Genes encoded gag: capsid protein (gp24), matrix protein, nucleic acid binding pol: reverse transcriptase (RT), integrase, protease env: surface (gp 120), and transmembrane (gp 41) glycoproteins tat: transcription activator nef: alters t cell signaling, essential for pathogenicity Replication Cycle gp 120 binds CD4, while gp 41 facilitates fusion and entry, RT synthesizes complemantary DNA and degrades RNA template, then it makes the positve DNA strand (error prone), dsDNA circularized and integrated randomly into genome (provirus). Two modes of replication: provirus replicated passively as T-cell replicates activated in lytic replication where mRNA is synthesized protease processes/cleaves poly-proteins source/ transmission contact with mucusol surfaces or fluids, blood, prior STD increases risk Disease Acute phase: detected by PCR, viral load high, CD4 cells low, seroconversion occurs 3 week symptoms (URI, lymphadenopathy, rash) occur 2-6 post infection Asymptomatic phase: active immune response, high CD4 turnover with steady-state viral load AIDS: below 200 CD4 and TB, Kaposi's, HPV, candida thrush, pneumocystis pneumonia no human disease Epidemiology Lab Diagnosis ELISA- dectects antibody in blood (false positives and doesnt detect recent infection) Western Blot: detects antibody needed for confirmation RT-PCR- for viral load vacuolated "foamy" cells Treatment treat when CD4 is below 500 Prevention Notes HIV-1- from chimps HIV-2- lower risk of transmission, lower viral load, slower to progress to AIDS first retrovirus isolated from humans !"#$%&'$()") Retrovirus Notes all are enveloped diploid positive sense ssRNA, the RNA contains LTR with sticky ends recognized by integrase for insertion, and also they regulate gene expression. Simple genome incodes just gag, pol, env while complex encodes accesory genes as well. Nucleocapsid contains reverse transcriptase, integrase, tRNA replication primers Rous Sarcoma Human T-cell Leukemia Virus enveloped (complex) enveloped (complex) proto-oncogens directly cause cellular transformation, rapid onset Tax- transcriptional regulator to causes host cell to grow, indirectly causes cellular transformation, very slow (30 years) HTLV-1- acute T cell lymphocitic lymphoma which is neoplasia of CD4 cells, usually fatal HTLV-2- atypical hairy cell leukemia HTLV-5-in cutaneous lymphoma infects chickens used for research !"#$%&'$()") all are enveloped diploid positive sense ssRNA, the RNA contains LTR with sticky ends recognized by integrase for insertion, and also they regulate gene expression. Simple genome incodes just gag, pol, env while complex encodes accesory genes as well. Nucleocapsid contains reverse transcriptase, integrase, tRNA replication primers