. 4. E€ect of senescence-modifying agents on the appearance of
senescence ELIP mRNA and protein still accumulate. We
ELIP-TOB mRNA. Detached tobacco leaves were incubated in report here that both the mRNA for this protein and a
continuous light on ®lter paper soaked in distilled water, 1 mM ACC protein that is recognized by ELIP antibodies are up-
or 0.1 mM BA. Time after detachment is indicated on the left. regulated during the natural senescence of attached leaves
Methylene blue staining for total RNA (approximately equal for all (Fig. 2) even under low light intensity. Furthermore,
treatments) has been omitted in order to simplify the ®gure enhancement of senescence by detaching the leaf
(Thimann 1980; Fig. 2) or by addition of ACC (Gepstein
and Thimann 1981; Grbic and Bleecker 1995) leads to an

Fig. 5A,B. E€ect of anaerobiosis and drought on the appearance of left). The ELIP-TOB mRNA from mature green leaves (G2) removed
ELIP-TOB mRNA in tobacco leaves. A Northern blot using total from plants watered normally during the 10 d period (10d) is shown in
RNA from detached leaves submerged in distilled water and incubated the third lane (to the right of the dotted line). The RNA from a
in continuous light. The RNA was extracted at times indicated above yellowing leaf (Y1) from a watered plant (fourth lane from the left) is
each lane. Stages of senescence are indicated at the bottom of each used to show normal induction during senescence. In both panels, total
lane. B Levels of ELIP-TOB mRNA from mature green leaves (G2) of RNA, as indicated by methylene blue staining, is shown below the line.
plants before (0) or 10 d after water deprivation (10d) (two lanes on the See Fig. 2 for an explanation of the senescence stages
596 L. Binyamin et al.: Production of early light-induced protein during senescence

up-regulation of the ELIP-TOB mRNA, whereas retar- Alternatively, ELIP may help to maintain chloroplast
dation of senescence by BA (van Staden et al. 1988; Smart function during senescence by a process similar to that
1994) delays this up-regulation (Fig. 4). occurring at chloroplast development ± the addition of
It appears, however, that ELIP is not essential for the Chl to proteins in the membrane (Adamska 1997).
Chl loss that is characteristic of the senescence syn- However, other simultaneously occurring degradative
drome. This conclusion is based on the absence of ELIP- processes eventually overcome this function. As a result,
TOB mRNA in the dark in attached or detached leaves, one might speculate further that the presence of ELIP
even though senescence is accelerated under these only in the light may help account for the well-known
conditions (Fig. 3). What is more, this mRNA is up- retardation of senescence by illumination of detached
regulated by anaerobiosis and water stress even before leaves.
decreases in Chl can be detected (Fig. 5). It is possible
that the appearance of ELIP-TOB mRNA in isolated We are grateful to Prof. Klaus Kloppstech (University of
leaves before the loss of Chl is due to a mechanical stress Hannover) for providing tobacco ELIP antibodies. Thanks also
associated with detachment. Interestingly, mRNAs of to Prof. Bernard Rubinstein for discussions during the preparation
some other members of the chlorophyll a/b-binding of this manuscript.
protein (CAB) family have kinetics opposite to those of
ELIP (Adamska and Kloppstech 1991; Bei-Paraskevo-
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