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Precellys Application Database_Lysis protocols_Human & animal cells & tissues_v0413e

Successfully tested grinding parameters for

human and animal cells and tissues


Human and animal cells and tissues
Precellys parameters
(number of cycles, time period, rpm, pause)

Starting material
(amount)

Target molecule
(yield)

Buffer conditions/remarks

Bat (Pteropus vampyrus): spleen


in RNAlater

RNA

RNeasy Kit

CK14

2 x 20 s @ 6800 rpm

Beaver: muscle
(40 mg)

DNA

400 l Tissue DNA lysis buffer

CKM

1 x 15 s @ 6500 rpm

Beetle
(20, 80, 200)

RNA

0,8; 1,5; 4,5 ml TRIzol, partly with


Cryolys, good homogenisation

7 ml + 2 x
SK38 filling

5/15 s @ 6500 rpm

Beetle

PCS-Kit

Good homogenisation

CKM

2 x 20 s @ 6000 rpm; 10 s
pause

Bovine: muscle
(20 mg)

DNA
(approx. 10 g)

200 l Lysis B. T + 20 l Prot K


peqGOLD Tissue DNA-Mini-Kit

CK14

1 x 5 s @ 5000 rpm

Bovine: brain

RNA

TriFast; good homogenisation

CK14

2 x 10 s @ 5500 rpm
5 s pause

Bovine: colon, stored in RNAlater RNA


"rubber-like" (approx. 100 mg)

1 ml peqGOLD TriFast

MK28

3 x 60 s @ 6800 rpm,
30 s pause

Bovine: kidney, lung

RNA

TriFast; good homogenisation

CK14

1 x 20 s @ 5000 rpm

Bovine: muscle

RNA

TriFast; good homogenisation

CK28L

2 x 10 s @ 5500 rpm
5 s pause

Bovine: rumen
(50 mg)

RNA

500 l RLT buffer

CK28

2 x 20 s @ 6200 rpm
30 s pause

Bovine: muscle
(100 mg)

Protein

1 mL TES buffer (10 mM Tris (pH 7.6),


1 mM EDTA, 0.25 M sucrose)

Ck28

2 x 20 s @ 6000 rpm

Bovine: brain
(50 mg)

Prion protein

500 l 5 % glucose sol.

CK14

2 x 30 s @ 6500 rpm

Bovine: probably muscle

Metabolites

350 L methanol (d 4 ) and 150 L


0.2 M sodium phosphate buffer (pH 7);
1 H-NMR spectra analysis to identify
the geographical origin of the animal

CK28

2 x 20 s @ 5000 rpm

Bovine: muscle
(200 mg)

Metabolites

200 oder 500 l methanol-containing


buffer

CK14S; CKM

Bug (Naucoris cimicoides)


(20 mg larvae)

DNA

300l lysis buffer (15% Sucrose, 0.05


M Tris pH 8.5 ,0.05 M EDTA) + lysozyme

200 l 0,1
ceramic
beads

Caenorhabditis elegans

RNA/DNA

Different lysis buffer

RNA with parts of


gen. DNA

500 l M9-buffer, Qiagen RNA extraction, successful RT-PCR

VK05

2 x 10 s @ 6500 rpm

RNA

TRIzol; RNA quality very good, Bioanalyzer RIN > 9.7; 28S/18S > 2

VK05

2 x 5 s @ 6500 rpm; 10 s

CK14

2 x 20 s @ 6500 rpm
30 s pause

Caenorhabditis elegans
(suspension of an entirely covered 9 cm Petri dish)

Caenorhabditis elegans
Caenorhabditis elegans
(15 mg, lyophilised)

Caenorhabditis elegans
(20 mg, lyophilised)

Caenorhabditis elegans, fresh


and frozen

Protein
(high yield & spots on
2D gel)
Protein
Protein

500 ml 6 M Urea, 2 M Thiourea, 4 %


CHAPS, 6.5 mM DTT, 1 % Prot K
Inhibitor Cocktail, 3 % Servalyte 3-10
750 l urea-containing lysis buffer;
sample must not be warmer than 40C;
in experiment 32C was obtained
Good results in Western blot, comparable to homogenisation using a vortex

VK05; CK14

CK14; SK38
CK14

1 x 20 s @ 6000 rpm, mit


Cryolys cooling (level 1)
3 x 30 s @ 6800 rpm
1 2 x 20 s @ 5400 rpm; 10
s pause

2 x 20 s @ 6500 rpm; 30 s
pause
2 x 20 s @ 6500 rpm

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Precellys Application Database_Lysis protocols_Human & animal cells & tissues_v0413e

Human and animal cells and tissues


Precellys parameters
(number of cycles, time period, rpm, pause)

Starting material
(amount)

Target molecule
(yield)

Buffer conditions/remarks

Cat: spleen, liver

Bacterial DNA

200 l PBS

CK14

1 x 30 s @ 6800 rpm

200 L of a wasser/acetonitrile (1:1)


mixture

CK14

2 x 30 s @ 6000 rpm

1 ml PBS

VK05

3 x 10 s @ 6500 rpm
15 s pause

Cell culture: Hepatocytes (human) RNA, pharmaceut.


cell pellets
substances

PCS-Kit

Cell culture

Protein, native
("plenty of")

Cell culture

Arsen

CK14

1 x 30 s @ 6000 rpm

Cell culture (CH4, Hela, NB231)

Protein

CK14

2 x 30 s @ 5000 rpm

Cell culture: PC12 cells

Protein

RIPA buffer with protease and phosphatase inhibitors, successful protein


analysis

CK14

2 x 30 s @ 5000 rpm

Cell culture: human SW480-line


(7 x 106 cells)

Metabolites; GC-MS

800 l Methanol/H2O (80:20)

CK14

2 x 15 s @ 5500 rpm

Centipede

DNA

CK14

1 x 15 s @ 5000 rpm

Chicken: thigh (Tibia), skeletal


muscle, hyaline cartilage
(100 mg)

RNA

1 ml TriFast; successful RT-PCR

MK28R

8 x 10 s @ 6500 rpm
20 s pause on ice each

Chicken: Bursa fabricii


(50 100 mg)

Protein

1 ml ice-cold 2D-DIGE lysis buffer/100


mg

CK14
CK14s

2 x 10 s @ 5000 rpm

Crayfish: Abdomen, muscle,


eyes, tendons (10 20 mg)

RNA, DNA of a
700 l CTAB-buffer (prewarmed to
pathogenic fungi
65C), successful RT-PCR and PCR
(Aphanomyces astaci)

MK28R

3 x (1 x 60 s @ 6500 rpm);
2 min pause

Dolphin: spleen

RNA

Qiagen extraction kit

CK14

2 x 15 @ 5500 rpm

Drosophila: entire (adults)

Nukleic acids

500 l buffer
(same result as with grinding)

CK14

3 x 30 s @ 6800 rpm
15 s pause

Drosophila: entire (10 adults)

Protein
(810 g)

in 100 l TBS/0.1 % Triton and Protease inhibitor

CK14S

1 x 25 s @ 5500 rpm

Drosphila: entire (4 adults)

Protein

in 150 l buffer; good homogenisation;


MINILYS

CK14S

1 x 25 s @ 5000 rpm

Drosophila: Larven (8)

Lipide

1mL 0.05% Tween-20

CK14/
CK14S

1 x 10 s @ 5000 rpm

Drosophila: larvae (15) or heads


of adults (80)

Lipids

1 ml buffer, GS/MS analysis

CK28

2 x 25 @ 5500 rpm

Fish (eal): kidney and gills


(100-150 mg)

Protein

50 mM Tris, 1 mM MgCl2 (pH 7.4)


buffer with Protease Inhibotor Cocktail,
ice-cold (1:10 w/v)

CK28R

3 x 20 s @ 6500 rpm

Fish (cod): intestinal segments

RNA

1 ml Qiazol lysis buffer

CK14

1 x 30 s @ 6000 rpm

Fish: pufferfish: muscle and liver


in RNAlater at -20C
(100 mg, in 7 x 7 mm pieces)

RNA

1 ml lysis reagent of RNeasy Mini Kit,


good results with MINILYS

CKM

2 x 30 s @ 5000 rpm
15 s pause

Fish (stickleback): liver


(50 150 mg fresh weight)

RNA/metabolites

8 ml/g (v/w) methanol and 2,5 ml


(v/w) water

CK14

2 x 10 s @ 6400 rpm
30 s pause

Fish (salmon): muscle


(300 mg)

DNA/Protein

1 ml extractionbuffer (100 mM Naacetate in 0,2 % Triton X-100, pH 5,5

CK28R

2 x 20 s @ 5500 rpm

Fish (salmon): colon


frozen

RNA

QIAzol lysis buffer

CK28R

2 x 30 s @ 6500 rpm

Fish (salmon): liver


frozen

RNA

QIAzol lysis buffer

CK28R

3 x 10 s @ 6000 rpm

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Precellys Application Database_Lysis protocols_Human & animal cells & tissues_v0413e

Human and animal cells and tissues


Starting material
(amount)

Target molecule
(yield)

Buffer conditions/remarks

Fish (salmon): all kinds of organs

RNA

1 ml TRIzol

Fish (salmon): muscle


(300 mg)

Enzyme activity

1 mL 100 mM Na-Acetate in 0.2%


Triton X-100, pH 5.5; successful measurement of activity

Fish: gonads

Protein

Fish: liver

Protein

Flies (Heleomyza borealis):


larvae, adult insect
20 mg fresh weight, frozen

PCS-Kit

Precellys parameters
(number of cycles, time period, rpm, pause)

MK28 empty
+ 2 beads of
MK28

2 x 25 s @ 5000 rpm

CKM

2 x 20 s @ 5000 rpm
10 s pause

CK14

3 x 10 s @ 6000 rpm

Phosphate buffer pH 7.6

CK14

2 x 10 s @ 6000 rpm

Metabolites

200 l ice-cold methanol:water mixture


(2:1)

CK14

3 x 30 s @ 6800 rpm

Flies: larvae
(50 mg)

Drugs

500 l H2O deion., successful isolation


of drugs, use in the forensic field

MK28R

1 x 30 s @ 4000 rpm

Frog: eggs (in RNALater)


(40 mg)

RNA

400 l RNA Lysis B. T-P


(peqGOLD Total RNA Kit) or 1 ml
peqGOLD TriFast

CK14

2 x 20 s @ 5500 rpm,
15 s pause

Frog: tails and eggs

RNA

RLT-buffer

CK14; CK28

1 x 20 s @ 6500 rpm

CK28

2 x 50 s @ 6200 rpm

CK14
CK28

2 x 10 s @ 5000 rpm

CK14
CK28

3 x 5 s @ 6500 rpm

CK14

1 x 30 s @ 6000 rpm

CK28

1 x 40 s @ 5000 rpm

CK01

3 x 30 s @ 6500 rpm
45 s pause

CK28L

1 x 20 s 6500 rpm

CK28

2 x 30 s @ 5900 rpm
15 s pause

CKM;
MK28R

1 x 15 s @ 5500 rpm

Frog: skin
Horse: liver

RNA

Horse: tonsils

RNA

Game animals: liver

Arsen

Game animals: muscle


(approx. 0,5 x 0,5 cm)

Metabolites

Human: biofilm of colon, tissue of DNA of microorgaa biopsy


nism
Human: bone neoplasm
(500 mg)

Lysis buffer

Frozen tissue in methanol/chloroform


sol.; satisfying homogenisation; use of
MINILYS
200 l buffer ATL (Qiagen) + 20 l
proteinase K or 200 l buffer mix (20
mM Tris/HCL pH 8.0, 2 mM EDTA, 1.2
% Triton X-100, lysozyme (20 mg/ml)

DNA?
(good yield)

Human: bones, pre-homogenised


in N2 in Freezer Mill
DNA
(200 mg)

400 ml extraction buffer; in comparison to conventional Prot K method very


good and usable results in the field for
ensic
100 l RNA Lysis buffer T-P; little RNA
yield, not measurable, DNA visible on
gel, no improvement with Cryolys

Human: cartilage of wrist joint


(50 mg)

DNA/RNA

Human: finger nails


(20 mg)

DNA

200 l lysis buffer; yield: 4 g/20 mg


= 2-fold compared to other protocols

MK28

6 x 20 s @ 6500 rpm;

Human: foetal or neonatal tissue


(skin) (0,5 cm2); chorionic villi

DNA

190 l EZ1 lysis buffer (Qiagen); good


yield in comparison to proteinase K
treatment

CK14

3 x 10 s @ 5500 rpm
15 s pause

Human: hair
(150 mg)

DNA/drugs

Dry; 1 H NMR-Spectroscopy

CK28L

2 x 20 s @ 6500 rpm

Human: liver
(20 mg)

DNA/RNA

600 l Prot K-buffer/1 ml TriFast,


MINILYS

CKM

1 x 15 s @ 5000 rpm

Human: lung

DNA

1 ml buffer; yields 10-20 % higher


than with TissueLyser

SK38

2 x 20 s @ 6500 rpm
2 x 30 s @ 6500 rpm

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Precellys Application Database_Lysis protocols_Human & animal cells & tissues_v0413e

Human and animal cells and tissues


Buffer conditions/remarks

Precellys parameters
(number of cycles, time period, rpm, pause)

Starting material
(amount)

Target molecule
(yield)

Human: lung
(20 mg)

DNA/RNA

600 l Prot K-buffer/1 ml TriFast,


MINILYS

CKM

2 x 15 s @ 5000 rpm

Human: nasal concha


(30 mg)

DNA/RNA

500 l PBS and 500 l 3M urea,


MINILYS, satisfying homogenate (small
pieces of connective tissue and matrix
remained)

CKM
MK28

3 x 60 @ 5000 rpm

Human: prostate tissue

Nucleic acids

Anti-Foam-reagent von Sigma-Aldrich

CK28

2 x 20 s @ 6000 rpm
15 s pause

Human: prostate tissue

DNA

CK28R

2 x 20 s @ 6000 rpm

Human: salivary stone


(approx. 5 mg)

DNA/RNA

200 l PBS, MINILYS, satisfying homogenate

CKM
MK28

3 x 60 s @ 5000 rpm

Human: black skin cancer


(20 mg)

DNA/RNA

600 l Prot K buffer/1 ml TriFast,


MINILYS

CKM

1 x 25 s @ 5000 rpm

Human: teeth, ground


(100 mg)

DNA

1,2 ml extraction buffer; EZ1 Biorobot,


Qiagen

CK28

2 x 30 s @ 5900 rpm

Human: teeth

DNA

MK28R

3 x 50 s @ 6500 rpm

Human: adipose tissue


(100 400 mg)

RNA

RLT-buffer + -Mercaptoethanol,
higher yield than with Ultra Thurrax

CKM

2 x 15 s @ 6000 rpm
20 s pause

Human: adipose tissue; thyroid


gland

RNA

High quality RNA on gels, Bioanalyzer and photometric measurements

CKM

2 -3 x 10 s @ 5000 rpm

Human: bladder tissue


(approx. 100 mg)

RNA

1 ml peqGOLD TriFast

CK28

2 x 25 s @ 6000 rpm
20 s pause

Human: brain
(450 mg)

RNA

4,5 ml TriFast, satisfying homogenate

CK28L

2 x 15 s @ 5500 rpm
15 s pause

Human: foetal brain


(approx. 60 mg)

RNA

1 ml peqGOLD TriFast; high yield

CK14

2 x 10 s @ 5500 rpm
5 s pause

Human: breast cancer tissue

RNA

CK14

1 x 20 s @ 5500 rpm

Human: cardiac valves, strongly


calcified
(approx. 100 mg)

RNA
(good yield)

600 l RLT buffer;


RNeasy-Mini-Kit, Qiagen

CK28

2 x 20 s @ 6500 rpm
15 s pause

Human: cartilage tumor


(50 100 mg)

RNA

TRIzol reagent (Invitrogen) + 200 l


Guanidine thiocyanate 4M; high
quality RNA

CK28R

3 x 15 s @ 6500 rpm
10 s pause

Human: colon
(30 mg, in RNAlater)

RNA

Good results, 2-fold yield of mRNA


with Cryolys than using only PCS

CKM

1 x 15 s @ 6000 rpm

Human: colon
(30 mg)

RNA
11 g

250 l TRIzol; satisfying results

CK28

2 x 10 s @ 6500 rpm
10 s pause

Human: glioma = brain tumor


(Neuroepithel); (10 15 mg)

RNA

1 ml QIAzol lysis buffer

CK14

2 x 40 s @ 5500 rpm

Human: hair follicle

mRNA

350 l RLT-buffer + -Mercapto-ETOH;


RNeasy Micro kit

MK28R

2 x 50 s @ 6500 rpm

Human: liver, adipose tissue


(55mg /300 mg)

mRNA/Protein

500 l lysis buffer with protease inhibitor

CK14

2 x 15 s @ 6500 rpm

Human: liver
(1/2 = 450 mg)

RNA

4,5 ml TriFast, satisfying homogenate

CK28L

2 x 15 s @ 5500 rpm
15 s pause

Human: lymph node metastases

RNA

600 l lysis buffer (RTL and Mercaptoethanol)

CK14

1 x 20 s @ 5500 rpm

Human: kidney
(2 x = 500 mg)

RNA

4,5 ml TriFast, satisfying homogenate

CK28L

2 x 15 s @ 5500 rpm
15 s pause

PCS-Kit

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Precellys Application Database_Lysis protocols_Human & animal cells & tissues_v0413e

Human and animal cells and tissues


Buffer conditions/remarks

Precellys parameters
(number of cycles, time period, rpm, pause)

Starting material
(amount)

Target molecule
(yield)

Human: muscle
(50 mg)

RNA, Protein, chem.


substances

CK14

1 x 20 s @ 5000 rpm

Human: nose tissue with mucosa

RNA

CK14

1 x 10 s @ 5500 rpm

Human: oral mucosa tumorsstored in RNAlater

RNA
(high yield)

600 l RLT buffer


(RNeasy-Mini-Kit, Qiagen)

CK28

1 x 25 s @ 6500 rpm

Human: palatine tonsil


(100 mg)

RNA

1 ml peqGOLD TriFast

CK28

1 x 30 s @ 6500 rpm

Human: pancreas
(3 x = 135 mg)

RNA

1,5 ml TriFast, satisfying homogenate

CKM

2 x 15 s @ 5500 rpm
15 s pause

Human: skeletal muscle

RNA
(high yield)

1 ml peqGOLD TriFast;

CK14

2 x 10 s @ 5500 rpm
5 s pause

Human: skin
(approx. 5 x 10 mm, cut in small
stripes, frozen in N2)

RNA

500 l Trireagent Sigma

CK28

3 x 20 s @ 6200 rpm
15 s pause

Human: skin biopsy

RNA

Lipid TissuE Kit, Agilent Nanochip

CK14

4 x 23 @ 6300 rpm

Human: skin biopsy

RNA

RA1 Lysis buffer (Macherey-Nagel) +


1% -Mercapto-Ethanol

CK14

6 x 23 @ 6300 rpm

Human: skin node, strongly


collagenous

RNA

1 ml peqGOLD TriFast

CK28

3 x 60 s @ 6500 rpm
30 s pause

PCS-Kit

Human: testis
(20 mg)

RNA

500 l RLT buffer

CKM

1 x 5 s @ 6000 rpm

Human: tumor tissue (Meningioma) (10 15 mg)

RNA

1 ml QIAzol lysis buffer

CK14

2 x 40 s @ 5500 rpm

Human: bladder tumor


(500 mg)

Protein

2 ml lysis buffer

CK28L

2 x 20 s @ 6500

Human: breast cancer (Mammacarcinoma)

Protein

CK14

2 x 50 s 5000 rpm

Human: cancer of the colon


(30 300 mg)

Protein

300 l lysis buffer

CK14

2 x 30 s @ 6400 rpm

Human: colon/small intestine,


stomach

Protein

0,32 M sucrose buffer (min 400 l; 5


% tissue)

CK14

4 x [1 x 50 s @ 5000 rpm]
each 3 min pause on ice

Human: cornea

Protein

550 l PBS buffer, -Mercapto-EtOH,


SDS

CK14

4 x 23 s @ 6300 rpm

Human: liver, pericardium membrane, colon, (fine-cuts, freezedried)

Protein

Dry, cooled

CK28;
CK14S

1 x 20 s @ 6000 rpm

Human: lung
(3 x 1 cm)

Protein ?

5 ml RIPA buffer, satisfying homogenisation , with SKL better results

SKL;
CKL

2 x [ 2 x 30 s @ 6500]

Human: meninges

Native protein

PBS buffer

CK28L

2 x [1 x 30 s @ 6500 rpm]
pause on ice

Human: ovary cancer tissue


(1 mg)

Protein

30 l buffer

CK14

2 x 30 s @ 6500 rpm
30 s pause

Human: pancreas

Protein

CK14

2 x 50 s @ 5000 rpm

Human: skin cancer tissue


(100 mg)

Protein

500 l DNA-free water

CK28

3 x 30 s @ 6800 rpm
30 s pause

Human/bovine: sperm
(4 x 107 /sample)

Protein (nucleus)

in 250 l Heparin/DDT/Triton buffer

VK01

2 x 15 s @ 5000 rpm, 3 min


pause on ice

Human: tumor tissue (Meningioma) (100 mg)

Protein

1 ml homogenisation buffer [100mM


HEPES, pH7,4, 100 mM NaCl 0,5%

CK28

3 x 60 s @ 6500 rpm

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Precellys Application Database_Lysis protocols_Human & animal cells & tissues_v0413e

Human and animal cells and tissues


Starting material
(amount)

Target molecule
(yield)

Buffer conditions/remarks
CHAPS (3-[(3-cholamidopropyl) dimethylammonio]-1-propanesulfonic
acid)] per 100 mg tissue
200 l 5 x TBS + 100 l TritonX100 +
protease inhibitors; almost completely
homogenised

PCS-Kit

Precellys parameters
(number of cycles, time period, rpm, pause)

CKM

3 x 20 s @ 6800 rpm; 3 x
repeated

Human: umbilical

Protein

Human: liver
(pea-like piece)

Adenovirus

500 l H20; after centrifugation pos.


detection of the virus in the supernatant

CKM

2 x 20 s @ 5500 rpm

Human: placenta and kidney

Metabolites?

With interim cooling on dry ice satisfying results with MINILYS, better than
vortexing;

CK14

1 x 60 s @ 5000 rpm

Human: hair strains, 1- 2 cm


(20 mg)

MS, forensic analytic

Dry homogenisation, successful HPLCMS/MS

MK28

2 x 50 s @ 6500 rpm
15 s pause

Human: brain
(50 mg)

Fatty acids

350 l methanol (0C)

CK28

2 x 30 s @ 6000 rpm

Human: skin (with blisters)

NO, Nitrat, Nitrit

NEM (NEthylmaleimide)/EDTA/Trypsin

CK14

2 x [3 x 20 s @ 5500 rpm
30 s pause] with 3 min on ice

Cryolys level 1

CKM

2 x 20 s @ 5500 rpm

Human: colon and placenta


Krill (Euphausiacea)
(100 mg frozen abdominal
tissue)

Enzymes activity

In 1 ml ice-cold H2O; with Cryolys


combined; successful enzyme assays

CKM

2 x 15 s @ 5000 rpm
10 s pause

Leech: nerve cords

RNA

QIAzol lysis buffer

CK14

2 x 45 s @ 6500 rpm

Locusts
(20 mg)

DNA
(500 g) ??

Addition after homogensisation:


1 ml CTAB (acc. to Dumolin et al.,
1995)

CK14

1 x 15 s @ 5000 rpm

Lumbricus rubellus

Metabolites

1,1 g of 1 mm circonia beads in 2 ml


tube

CK01

2 x 10 s @ 6500 rpm
15 s Pause

Mammal: placenta

DNA

CK28

1 x 30 s @ 6000 rpm

Mammal: spleen

DNA

CK28

1 x 30 s @ 6000 rpm

Mammal: breast cancer tumor


and lymph node metastases
(frozen)

RNA

600 l RLT lysis buffer + mercaptoethanol

CK14

1 x 20 s @ 5500 rpm

Mammal: rumen

RNA

0.5 mL CTAB buffer and 0.5 mL


phenolchloroform3-methyl-1-butanol
(25:24:1) mixture

CK28

2 x 30 s @ 6200 rpm

Mammal: heart, spleen, pancreas

Virus RNA

Mammal: skin

RNA/protein

200 300 l buffer (partly with fluid


loss)

CK28;
CK28L

3 x 20 s @ 6200 rpm; 5 s
pause

Mammal: artery

Pharmaceut. substances

CK28

2 x 50 s @ 6000 rpm

Mammal: spinal cord

Protein, chem. substances

CK14

2 x 20 s @ 5500 rpm

CK14

brain: 2 x 30 s @ 6500 rpm,


lymph tiss.: 3 x 30 s @ 6500
rpm
15 s pause

CK14
CK28

skin: 2 - 4 x 30 s @ 6000 rpm


spleen: 1 x 30 s @ 6000 rpm

CK28L

1 x 40 s @ 5000 rpm

Mammal: brain, lymph tissue


(50 150 mg)

Prion protein

Mammal: skin (122 mg), spleen


(38 mg)

Bacteria (Streptococcus pyogenes)

Marten: faeces
(dry piece, approx. 2 x 2 cm

Metabolites

After homogenisation: 500 1500 l


5 % glucose sol.; successful analysis of
the Prion protein with ELISA and Western Blot
1 ml sterile NaCl buffer, viability of the
bacteria after homogenisation verified
by growth on agar plates
Homogenisation to powder without any
buffer, worked well in MINILYS

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Precellys Application Database_Lysis protocols_Human & animal cells & tissues_v0413e

Human and animal cells and tissues


Precellys parameters
(number of cycles, time period, rpm, pause)

Starting material
(amount)

Target molecule
(yield)

Buffer conditions/remarks

Non-biting midge (Chironomus


riparius) larvae, adults

DNA

400 l 5 % Chelex (Sigma)

Mite (Psoroptes) of sheep: mixture of larvae, adults, nymphs

RNA

Monkey (Makaka): brain


(500 mg)

RNA

Monkey (Makaka): spleen, liver,


muscle, joints (30/100 mg)

Viral RNA

Monkey (chimpanzee): hair


(20 mg , pieces of 2 cm)

Steroids

Moth (Looper, Geometridae):


head and legs

DNA

Mouse: Aorta

DNA

Mouse: brain
(20 mg)

DNA
(15 g)

200 ml Lysis B. T + 20 l Prot K


(peqGOLD Tissue DNA Mini Kit)

Mouse: bones, thigh (femur)

DNA

dry, good quality

Mouse: ear
(20 mg)

DNA
(32 g)

200 ml Lysis B. T + 20 l Prot K


(peqGOLD Tissue DNA Mini Kit)

CK14

2 x 20 s @ 5000 rpm
10 s pause

Mouse: fur with skin


(approx. 50 mg)

DNA & RNA

750 l peqGOLD TriFast or


350 l RLT-buffer(RNeasy, Qiagen)

CK14

3 x 15 s @ 6500 rpm
30 s pause

Mouse: heart
(20 mg)

DNA
(22 g)

200 ml Lysis B. T + 20 l Prot K


(peqGOLD Tissue DNA Mini Kit)

CK14

1 x 15 s @ 5000 rpm

Mouse: liver
(20 mg)

DNA
(90 g)

200 ml Lysis B. T + 20 l Prot K


(peqGOLD Tissue DNA Mini Kit)

CK14

1 x 15 s @ 5000 rpm

Mouse: lung
(20 mg)

DNA
(35 g)

200 ml Lysis B. T + 20 l Prot K


(peqGOLD Tissue DNA Mini Kit)

CK14

1 x 15 s @ 5000 rpm

Mouse: lung, frozen


(15 mg)

DNA

500 l XTO buffer (Qiagen)

MK28R

1 x 15 s @ 6000 rpm + (1 x
15 s @ 5000 rpm)

Mouse: lung

DNA

4 ml buffer

CK28L

2 x 20 s @ 5000 rpm/ 2 x 20
s @ 6500 rpm; 10 s pause

Mouse: kidney
(20 mg)

DNA
(37 g)

200 ml Lysis B. T + 20 l Prot K


(peqGOLD Tissue DNA Mini Kit)

CK14

1 x 15 s @ 5000 rpm

Mouse: muscle
(20 mg)

DNA
(9 g)

200 ml Lysis B. T + 20 l Prot K


(peqGOLD Tissue DNA Mini Kit)

CK14

1 x 15 s @ 5000 rpm

Mouse: spinal cord


(10 mg)

DNA, RNA

200 l PBS; MINILYS, satisfying homogenate

CK14s

1 x 10 s @ 5000 rpm

Mouse: spleen
(20 mg)

DNA
(150 g

200 ml Lysis B. T + 20 l Prot K


(peqGOLD Tissue DNA Mini Kit)

CK14

1 x 15 s @ 5000 rpm

Mouse: Aorta, testes, muscles

RNA

100 200 l lysis buffer, MINILYS,


satisfying homogenate

CK14S

1 x 20 s @ 5000 rpm

Mouse: arterial tissue


(30 mg)

RNA
(13 ng)

250 l TRIzol, nearly 2-fold higher


yield compared with competitor

CK14

2 x 10 s @ 6500 rpm + 1 x
15 s @ 6500 rpm, je 10 s
pause

Mouse: bones, Tibia


(100 mg)

RNA

1 ml peqGOLD TriFast

MK28

8 x 10 s @ 6500 rpm, 20 s
pause on ice each cycle

Mouse: bones, tibia

RNA

Dry, frozen in N2, complete homogenisation, RNA quality comparable to


competitor devices

CK28

1 x 30 s @ 6000 rpm

PCS-Kit
VK05

2 x 30 s @ 6500 rpm

CK28

4 x 30 s @ 6200 rpm

5 ml TriFast and Tissue RNA lysis


buffer

CK28L

2 x 20 s @ 5500 rpm
15 s pause

1 ml lysis buffer for viral RNA


extraction (Macherey&Nagel); successful RT-PCR

CK28
MK28

2 x 10 s/20 s @ 5000 rpm

CK28R

2 x 30 s / 3 x 50 @ 6500
rpm

CK14

2 x 20 s @ 5000 rpm

CK28

2 x 30 s @ 5000 rpm

CK14

1 x 15 s @ 5000 rpm

100 l TE pH 8.0; peqGOLD Tissue


DNA Mini Kit

MK28 (R);
CK28

1 x 30 s @ 6000 rpm/1 x 20
s @ 6500 rpm

info@peqlab.com - www.peqlab.com

Precellys Application Database_Lysis protocols_Human & animal cells & tissues_v0413e

Human and animal cells and tissues


PCS-Kit

Precellys parameters
(number of cycles, time period, rpm, pause)

MK28R

3 x 30 s @ 6500 rpm

1 ml peqGOLD TriFast

CK14

1 x 20 s @ 5000 rpm

RNA

300 l TriFast; macroscopically good


results

CK14S

1 x 10 s /20 s @ 5000 rpm

Mouse: cartilage

RNA

1 ml QIAzol

CK28

4 (6) x 15 s @ 6800 rpm

Mouse: cartilage (hyaline)


(100 mg)

RNA

1 ml peqGOLD TriFast

Mouse: colon

RNA

500 l GTC-buffer

CK28

2 x 15 s @ 6800 rpm
30 s pause

Mouse: colon
(20 mg)

RNA
(6,4 g)

Precellys Tissue RNA Kit

CKM

1 x 20 s @ 5000 rpm
2 x 20 s @ 5500 rpm, 30 s
pause

Mouse: colon, frozen in N2


(1 piece : 8 to 10 mm length)

RNA

500 l peqGOLD TriFast

CK14

1 x 15 s @ 6600 rpm

Mouse: cornea

RNA

150 l RLT buffer + -Mercaptoethanol

CK14

3 x 20 s @ 6300 rpm

Mouse: ear
(50 mg)

RNA
(18 g)

1 ml peqGOLD TriFast

CK14

2 x 20 s @ 5000 rpm
5 s pause

Mouse: inner ear bones, frozen


(1 piece)

RNA

500 l peqGOLD TriFast

CK28

2 x 20 s @ 5500 rpm
30 s pause

1 ml peqGOLD TriFast

CK28

3 x 30 s @ 6800 rpm
15 s pause

Mouse: embryo, fixed in formalin RNA

Phenol-Chloroform extraction

CK14
CK28

2 x 20 s @ 6500 rpm

Mouse: heart
(50 mg)

RNA
(19 g)

1 ml peqGOLD TriFast

CK14

1 x 20 s @ 5000 rpm

Mouse: kidney
(20 mg)

RNA
(approx. 25 g)

100 l RNA Lysis buffer T-P


Precellys Tissue RNA Kit

CKM

1 x 20 s @ 5000 rpm

Mouse: kidney
(50 mg)

RNA
(23 g)

1 ml peqGOLD TriFast

CK14

1 x 20 s @ 5000 rpm

Mouse: liver
(whole liver)

RNA

TRIzol, RNeasy

CK28L

1 x 15 20 s @ 5000 rpm

Mouse: liver
(30 mg)

RNA

350 l RA1 lysis buffer


(NucleoSpin RNA II Kit, M&N); (2-fold
yield compared to FastPrep 24)

CK14

2 x 20 s @ 6500 rpm
30 s pause

Mouse: liver
(50 mg)

RNA
(17 g)

1 ml peqGOLD TriFast

CK14

1 x 20 s @ 5000 rpm

Mouse: lung
(50 mg)

RNA
(12 g)

1 ml peqGOLD TriFast

CK14

1 x 20 s @ 5000 rpm

Mouse: lung, spleen, kidney

RNA

500 600 l lysis buffer, satisfying


homogenate, MINILYS

CK14

1 x 20 s @ 5000 rpm

Mouse: midriff (Diaphragma)

RNA

600 l buffer; approx. 3-fold higher


yield than with Retsch grinding mill

SK38

2 x 15 s @ 6500 rpm; 30 s
pause

Mouse: muscle
(50 mg)

RNA
(44 g)

1 ml peqGOLD TriFast

CK14

1 x 20 s @ 5000 rpm

Mouse: pancreas

RNA

Saline buffer; Titration log CCID50/ml


Pancreas homogenate

CK14
CK28

3 x 5 s @ 5000 rpm

Mouse: pancreas
(30 75 mg)

Virus-RNA

Lysis buffer RLT (volume was adapted


to the amount of tissue to obtain a 5%

CK28

3 x 5 s @ 6500 rpm

Starting material
(amount)

Target molecule
(yield)

Mouse: bones
(50 mg)

RNA/Protein

Mouse: brain
(50 mg)

RNA
(12 g)

Mouse: brain
(5 mg)

Mouse: embryos, near to birth


1/2 embryo

RNA

Buffer conditions/remarks

MK28R

8 x 10 s @ 6500 rpm, 20 s
pause on ice each cycle

info@peqlab.com - www.peqlab.com

Precellys Application Database_Lysis protocols_Human & animal cells & tissues_v0413e

Human and animal cells and tissues


Starting material
(amount)

Target molecule
(yield)

Buffer conditions/remarks

PCS-Kit

Precellys parameters
(number of cycles, time period, rpm, pause)

w/v homogenate, successful quantitation of Virus-RNA


600 l RLT buffer, (RNeasy-Mini-Kit,
Qiagen); (good yield and cDNAsynthesis)

CK14
CK28

2 x 30 s @ 6500 rpm
20 s pause

RNA
(7 11 g/20 mg)

100 l RNA Lysis buffer T-P;

CKM

1 x 10 s @ 5000 rpm bis 2 x


15 s @ 5500 rpm

Mouse: skin, frozen in little


pieces

RNA or Protein?

With Cryolys cooling level 1

CKM

2 x 20 s @ 5500 rpm
5 s pause

Mouse: spleen, infected with


Listeria monocytogenes (20 mg)

RNA

RA1 buffer

CK14

1 x 30 s @ 6000 rpm

Mouse: uterus

RNA

RNeasy Mini Kit

CK28

2 x 20 s @ 6000 rpm
20 s pause

Mouse: testes

tRNA

1 ml TRIzol reagent, RT-PCR

CK14

2 x 20 s @ 6000 rpm

Mouse: tail
(50 mg)

RNA
(9 g)

1 ml peqGOLD TriFast

CK14

3 x 20 s @ 6500 rpm
15 s pause

Mouse: embryonic tooth germs,


15-16 days post coitum
(0,75 mg)

RNA

200 l RLT lysis buffer + -MercaptoEtOH

CK14s

2 x 10 s @ 5500 rpm
10 s pause

Mouse: prostate gland


(15 mg)

Enzymes/RNA

1 ml TRIzol

CK14

1 x 20 s @ 5000 rpm

Mouse: lung, testes, brain

Enzymes/RNA

1 ml Proteinbuffer/TRIzol

CK14

1 2 x 20 s @ 6000 rpm

Mouse: Aorta

Protein

CK28

2 x 30 s @ 5000 rpm

Mouse: Aorta

Protein

200 l 5 x TBS + 100 l TritonX100 +


protease inhibitors; complete homogenisation

CKM

3 x 15 s @ 6500 rpm

Mouse: brain
(20 mg)

Protein

200 l buffer

CK14

1 x 20 s @ 5000 rpm

Mouse: brain, Hippocampus

Protein

CK14

2 x 30 s @ 5000 rpm

Mouse: brain ; Hemibrains,


frozen

Protein

CK14

2 x 30 s @ 6500 rpm

Mouse: brown adipose tissue


(30 50 mg)

Protein

CK28

2 x 50 s @ 5000 rpm
5 s pause

Mouse: cartilage

Protein

With and without lysis buffer

CK28 (R)

3 x 15 s @ 6800 rpm

Protein

1 ml 150 mM PBS with anti-protease


cocktail

CK14

1 x 60 s @ 6500 rpm

Mouse: eye

Protein

1 ml Ripa buffer

CKM

2 x 15 s @ 5000 rpm; 30 s
pause

Mouse: heart

Protein

1 ml RIPA-buffer

CKM

1 x 15 s @ 5000 rpm
2 x 15 s @ 5000 rpm; 30 s
pause

Mouse: heart

Protein

4-fold yield with MINILYS versus sonification; no degradation

CK14

1 x 20 s @ 5000 rpm

Mouse: heart
(40 60 mg)

Protein
(55 g/50 mg)

In Tris/HCL; SDS addition after homogenisation

CKM

10 s /15 s @ 5000 rpm

Mouse: skin
(30 mg)

RNA

Mouse: skin of sole of foot


(15 25 mg)

Mouse: ear, infected with Bacillus

anthracis

RIPA buffer with protease and phoshpatase inhibitors, successful protein


analysis
500 l of 10 mM Tris, pH 7.5, 100
mM NaCl, 5 mM EDTA, 0.5% Triton,
10% Glycerol
500 l 25 mM Tris/HCl, 1 mM EDTA;
1 % Triton X-100; 0,5 % Nadeoxycholate, successful Western blot

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Precellys Application Database_Lysis protocols_Human & animal cells & tissues_v0413e

Human and animal cells and tissues


Precellys parameters
(number of cycles, time period, rpm, pause)

Starting material
(amount)

Target molecule
(yield)

Buffer conditions/remarks

Mouse: kidney

Protein

1 ml RIPA buffer

Mouse: kidney

Protein; mitochondria
shouldnt be destroyed

300 l buffer; complete homogenisation in CK28 ; in CK14 small pieces of


tissue remained

Mouse: liver
(100 mg)

Protein

Mouse: lung
(40 mg)

Protein

Mouse: lung

Protein

Mouse: pancreas

Native Protein

800 l PBS, incl. Cryolys cooling

CKM

Cryolys: 1 x 15 s @ 6000 rpm

Mouse: spleen, lung, colon

Protein

250 l RIPA buffer with 10 % protease


inhibitor (Sigma); very good results
with MINILYS

VK05

3 x 60 s @ 5000 rpm

Mouse: spleen
(20 mg)

Protein

RIPA-buffer with protease inhibitor


1:100 (Sigma 8340)

VK05

1 x 60 s @ 6000 rpm

Mouse: skin

Protein

700 l PBS

CK28

2 x 20 s @ 6200 rpm
20 s pause

Mouse: skin
(1-2 x 0,4 cm)

Protein

500 l PBS; equal results in FACS with


or without cooling

CKM (?)

2 x 30 s @ 6500 rpm; 20 s
pause

Mouse: sperm

Membrane protein,
partly native

Small volumes (200 l); better results


with buffer without Triton

CK14S
VK01S

2 x 20 s @ 5000 rpm
3 min pause on ice

Mouse: testes

Protein

CKM

1 x 30 s @ 5000 rpm

Mouse: tumors, subcutane autogenic


(approx. 100 mg)

Phoshorylated protein

CK28

1 x 30 s @ 6500 rpm

Mouse: tumor, (xenograft)

Natives Protein

CK28R

1 x 20 s @ 5000 rpm; 2 x 60
s @ 6000 rpm

1 ml PBS with defined germ number;


(nearly 100% recovery)

CK14

3 x 10 s @ 6800 rpm
15 s pause

Mouse and chicken: viscera


(200 mg)

Intact germs

Burkholderia thailandensis

PCS-Kit
CKM

1 x 15 s @ 5000 rpm

CK14; CK28

3 x 20 s @ 3000 rpm;
1 x 20 s @ 4000 rpm;
1 x 20 s @ 5000 rpm

1 ml PBS

CK14

1 x 25 s @ 5500 rpm

600 l RIPA-buffer

CKM

1 x 10 s @ 5000 rpm

CK28
MK28R

2 x 50 s @ 5000 rpm

1 ml detergent-containing buffer
with phosphatase inhibitor; very good
results: no dephosphorylation
With Cryolys temperature remained
ander 5C, better results in contrary to
grinding

Mouse: frontaler Cortex

Fatty acids

350 l methanol bei 0C

CK28

2 x 30 s @ 6000 rpm

Mouse: liver, dried

Fatty acids

500 l 2 % KCL

CK14

1 x 15 s @ 5000 rpm

Mouse: colon, liver, brain, lung


testes, partly complete

Stable chemical
elements, like Arsen

Almost complete homogenisation

CK28 L

2 x 20 s @ 6500 rpm

Mouse: adipose tissue


(200 mg)

Metabolites

200 oder 500 l methanol-containing


buffer, with Cryolys cooling (level 1)

CK14S; CKM

2 x 20 s @ 5500 rpm
5 s pause

Mouse: brain
(200 mg)

Metabolites

200 oder 500 l methanol-containing


buffer, with Cryolys cooling (level 1)

CK14S; CKM 1 x 26 s @ 6500 rpm

Mouse: liver
(200 mg)

Metabolites

200 oder 500 l methanol-containing


buffer, with Cryolys cooling (level 1)

CK14S; CKM

Mouse: liver, kidney, muscle,


adipose tissue, brain (50 150
mg)

Metabolites

Methanol, 10 mM phosphat buffer, 6


l/mg liver + kidney; 3 l/mg other
tissue. Good, reproducible results in
High-Throughput tests

CK14

Mouse: kidney
(200 mg)

Metabolites

200 oder 500 l methanol-containing


buffer, with Cryolys cooling (level 1)

CK14S;
CKM

10

2 x 20 s @ 5500 rpm, 5 s
pause
3 x 20 s @ 5500 rpm
30 s pause
2 x 20 s @ 5000 rpm, 5 s
pause

info@peqlab.com - www.peqlab.com

Precellys Application Database_Lysis protocols_Human & animal cells & tissues_v0413e

Human and animal cells and tissues


Starting material
(amount)

Target molecule
(yield)

Buffer conditions/remarks

Mouse: muscle
(200 mg)

Metabolites

200 oder 500 l methanol-containing


buffer, with Cryolys cooling (level 1)

Mouse: heart (1/2)

Drugs

Concentration of specific drugs successfully measured

Mouse: lung

PCS-Kit

Precellys parameters
(number of cycles, time period, rpm, pause)

CK14S; CKM 1 x 20 s @ 6000 rpm


CK14

2 x 15 s @ 6500 rpm

Drugs

CK28

2 x 30 s @ 6000 rpm

Mouse: ovaries
(100 mg)

Drugs/HIV

CK28

2 x 25 s @ 5500 rpm

Mouse : feaces, frozen

Cortisol

10 vol 90 % ethanol, Cayman Corticosterone EIA Kit

CK14

3 x 20 s @ 5200 rpm bis 3 x


30 s @ 6500 rpm

Mouse: liver (100 mg), muscle


(165 mg)

Living cells

600 l PBS

3 beads
CK28

1 x 15 s @ 5000 rpm

Mouse: lymph nodes


(2 nodes = 8 mg)

Living cells

600 l PBS

3 beads
CK28

1 x 15 s @ 5000 rpm

Mouse: spleen

Living cells

CK28

2 x 20 s @ 5900 rpm

CK28R

3 x 30 s @ 6800 rpm; repeat


45x

Mouse: foetus, dried

Dry, good homogenisation

Mouse: testes
(120 mg)

1 ml buffer; good homogenisation

CKM

1 x 20 s @ 6500 rpm

Mouse: skeletal muscle & heart


(each 220 mg)

CK14

1 x 20 s @ 6000 rpm

Mouse: salivary glands

CK28

2 x 50 s @ 5000 rpm

Metabolites

4 ml /g (v/w) methanol + 0,85 ml


H2O, successful 1H NMR-spectroscopy

CK14

2 x 10 s @ 6400 rpm
30 s pause

DNA and RNA

1 ml TRIzol reagent

VK05

2 x 30 s @ 6800 rpm

Nematodes (Litomosoides sigmodontis) (3 - 5 female)

DNA and RNA

800 l TRIzol reagent

VK05

4 x 10 s @ 5000 rpm

Nematodes

Bacterial DNA

TRIzol reagent

MK28R

4 x 30 s @ 6800 rpm

Nematodes
(300 l suspension)

intact bacteria

300 l suspension

CK14; VK05

2 x 30 s @ 5000 rpm
10 s pause

Pig: ear

DNA
(approx. 7 g)

100 l TE-buffer + 25 l Prot K


Precellys Tissue DNA Kit

CKM

2 x 20 s @ 5000 rpm,
20 s pause

Pig: ear
(20 mg)

DNA
(approx. 20 g)

400 l Lysis B. T + 40 l Prot K


peqGOLD Tissue DNA-Mini-Kit

CK28

3 x 20 s @ 6500 rpm,
10 s pause

Pig: liver
(30 mg)

DNA
(90 g)

100 l TE-buffer + 25 l Prot K


Precellys Tissue DNA Kit

CKM

1 x 10 s @ 5000 rpm

Pig: liver
(20 mg)

DNA
(> 40 g)

200 l Lysis B. T + 20 l Prot K


peqGOLD Tissue DNA-Mini-Kit

CK14

1 x 5 s @ 5000 rpm

Pig: ear

RNA
(approx. 28 g)

100 l RNA Lysis buffer T-P


Precellys Tissue RNA Kit

CKM

2 x 20 s @ 5000 rpm
20 s pause

Pig: heart
(approx. 100 mg)

RNA
(high yield)

600 l RLT-buffer
RNeasy-Mini-Kit, Qiagen

CK28

2 x 20 s @ 6500 rpm
15 s pause

Pig: liver
(20 mg)

RNA
(approx. 32 g)

100 l RNA Lysis buffer T-P


Precellys Tissue RNA Kit

CKM

1 x 10 s @ 5000 rpm

Pig: bladder
(150 mg, frozen)

Protein

700 l PBS

CK28

2 x 25 s @ 6000 rpm
20 s pause

Mussels: gills
(100 mg)
Nematodes (Acanthocheilonema

viteae)
(2 female)

11

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Precellys Application Database_Lysis protocols_Human & animal cells & tissues_v0413e

Human and animal cells and tissues


Precellys parameters
(number of cycles, time period, rpm, pause)
1 x 15 s @ 5000 rpm;
2 x 20 s @ 5500 rpm;
1 x 20 s @ 6500 rpm

Starting material
(amount)

Target molecule
(yield)

Buffer conditions/remarks

Pig: liver
(170 mg & 240 mg)

Protein

Sodium-calcium-phosphate-buffer

CK14

Pig: muscle
(100 mg)

Protein

0,5 ml TES buffer (10mM Tris ph 7,6;


1 mM EDTA and 0,25M sucrose)

CKM

2 x 20 s @ 6000 rpm

Pig: brain, kidney, liver, muscle


(1 g)

Drugs

4 volumes buffer pH 9

CK28L

2 x 30 s @ 6500 rpm

Pig: Iris ciliary body


(700 mg)

Drugs

2 volumes NaCl buffer; use of MINILYS

Pig: colon, frozen


(approx. 100 mg)

400 l PBS

PCS-Kit

CK28L + 2 4 x 30 s @ 5000 rpm


Kugeln CK50 15 s pause
CK14

1 x 30 s @ 6500 rpm

MK28R

2 x 20 s @ 6500 rpm

Pig (tea cup pig): skin

RNA
protein

Rabbit: gonads
(20 50 mg)

Lipids and Protein

Incl. Cryolys; higher yield compared to


grinding with mortar, little degradation
of lipids

CK28
MK28

2 x 15 s @ 6000 rpm

Rabbit: Retina

Drugs

1 ml buffer

CK28R

2 x [2 x 60 s @ 6800 rpm

Rat: bones

RNA

TriFast

Rat: liver
(30 mg)

RNA
(30-50 g)

600 l RLT buffer


(RNeasy-Mini-Kit, Qiagen)

Rat: shinbone (Tibia)


(70 and 150 mg)

RNA

500 l RLT buffer after 1. homogenisation; 126 g/l and 520 g/l,
respect.; good RealTime PCR

Rat: Soleus-muscle and Achilles


tendon

RNA

TRIreagent

CK28

5 x 20 s @ 6000 rpm

Rat: spleen
(approx.150 mg, ganz)

RNA

1 ml QIAzol Lysis reagent

CK14

3 x 20 s @ 6000 rpm

Rat: bladder
(200 mg)

Protein

1 ml protein buffer; use of MINILYS

CKM

2 - 3 x 30 s @ 5000 rpm
10 s pause

Rat: brain
(1/4 bzw 1/2 brain)

Protein

4 ml protein buffer; use of MINILYS

CK28L

1 2 x 15 s @ 5000 rpm
10 s pause

Rat: colon
(200 mg)

Protein

1 ml protein buffer; use of MINILYS

CKM

1 x 20 s @ 5000 rpm

Rat: lung
(100 mg/200 mg)

Protein

1 ml protein buffer, good results; use of


MINILYS

CKM

1 x 20 s @ 5000 rpm; 2 x 20
s @ 5000 rpm (200 mg), 10 s
pause

Rat & mouse: sperm

Protein (native)

500 l PBS, with Cryolys-cooling (level


1)

SK38

1 x 25 s @ 5500 rpm

Rat: heart
(1/2)

Drugs

H2O; successful measurement of both


drugs in dead tissue

CK14

2 x 15 s @ 6500 rpm

Rat: brain, muscle


(450 mg, 200 mg)

Drugs

2 Vol NaCL solution, use of MINILYS,


successful LC-MS/MS analysis

CKM

Brain: 2 x 45 s @ 5000 rpm


muscle: 3 x 40 s @ 5000 rpm

Rat: brain
(complete, approx. 1,7 g)

Drugs

2 Vol NaCL solution, use of MINILYS,


successful LC-MS/MS analysis

CK28L + 2
beads CK50

2 x 45 s @ 5000 rpm

Rat: brain
(entire, 1 g)

Drugs

4 ml 70 % Acetonitril

CK28L

2 x 10 s @ 5500 rpm

Rat: lung
(1,2 1,4 g)

Drugs/chemicals

3 Vol Acetonitril/0,9 % NaCL


(50/50v), successful analysis

CK28L

2 x 20 s @ 6500 rpm

Rat: liver, heart, kidney, testes,


adipose tissue (500 mg)

Phenol

1 ml ethanol

CK141

1 2 x 5 s, 10 s, oder 20 s @
6250 rpm

12

MK28; CK28

2 x 30 s @ 6500 rpm
15 s pause

CK14

2 x 10 s @ 5000 rpm,
10 s pause

MK28R

2 x 30 s @ 6500 rpm Dry; 30


s pause dann 1 x 30 s @
6500 rpm with buffer

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Precellys Application Database_Lysis protocols_Human & animal cells & tissues_v0413e

Human and animal cells and tissues


Target molecule
(yield)

Rat: heart
(40 mg)

Enzyme activity

250 l HEPES 5mM, EGTA 1mM,


Triton 0.1%, DTT 1mM, pH 8.7, successful gemessen

CK14

2 x 8 s @ 6500 rpm
8 s pause

Rice fish (Medaka): liver, spleen,


skin, testes, embryos

RNA

500 l TriFast, RNA yield comparable


with Ultrathurrax

CK14;
CKM

2 x 20 s @ 5000 rpm; 10 s
pause

RNA

200 l TriFast

Sheep: bones & joints


(approx. 2 x 2 x 3 mm piece)

RNA

500 l RLT

CK28

2 x 20 s @ 6200 rpm,
15 s pause

Sheep: muscle & stomach


(50 mg)

RNA

500 l RLT

CK14

2 x 20 s @ 6200 rpm,
30 s pause

Sheep: teeth
(approx. 2 x 2 x 3 mm piece)

RNA

500 l RLT

MK28

2 x 20 s @ 6200 rpm,
15 s pause

Shellfish: ligaments

RNA

Qiagen RNA extraction kit

SK38

2 x 15 s @ 6000 rpm

Shellfish: gills

RNA

Qiagen RNA extraction kit

CK28

2 x 20 @ 6000 rpm

Shellfish: muscle

RNA

Qiagen RNA extraction kit

SK38
MK28R

2 x 20 s @ 6500 rpm

Sponge (sea-): Suberite domuncula olivi

Protein, enz. activity

Lysis buffer: 5 mM Tris, 0.05 M NaCl


and 0.001% Tween2O and 1% protease inhibitor

CK14

3 x 7 s @ 5600 rpm
30 s pause

Sponge (sea-): glass sponge

Biosilika

Dest. water

MK28R

8 x 25 s @ 6800 rpm

Shrimps
(100 mg)

DNA
(high yield)

500 l TE; good PCR results

CK28

2 x 30 s @ 6500 rpm
30 s pause

Tapeworm (Taenia)

RNA

1 ml peqGOLD TriFast

CK14

3 x 20 s @ 6500 rpm
30 s pause

Tick

DNA

200 l lysis buffer with SDS

CKM

3 x 20 s @ 6500 rpm;
20 s pause

Tick

DNA (Rickettsia)

320 l minimum essential cell culture


medium; amplification of a fragment of
the gltA gen from rickettsia

MK28

2 x 30 s @ 5000 rpm
15 s Pause

Tick

RNA

MK28R

3 x 30 s @ 6000 rpm

Trematodes (parasites)

DNA

0,9 % NaCl buffer

Wale: muscle

DNA

Qiagen extraction kit

CK28

2 x 20 s @ 6000 rpm

Wale: skin

DNA

Qiagen extraction kit

CK14
SK38

2 x 20 s @ 6000 rpm

Wale: liver

RNA

Qiagen extraction kit

CK14

2 x 15 s @ 5000 rpm

Water flea (Daphnia magna)

RNA

320 l methanol + 128 l H2O

CK14

2 x 10 s @ 6400 rpm

Water flea (Daphnia magna)


(entire, frozen)

Metabolites

Dry, after homogenisation a methanolH2O-chloroform mixture was added

CK14

2 x 10 s @ 6400 rpm
30 s pause

Zebra fish

RNA

VK05

3 x 10 s @ 6000 rpm

Zebra fish: larvae

Protein

CK14S

1 x 20 s @ 5000 rpm

Schistosoma (wurm-like parasite)


100 wurms ( 5 mm)

Buffer conditions/remarks

Precellys parameters
(number of cycles, time period, rpm, pause)

Starting material
(amount)

Homogenate with MINILYS was better


than using mortar and pistill

13

PCS-Kit

CK14s + 2
beads CK28

1-2 x 15 s @ 6500 rpm

3 x 30 s @ 6200 rpm
30 s pause

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Precellys Application Database_Lysis protocols_Human & animal cells & tissues_v0413e

Human and animal cells and tissues


Starting material
(amount)

Target molecule
(yield)

Zebra fish: embryos


(Schmid Mnchen)

Protein

Buffer conditions/remarks
div. SDS-containing buffer; satisfying
homogenates, with Cryolys-cooling
(level 1)

14

PCS-Kit

Precellys parameters
(number of cycles, time period, rpm, pause)

VK05S;
CK14S

1 x 25 s @ 5500 rpm

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