serialplot.

m
function
serialplot(
)
%%%%%%%%%%%%%%%%%%%%%%%%
% This function plots data received from the serial port in real time,
kind
% of like an oscilloscope. Data is read from the input buffer every second
% and plotted. Plotting each sample individually is too slow for a high
% sampling rate (like 4ms or so). Once a complete page is displayed, the
% data is cleared and plot is reset.
% The Y axes is adjusted dynamically, disable it if you want.
% To stop the script cilck on the plot figure, the script will stop at the
% end of the current page. You can also initialize Total_Page_Limit to
some
% other value if you only want say 10 pages to be plotted.
% Timeout Warning: If data was not received via the serial port, matlab
% issues a timeout warning, you can exit on this too.
% Author: Govind Mukundan.
% Copyright: You are free to do whatever the heck you want to do with
% this file, except kill me.
% Revision: 1.0 $ $Date: 2012/08/21
%%%%%%%%%%%%%%%%%%%%%%%%




clear all;
close all;
newobjs = instrfind ; fclose(newobjs); % closes all open serial ports
incease they were not closed properly before.


%%%%%%%%%%%%%%%%%%%%%%%%
% Plot/Data Settings %
%%%%%%%%%%%%%%%%%%%%%%%%
% sampling rate = 4ms (250 sps), display 5s per page
Fs = 250;
Seconds_Per_Page = 5;
X_Limit = Fs * Seconds_Per_Page;
Total_Page_Limit = 100;
% Range of values from 0 to 50
Y_Limit_High = 50;
Y_Limit_Low = 0;
x = 0;
figure('WindowButtonDownFcn',@myCallback,'Units','normalized','Position',[
0 0 1 1]); %set callback for stopping image
%figure('Units','normalized','Position',[0 0 1 1]); % Maximizes the figure
hLine = plot(nan,'-o'); %# Initialize a plot line (which isn't
displayed yet because the values are NaN)
axis auto;
xlim([0,X_Limit]); % static limits are better than auto see:
http://undocumentedmatlab.com/blog/plot-performance/
% ip data is of the format : +ABCD-+FFFF-+.... i.e. 6 characters per
% sample.
Ip_Data_Size = 6;


%%%%%%%%%%%%%%%%%%%%%%%%
% Serial Port Settings %
%%%%%%%%%%%%%%%%%%%%%%%%
s = serial('COM31'); %assigns the object s to serial port
set(s, 'InputBufferSize', Fs*Ip_Data_Size); %number of bytes in input
buffer
set(s, 'FlowControl', 'hardware');
set(s, 'BaudRate', 19200);
set(s, 'Parity', 'none');
set(s, 'DataBits', 8);
set(s, 'StopBit', 1);
set(s, 'Timeout',10);
disp(get(s,'Name'));
prop(1)=(get(s,'BaudRate'));
prop(2)=(get(s,'DataBits'));
prop(3)=(get(s, 'StopBit'));
prop(4)=(get(s, 'InputBufferSize'));
disp(['Port Setup Done!!',num2str(prop)]);
fopen(s); %opens the serial port




%%%%%%%%%%%%%%%%%%%%%%%%
% Init Variables %
%%%%%%%%%%%%%%%%%%%%%%%%
n=0;
num = zeros(1,Fs);
t = 0;




disp('Running');
while(n < Total_Page_Limit)
clf; % clear current figure (refresh the polt)
xlim([0,X_Limit]); ylim([Y_Limit_Low,Y_Limit_High]); % static
limits
grid on;
hold on;
disp('refresh');
while(t < X_Limit) %Runs for 200 cycles - if you cant see the symbol,
it is "less than" sign. so while (t less than 200)
% read 1s worth of samples = 250 * 6
index = 1;
num_index = 1;
% Handle timeout during read
lastwarn(''); % reset lastwarn
try
a=fread(s,Fs*Ip_Data_Size,'char'); %read 1s data
if(~isempty(lastwarn))
error(lastwarn)
end
catch err
disp('Timeout occurred, exiting');
fclose(s); %close the serial port
return; % Stop Script
end
%a=fread(s,Fs*Ip_Data_Size,'char'); %read 1s data
while(index < length(a) - 4) % get 1s of ADC samples from the text
data
if(a(index) == '+')
% disp(index);
b=a(index+1:index+4,1); %reads the data from the serial
port and stores it to the matrix a
%a=max(a); % in this particular example, I'm plotting the
maximum value of the 256B input buffer
%disp(a);
%x =[x a]; % Merging the value to an array, this is not
very computationaly effective, as the array size is dynamic.
%Consider pre allocation the size of the
array to avoid this. But beware, You might loose some important
%data at the end!
% a contains 4 ascii chars rep the hex no
windowbuttondownfcn
a_dec = hex2dec(b);
num(num_index) =
16*16*16*a_dec(1)+16*16*a_dec(2)+16*a_dec(3)+a_dec(4);
num_index = num_index + 1;
index = index +4;
end
index = index +1;
end
temp = max(num);
Y_Limit_Low = temp - 150;
Y_Limit_High = temp + 150;
ylim([Y_Limit_Low,Y_Limit_High]);

plot(t+1:t+num_index-1,num(1,1:num_index-1));
t=t+Fs;
drawnow; %# Force the graphics to update immediately, if you dont
do this plot will be executed only at teh end of the loop
end
global serial_exit ;
if(serial_exit == 1)
fclose(s); %close the serial port
return; % Stop Script
end
n = n+1;
t = 0;
end
fclose(s); %close the serial port




% Callback subfunction defines two input arguments, click on the figure to
% execute the callback
function myCallback(src,eventdata)
global serial_exit ;
disp('callback executed, stopping with this page');
serial_exit = 1; %Time to exit

https://github.com/govind-mukundan/WebSiteDownloads/blob/master/Matlab/serialplot.m
serialplot_with_filter.m
function
serialplot(
)
%%%%%%%%%%%%%%%%%%%%%%%%
% This function plots data received from the serial port in real time,
kind
% of like an oscilloscope. Data is read from the input buffer every second
% and plotted. Plotting each sample individually is too slow for a high
% sampling rate (like 4ms or so). Once a complete page is displayed, the
% data is cleared and plot is reset.
% The Y axes is adjusted dynamically, disable it if you want.
% To stop the script cilck on the plot figure, the script will stop at the
% end of the current page. You can also initialize Total_Page_Limit to
some
% other value if you only want say 10 pages to be plotted.
% Timeout Warning: If data was not received via the serial port, matlab
% issues a timeout warning, you can exit on this too.
% Author: Govind Mukundan.
% Copyright: You are free to do whatever the heck you want to do with
% this file, except kill me.
% Revision: 1.0 $ $Date: 2012/08/21
%%%%%%%%%%%%%%%%%%%%%%%%


%run('clean');
clear all;
close all;
newobjs = instrfind ;
if(~isempty(newobjs))
fclose(newobjs); % closes all open serial ports incease they were not
closed properly before.
end


%%%%%%%%%%%%%%%%%%%%%%%%
% Plot/Data Settings %
%%%%%%%%%%%%%%%%%%%%%%%%
% sampling rate = 4ms (250 sps), display 5s per page
Fs = 250;
Seconds_Per_Page = 5;
X_Limit = Fs * Seconds_Per_Page;
Total_Page_Limit = 100;
% Range of values from 0 to 50
Y_Limit_High = 50;
Y_Limit_Low = 0;
x = 0;
figure('WindowButtonDownFcn',@myCallback,'Units','normalized','Position',[
0 0 1 1]); %set callback for stopping image
%figure('Units','normalized','Position',[0 0 1 1]); % Maximizes the figure
hLine = plot(nan,'-o'); %# Initialize a plot line (which isn't
displayed yet because the values are NaN)
axis auto;
xlim([0,X_Limit]); % static limits are better than auto see:
http://undocumentedmatlab.com/blog/plot-performance/
% ip data is of the format : +ABCD-+FFFF-+.... i.e. 6 characters per
% sample.
Ip_Data_Size = 6;


%%%%%%%%%%%%%%%%%%%%%%%%
% Serial Port Settings %
%%%%%%%%%%%%%%%%%%%%%%%%
s = serial('COM31'); %assigns the object s to serial port
set(s, 'InputBufferSize', Fs*Ip_Data_Size); %number of bytes in input
buffer
set(s, 'FlowControl', 'hardware');
set(s, 'BaudRate', 115200);
set(s, 'Parity', 'none');
set(s, 'DataBits', 8);
set(s, 'StopBit', 1);
set(s, 'Timeout',10);
disp(get(s,'Name'));
prop(1)=(get(s,'BaudRate'));
prop(2)=(get(s,'DataBits'));
prop(3)=(get(s, 'StopBit'));
prop(4)=(get(s, 'InputBufferSize'));
disp(['Port Setup Done!!',num2str(prop)]);
fopen(s); %opens the serial port


%%%%%%%%%%%%%%%%%%%%%%%%
% Filter Configuration %
%%%%%%%%%%%%%%%%%%%%%%%%
[b_lp,a_lp] = butter(8,40/(Fs/2),'low');
global dbuffer ;
dbuffer = zeros(length(b_lp),1); % buffer for LPF
global N;
N = 2;
global Dbuffer ; % buffer for moving avg filter
Dbuffer = zeros(N,1);
% Second order notch
%wo = 50/(250/2); bw = wo/25;
%[b_n,a_n] = iirnotch(wo,bw);
fo = 50; q = 25; bw = (fo/(Fs/2))/q;
[b_n,a_n] = iircomb(6,bw,'notch'); % Note type flag 'notch'
global nbuffer ;
nbuffer = zeros(length(b_n),1); % buffer for Notch
%%%%%%%%%%%%%%%%%%%%%%%%
% Init Variables %
%%%%%%%%%%%%%%%%%%%%%%%%
n=0;
num = zeros(1,Fs);
t = 0;




disp('Running');
while(n < Total_Page_Limit)
clf; % clear current figure (refresh the polt)
xlim([0,X_Limit]); ylim([Y_Limit_Low,Y_Limit_High]); % static
limits
grid on;
hold on;
disp('refresh');
while(t < X_Limit) %Runs for 200 cycles - if you cant see the symbol,
it is "less than" sign. so while (t less than 200)
% read 1s worth of samples = 250 * 6
index = 1;
num_index = 1;
% Handle timeout during read
lastwarn(''); % reset lastwarn
try
a=fread(s,Fs*Ip_Data_Size,'char'); %read 1s data
if(~isempty(lastwarn))
error(lastwarn)
end
catch err
disp('Timeout occurred, exiting');
fclose(s); %close the serial port
return; % Stop Script
end
%a=fread(s,Fs*Ip_Data_Size,'char'); %read 1s data
while(index < length(a) - 4) % get 1s of ADC samples from the text
data
if(a(index) == '+')
b=a(index+1:index+4,1); %reads the data from the serial
port and stores it to the matrix a
% a contains 4 ascii chars rep the hex no
windowbuttondownfcn
a_dec = hex2dec(b);
num(num_index) =
16*16*16*a_dec(1)+16*16*a_dec(2)+16*a_dec(3)+a_dec(4);
num(num_index) = EcgFilter(b_lp, a_lp, num(num_index));
%num(num_index) = MavgFilter(num(num_index));
%num(num_index) = EcgNotchFilter(b_n, a_n, num(num_index));
num_index = num_index + 1;
index = index +4;
end
index = index +1;
end
temp = max(num);
Y_Limit_Low = temp - 150;
Y_Limit_High = temp + 150;
ylim([Y_Limit_Low,Y_Limit_High]);

plot(t+1:t+num_index-1,num(1,1:num_index-1));
t=t+Fs;
drawnow; %# Force the graphics to update immediately, if you dont
do this plot will be executed only at teh end of the loop
end
global serial_exit ;
if(serial_exit == 1)
fclose(s); %close the serial port
return; % Stop Script
end
n = n+1;
t = 0;
end
fclose(s); %close the serial port




% Callback subfunction defines two input arguments, click on the figure to
% execute the callback
function myCallback(src,eventdata)
global serial_exit ;
disp('callback executed, stopping with this page');
serial_exit = 1; %Time to exit




function [data] = EcgFilter(b, a,value)


k = 1;
global dbuffer ;
while(k<length(b))
dbuffer(k) = dbuffer(k+1);
k=k+1;
end
dbuffer(length(b)) = 0;
k = 1;
while(k<(length(b)+1))
dbuffer(k) = dbuffer(k) + value * b(k);
k=k+1;
end


k = 1;
while(k<length(b))
dbuffer(k+1) = dbuffer(k+1) - dbuffer(1) * a(k+1);
k=k+1;
end


data = dbuffer(1);


function [data] = EcgNotchFilter(b, a,value)


k = 1;
global nbuffer ;
while(k<length(b))
nbuffer(k) = nbuffer(k+1);
k=k+1;
end
nbuffer(length(b)) = 0;
k = 1;
while(k<(length(b)+1))
nbuffer(k) = nbuffer(k) + value * b(k);
k=k+1;
end


k = 1;
while(k<length(b))
nbuffer(k+1) = nbuffer(k+1) - nbuffer(1) * a(k+1);
k=k+1;
end


data = nbuffer(1);


function [data] = MavgFilter(value)


k = 1;
global Dbuffer ;
global N;
% 1. shift by one element (discard the left most element)
while(k<N)
Dbuffer(k) = Dbuffer(k+1);
k=k+1;
end
Dbuffer(N) = 0;


k = 1;
while(k<N+1)
Dbuffer(k) = Dbuffer(k) + value;
k=k+1;
end


data = Dbuffer(1)/N;
https://github.com/govind-
mukundan/WebSiteDownloads/blob/master/Matlab/serialplot_with_filter.m