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H2 C HEMISTRY
Notes by Zhuoyi | Consolidated & Updated by Kevin
CONTENTS
PERIODICITY
ORGANIC CHEMISTRY MECHANISMS
BIOCHEMISTRY SUMMARY
PHYSICAL & CHEMICAL PROPERTIES
HALOGENS CHEAT SHEET
DEFINITIONS
THINGS TO NOTE
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PAGES
2
6
8
10
13
14
16
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CHEMICAL PERIODICITY
Zeff = Z
PHYSICAL PROPERTIES
Property
Atomic radii decrease across
a period
Explanation
Zeff increases across a period. The number of protons, and thus Z, increases, while
remains approximately constant as the number of fully filled inner principle quantum
shells remain the same
Zeff decreases descending a group. The number of protons, and thus Z, increases, while
increases as the number of fully filled inner principle quantum shells increases
Li
Na
Be
Mg
Al
Metal
Metallic
Strong metallic bonds
C*
Si
Metalloid
Giant Molecular
N
P
O
F
S
Cl
Nonmetal
Simple Molecular
Weak VDW forces
Bonding
mp/bp
High
Good conductors
Very High
Poor conductors
Low
Electrical
conductivity
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Insulators
No mobile valence e-
Ne
Ar
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Gp IV
Gp V
Gp VII
Strongly reducing
Strongly
oxidising
Gp VI
Gp III
Gp II
Gp I
C H E M IC A L PR O P E R T I E S
Reaction with dry
oxygen and heat
pH in
water
Na
4Na + O2 2Na2O
Vigorous
13
Mg
2Mg + O2 2MgO
Very vigorous
Mg + Cl2 MgCl2
Vigorous
Mg + H2O MgO + H2
Vigorous reaction with steam
Al
Si
Si + O2 SiO2
Slow
Si + 2Cl2 SiCl4
Slow
No reaction
P4 + 3O2 P4O6
P4O6 + 2O2 P4O10
Vigorous
P4 + 6Cl2 4PCl3
PCl3 + Cl2 PCl5
Slow
No reaction
S + O2 SO2
2SO2 + O2 2SO3
Slow
S8 + 4Cl2 4S2Cl2
S2Cl2 + Cl2 2SCl2
Slow
No reaction
Cl
Cl2 + H2O
HOCl + HCl
Acidic solution formed
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OXIDES + PROPERTIES
Oxide
Oxidation number
MgO
Al2O3
SiO2
+1
+2
+3
+4
+1, +4. +7
Ionic
Giant ionic lattices
Covalent
Simple molecular
Giant covalent
Solid
Gas, solid
High bp due to large amount of energy required to break ionic bonds in the
lattice (Na, Mg, Al) or giant covalent structure (Si)
Gas, liquid
Very poor
No conductivity
No charged particles
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SO2(g) + H2O(l)
H2SO3(aq)
Cl2O(g) + H2O(l)
2HClO(aq)
P4O10(g) + 6H2O(l)
4H3PO4(aq)
SO3(l) + H2O(l)
H2SO4(aq)
Cl2O7(l) + H2O(l)
2HClO4(aq)
Cl2O(g) + 2NaOH(aq)
2NaClO(aq) + H2O(l)
Amphoteric
Acidic
Mg(OH)2(aq) + 2HNO3(aq)
Mg(NO3)2(aq) + 2H2O(l)
MgO(s) + 2HCl(aq)
2MgCl2(aq) + H2O(l)
NaOH(aq) + HCl(aq)
NaCl(aq) + H2O
Basic;
Hydroxides are strongly alkaline
Strongly acidic
P4O6(g) + 6H2O(l)
4H3PO3(aq)
MgO(s) + H2O(l)
Mg(OH)2(aq)
P4O10(g) + 12NaOH(aq)
4Na3PO4(aq) + 6H2O(l)
Na2O(s) + H2O(l)
2NaOH(aq)
SiO2(s) + 2NaOH(aq)
Na2SiO3(aq) + H2O(l)
Weakly alkaline
+
2Na [Al(OH)4] (aq)
Strongly alkaline
Insoluble
Al2O3(s) + 6HCl(aq)
AlCl3(aq) + 3H2O(l)
Sparingly soluble
9
Good
Soluble
12
Na2O(s) + 2HCl(aq)
2NaCl(aq) + H2O(l)
State at 20C
Oxide &hydroxide
acid-base behaviour
Cl2O7(g) + 2NaOH(aq)
2NaClO4(aq) + H2O(l)
Bonding
Structure
pH of solution
SO2
SO3
+4, +6
Molten electrical
conductivity
Solubility in water
P4O6
P4O10
+3, +5
P4O6(g) + 12NaOH(aq)
4Na3PO3(aq) + 6H2O(l)
No. of valence e
Na2O
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C H L OR I D E S + P R O P E R T I E S
Oxide
NaCl
MgCl2
+1
+2
AlCl3
SiCl4
+3
+4
PCl3
PCl5
+3, +5
SCl2
S2Cl2
+1, +2
Oxidation number
Simple molecular
Simple molecular
Comparable e-negativities
of Al and Cl
Liquid
Very poor
Solubility in water
Dissolves
Good
Equations
Slightly acidic
Strongly acidic
2+
pH
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No conductivity
Conducts electricity in
aqueous solution
6.5
Liquid, gas
2S2Cl2(l) + 2H2O(l)
3S(s) + SO2(aq) + 4HCl(g)
SiCl4(l) + 2H2O(l)
SiO2(s) + 4HCl(g)
Molten electrical
conductivity
Liquid, gas
Weak VDW forces
PCl5(l) + 4H2O(l)
H3PO4(aq) + 5HCl(g)
Solid
Na, Mg: Large amount of energy required to break ionic bonds
AlCl3(s) + 6H2O(l)
3+
[Al(H2O)6] (aq) + 3Cl (aq)
State at 20C
PCl3(l) + 3H2O(l)
H3PO3(aq) + 3HCl(g)
Structure
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ORGANIC CHEMISTRY MECHANISM SUMMARY
F R E E R A D I C A L S U B S T IT U T I O N ( FR S )
Exemplified by the substitution of methane by chlorine
Step 1: Intitiation
Step 2: Propagation
uv
a) Cl + CH4 CH3 + HCl
ClCl
Cl + Cl
b) CH3 + Cl2 CH3Cl + Cl
Then (a), (b), (a), (b)
Step 3: Termination
a) Cl + Cl Cl2
b) CH3 + Cl CH3Cl
c) CH3 + CH3 CH3CH3
E L E C T R O P H I L IC A D D I T I O N
Exemplified by the addition of HBr to an alkene
H
C
Step 1
slow
Br
C
+
Br
carbocation intermediate
H
H
Step 2
C
+
H H
-
fast
:Br
C C H
H Br
E L E C T R O P H I L IC A R O MA T I C S U B S T IT U T I O N
Exemplified by the addition of NO2 to benzene
Step 1
+
+
NO2 + H3O + 2HSO4
Generation of HNO3 + 2H2SO4
electrophile
H
Step 2
Electrophilic
attack
NO 2
slow
NO 2
+
benzonium ion
H
Step 3
Loss of proton
HSO4
NO 2
NO 2
fast
H2SO4
N U C L E O PH I L I C S U B S T IT U T I O N S N 2 O N E S T E P
R3
Nu :
C X
R1 R
R3
Nu
R1
X
R2
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R3
Nu
+ X
C
R2
R1
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N U C L E O PH I L I C S U B S T IT U T I O N S N 1 T W O ST E P
-
Nu :
R3
X
slow
R3
R3
fast
R1 R2
R1 R2
Nu
R3
R1 R2
: Nu
carbocation intermediate
(planar)
Nu
R2 R
1
two products
racemic mixture
N U C L E O PH I L I C A D D I T IO N
-
Step 2
Nucleophilic
attack
KCN
K + CN
CN
H3C
:CN
slow
H3C
CN
H3C
Step 3
H
CN
Protonation
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fast
H3C
OH
H
Cyanohydrin
CN
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BIOCHEMISTRY
AMINO ACIDS
Amino acids are zwitterionic forms strong ionic bonds at isoelectric point (pI)
Solubilities of amino acids are at a minimum at pI. Lattice energy is most exothermic at this point as
the zwitterions experience the greatest ionic attraction
Zwitterions have high melting points due to strong ionic bonds
Negatively charged
Aspartic acid
(-CH2COOH)
-R-CONH-R-
+
-R-COOH + H3N -R-
Positively charged
Lysine (-(CH2)4NH2)
Uncharged
Serine (-CH2OH)
Cysteine (-CH2SH)
Basic hydrolysis
OH- , heat
R-CONH-R
-R-COO + H2N-R-
Enzymatic hydrolysis
May be catalyzed by enzymes like
trypsin, pepsin etc.
PROTEINS
The primary structure of a protein refers to the number and sequence of amino acids in a polypeptide chain.
E.g.: ala-gly-leu-tyr-his-ala-leu-phe
The secondary structure of a protein refers to the local spatial conformation of the polypeptide backbone, in the form of
either -helices or -pleated sheets.
-helix
-pleated sheet
Right-hand screw
Haemoglobin as an example
o Formed from four polypeptide chains
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DENATURATION OF PROT EINS
Denaturation refers to the disruption in the secondary, tertiary and quaternary structure of proteins by the breaking of the
non-covalent (but including disulphide bridges) interactions that hold these structures in their native conformation.
Effect of Temperature
If pH is lowered far below pI, the protein will only contain positive charges
Like charges repel each other and cause the denaturation of proteins
Compete with positively charged groups for attraction with negatively charged groups
2+
ENZYMES
Enzymes are biological catalysts they increase the rate of reaction without themselves being changed at the en d of the
reaction. They catalyze reactions by providing an alternate route of reaction with lower activation energies.
Characteristics
Specificity: only certain substrates are acted upon by enzymes, and only a single type of reaction takes place
Large catalytic power: some enzymes can speed up reactions by a billion times
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PHYSICAL & CHEMICAL PROPERTIES
ATOMIC STRUCTURE
Property
The 4s orbital is filled
before the 3d orbital
Electrons are first lost
from the 4s orbital
Cr has one electron in its
4s orbital
Cu has one electron in its
4s orbital
Subsequent IEs are
higher
IE increases across a
period
st
1 IE of Al < Mg
st
1 IE of Be < B
nd
2 IE of Si < Al
etc.
st
1 IE of S < P
st
1 IE of O < N
nd
2 IE of Cl < S
etc.
nd
2 IE of Na >> Mg
Explanation
The 4s orbital is at a lower energy level than the 3d orbital, following Aufbaus principle,
orbitals of lower energy are filled up first.
When the 3d orbital is filled, it descends to a lower energy level than than the 4s orbital,
causing the 4s orbital to be further away from the nucleus, enabling electrons to be lost from
the 4s orbital first
Chromium has one electron in its 4s orbital to minimize electron-electron repulsion within the
3d orbital
Copper has one electron in its 4s orbital to form a symmetrical charge distribution around the
centre, forming a full metal centre
Subsequent atoms are being removed from a nuclei with an increasing positive charge,
making them more difficult to remove
Across a period, there is increasing nuclear charge, but approximately constant shielding
effect from inner shell electrons, leading to an increase in effective nuclear charge (electrons
are harder to remove)
2 2
6 2
1
+
2 2
6 2
Al: 1s 2s 2p 3s 3p Al : 1s 2s 2p 3s 3p electron is removed
2 2
6 2
+
2 2
6 1
Mg: 1s 2s 2p 3s Mg : 1s 2s 2p 3s
3s electron is removed
Less energy is required to remove a 3p electron compared to a 3s electron since the 3p
electron is higher in energy, it has a lower penetrating power and is thus more easily removed
For S : removal of a paired 3p electron
For P : removal of an unpaired 3p electron
Repulsion between the two paired 3p electrons in S make it easier for one of the electrons to
be lost, hence the IE of S is lower
+
2 2
6
2+
2 2
5
Na : 1s 2s 2p Na : 1 s 2s 2p
2p electron is removed
+
2 2
6 1
2+
2 2
6
Mg : 1s 2s 2p 3s Mg : 1s 2s 2p 3s electron is removed
+
nd
The electron removed form Na is in the 2 principle quantum shell, which experiences much
less shielding effect from inner-shell electrons, which outweighs the lower nuclear charge on
+
rd
Na as compared to the electron removed from Mg is in the 3 principle quantum shell
Read Mr Wongs Chemical Bonding discussion at
http://sg.geocities.com/tzeyang111777/chemistry/bonddis2.swf
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ALKANES
Property
Explanation
Non-polar
Difference in electronegativities of C and H atoms are negligible (id-id interactions)
bp/mp increases with
A larger electron cloud is more easily polarized and id-id interactions become greater, and
molecular size
since boiling involves the breaking of IMF, bp and mp increases with molecular size
bp/mp decreases with
A branched isomer has a smaller surface area and hence a lower extent of IMF between its
branching
molecules
Insoluble in polar solvents, soluble in non-polar solvents
Density increases with molecular size; less dense than water
Unreactive
Non-polar and saturated and do not contain any region of high e density
ALKENES
Property
Similar to alkanes
cis- isomers have higher bps
than trans- isomers
cis- isomers have lower mps
than trans- isomers
Explanation
The cis- isomer is polar and has pd-pd as well as id-id interactions, while the trans- isomer
has only id-id interactions
trans- isomers pack better into a crystal lattice and have higher mps than cis- isomers
HALOGEN DERIVATIVES
Property
Less reactive than benzene (in
ES)
Ar-X less reactive to SN as
compared to R-X
Higher bp/mp than
corresponding alkane
Explanation
Highly electronegative halogen deactivates the ring
Partial double bond character in the arene C-X bond due to p-orbital overlap with the
-cloud
The presence of the e rich ring hinder nucleophilic attack
The alkane is non-polar and has only id-id interactions, where R-X has a polar bond and
hence pd-pd interactions. Also, the number of e is larger, increasing id-id interactions.
HYDROXY COMPOUNDS
Acidity: The stability of the acid anion determines the acidity of a compound
Ethanol
<
Water
<
Phenol
alkoxide ion is destabilized by the
Neither destabilizing or stabilizing
The phenoxide ion is stabilized by the
positive inductive effect of the e
effects are present
delocalization of the negative charge
donating alkyl groups
into the benzene ring
Effects of substituents
Ethanol
Phenol
e releasing groups on the hydroxyl carbon decreases acidity e releasing groups decreases the acidity of phenol as it
as it intensifies the negative charge on the oxygen, reduces the delocalization of the negative charge on the
destabilizing the anion
oxygen into the ring, destabilizing the anion; the opposite is
true for e withdrawing groups
CARBONYL COMPOUNDS
Property
Higher bp than corr alkane,
lower bp than corr alcohol
Solubility in water decreases as
number of C increases; soluble
in organic solvents
Explanation
pd-pd interactions as compared the id-id interactions in alkanes
lack of h-bonding when comparing with alcohols
Unable to form h-bonding with water. Higher carbonyl compounds have larger
hydrophobic groups.
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CARBOXYLIC ACIDS AND DERIVATIVES
Property
Higher bp than corr alkanes and alcohols
Boiling point
Solubility
(non-polar
solvents)
Solubility
(polar solvents)
Explanation
RCOOH form stronger intermolecular hydrogen bonds than alcohols because
the OH group is more polarized due to the presence of the e withdrawing
C=O group
Increase in the number of e strengthens id-id interactions
See solubility in carbonyl compounds
The RCOO anion is resonance stabilized due to the delocalization of the
negative charge over two highly electronegative O atoms
See effects of substituents in Alcohols
Ka increases with number of e withdrawing groups
Ka increases with distance of e withdrawing groups from COOH
Acyl chlorides
Esters
Unable to form h-bonding, and experience pd-pd
interactions and have lower boiling points than their parent
carboxylic acids
Soluble
Insoluble
RCOCl hydrolyzes rapidly in
water to form RCOOH
Solubility decreases with size of hydrophobic group
Amides
Amides have a NH2 group and can form
a higher degree of h-bonding, and
usually have higher boiling points than
their parent carboxylic acids
Fairly soluble in water due to h-bolding
Ease of SN
RCOCl
>
RCl
Highly polarized alpha-carbon as it is
Less polarized alpha-carbon as it is
bonded to two highly electronegative
only bonded to one electronegative
atoms
atom
2
3
sp hybridized C experiences less steric sp hybridized C experiences more
hindrance (trig-planar)
steric hindrances (tetra)
>
ArCl
Electron-rich benzene ring repels
nucleophile
Partial-double bond character makes
C-Cl bond harder to break
NITROGEN DERIVATIVES
Property
Higher bp than corr alkanes,
lower bp than corr alcohols
bp increases with molecular size
Lower members are highly
soluble in water (max 5C in
amines)
Amides are polar
Tertiary amides have low bp
Amides are neutral
Explanation
O-H h-bond is stronger than N-H h-bond as O is more electronegative
Increase in size of electron cloud increases polarizability resulting in greater IMF
h-bonding with water formed easily for both amines and amides; solubility decreases
in higher members due to greater hydrophobic nature (also, phenylamine)
The highly electronegative N is bonded to H, forming h-bonding
They do not form h-bonding with each other due to the absence of a N-H bond,
however the form h-bonding with water and hydroxylic solvents
The lone pair on N id delocalized over the O-C-N moiety
Basicity of amines: The ability to donate the lone pair on N determines basicity
ArNH2
<
RRRNH
<
NH3
<
RNH2
<
RRNH2
The lone pair on N is
Tertiary amines have
Electron releasing R groups increase basicity as they
delocalized into the
relatively low basicity due to
increase the electron density of the lone pair on N, making
-cloud, making it
steric hindrance from three
it so very big more available to accept a proton
less available for dative
bulky R groups
bonding
Effect of substituents on ArNH2: Kb decreases with e withdrawing substitutents, and vice versa
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HALOGENS
Down group VII
Volatility decreases
Atomic and ionic
radii increase
Electronegativity
decreases
Oxidising power
decreases
BDE decreases
EXCEPT for F2
Explanation
Boiling involves the overcoming of id-id interactions between the halogen molecules. The size of the
electron cloud increases descending the group, and thus becomes more polarizable. Hence, boiling
point increases.
Effective nuclear charge decreases. Both nuclear charge and shielding increase, but the latter to a
more significant extent.
From standard electrode potential values
Atomic size increases due to decreasing effective nuclear charge. The orbitals are less diffuse, and
the orbital overlap is consequently less effective.
For F2: There is great electrostatic repulsion between the lone pairs on the F atoms in F2, leading to
a less effective orbital overlap between the bonding orbitals.
REACTIONS
2F2(g) + 2H2O 4HF(aq) + O2(g)
Cl2(g) + 2H2O 2HOCl(aq) + HCl(g)
2HOCl 2HCl(aq) + O2(g)
F2 oxidizes water
Cl2 oxidizes water
Halogens disproportionate in cold, aqueous alkalis
to give halide and halate (I) ions
Halogens disproportionate in hot, aqueous alkalis
to give halide and halate (V) ions
Halogens react with hydrogen to form hydrogen
halides
The vigour of reaction is dependent on the halogens
oxidising power
HYDROGEN HALIDES
Down group VII
Thermal stability
decreases
Acidity of increases
Explanation
Down Group VII, the valence orbitals become more diffuse, resulting in less effective orbital
overlap, hence a weaker H-X bond is formed,
Acidity depends on HX bond strength. Since H-X bond strength decreases down the group, acidity
increases down the group.
REACTIONS
HBr and HI are oxidised when heated with
concentrated H2SO4
METAL HALIDES
Colour
Excess NH3(aq)
conc NH3(aq)
Effect of sunlight
AgCl
White
Soluble*
Soluble
Turns grey
AgBr
Cream
Insoluble*
Soluble
Turns yellow
AgI
Yellow
Insoluble*
Insoluble
No visible change
REACTIONS
Heating MX in concentrated H2SO4 produce their
hydrogen halides.
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DEFINITIONS
ORGANIC CHEMISTRY
Enantiomers
Stereoisomers which rotate plane-polarized light in
opposite directions
H r H soln [CuSO4(s)]
Racemic mixture
A mixture of equal proportions of enantiomers where
there is no net optical activity
H r H hyd [Na]
Meso compound
An optically inactive compound with a plane of
symmetry and more than one chiral center.
Bond energy - BE
The average energy absorbed when 1 mole of X-Y bonds
are broken in gaseous state
CH4(g) C(g) + 4H(g)
=
H r 4BE [C-H]
Electrophile
Electron-deficient species
Nucleophile
Electron-rich species
ENERGETICS
Hess Law states that the enthalpy change of a reaction
is determined by the initial and final state of the system
and is independent of the pathway taken.
Hr Hf [H2O(l)]
Hr Hc [C(s)]
H r H neut
H r H atom [H2(g)]
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nd
H r = 2 IE [Na]
st
st
H r = 1 EA [Cl]
nd
nd
H r = 2 EA [Cl]
Lattice energy - |LE|
The heat change when 1 mole of pure solid ionic
compound is formed from its constituent gaseous ions
under standard conditions
2+
Mg (g) + 2Cl (g) MgCl2(s)
H r = |LE| [MgCl2(s)]
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IONIC EQUILBRIA
Brnsted-Lowry theory of acids and bases
A acid is a proton donor. A base is a proton acceptor. An
acid-base reaction involves the transfer of a proton from
an acid to a base.
KINETICS
Rate Equation
A mathematical equation that shows how the rate of
reaction is dependent on the concentrations of the
reactants. It relates the rate of reaction to the
concentrations of the reactants raised to the
appropriate power.
Strong acid
An acid which undergoes complete dissociation in
aqueous solution
Weak acid
An acid which undergoes partial dissociation in aqueous
solution
Rate constant k
A proportionality constant in the rate equation of the
reaction
Order of reaction w.r.t. a reactant
The power to which the concentration of that reagent is
raised in the rate equation
Overall order or reaction
The sum of all powers to which concentrations of
reactants are raised in the rate equation
Half-life t
The time required for the concentration of a limiting
reagent to decrease to half of its initial concentration
CHEMICAL EQUILIBRIA
Reversible reaction
Reactions that take place in both directions at
comparable rates
Static equilibrium
A state in which there is no change in both macroscopic
and microscopic properties in a system
Dynamic equilibrium
A reversible reaction in which the rate of the forward
and backward reactions are equal and nonzero.
Degree of dissociation
The fraction of a reactant that has dissociated at a
particular temperature
Apparent molecular mass Mapp
The weighted average of the relative molecular masses
of all gases present in equilibrium
Le Chateliers Principle states that if a system in
equilibrium is subjected to a change which disturbs the
equilibrium, the system responds in such a way as to
counteract the effect of the change.
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Strong base
A base which undergoes complete ionization in aqueous
solution
Weak base
A base which undergoes partial ionization in aqueous
solution
Degree of ionization
The fraction of molecules which is ionized at equilibrium
Buffer solution
A solution which is able to resist a change in pH upon
the addition of a small amount of acid or base
ELECTROCHEMISTRY
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THINGS TO NOTE
GASES
ORGANIC CHEMISTRY
pV=nRT
p
Pa
atm
V
3
m
3
dm
R
8.31 J
0.082
ARENES
Reactivity of attached groups and how they direct.
Activiating More reactive
Amine -NH2
Hydroxy -OH
Alkyl (CH2)nCH3
Aryl C6H5
reference! H
Halogen -Cl, -Br, -I
Aldehyde -CHO
Ester -COOCarboxylic acid -COOH
Ketone -CONitrile -CN
Nitrite -NO2
Deactivating Less reactive
2,4 Directing
n = C (H + X N) + 1
3 directing
DISTINGUISHING TESTS
Remember to give the following
1. Reagents and conditions
2. Observations
3. Equations
MECHANISM DRAWING
1.
2.
3.
4.
STEREOISOMERISM
5.
CHEMICAL BONDING
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