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2015/07/16
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Atsushi Nakajima
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Daikinrin Daily Document Alert
D Alert # 9
20150716-1
- the latest mycological papers from Google Scholar

Created byAtsushi Nakajima (@Ats_Nakajima) CC BY 4.0
Search Date
2015/07/16
Two New Cuboid-Spored Species of Entoloma sl (Agaricales, Entolomataceae) from

Southern China
Bibliographic information
XL He, E Horak, TH Li, WH Peng, BC Gan - Cryptogamie, Mycologie, 2015 - BioOne
URL
http://www.bioone.org/doi/full/10.7872/crym/v36.iss2.2015.237
Abstract/Summary
Abstract Two cuboid-spored species of Entoloma (E. laccarioides and E. parvifructum) are described from S-China. Entoloma laccaroides is
recognized by the umbilicate and whitish pileus, cuboid basidiospores, numerous conspicuous broadly fusoid to utriform pleurocystidia,
cutis-like pileipellis with intracellular pigment, and presence of clamp connections. Entoloma parvifructum is characterized by the small,
conico-convex and pale brown to brown pileus, comparatively large cuboid basidiospores, and cutis-like pileipellis with intracellular and
encrusting pigment. The phylogenetic position and taxonomic relationships of E. laccaroides are compared and discussed with nrLSU
sequences reported for various other cuboid-spored species kept in GenBank.
Comment (brief comment in Japanese)
Related taxa
(extracted from title and abstract/summary)
Keywords(auto-indexed)
Entoloma,,,,
D Alert # 9
20150716-2

Search Date
2015/07/16
Studies in the Bark-Dwelling Species of Hymenochaete (Hymenochaetales,

Basidiomycota) Reveal Three New Species
V Spirin, K Runnel, K Pldmaa - Cryptogamie, Mycologie, 2015 - BioOne
URL
Abstract/Summary
Abstract Three new species of Hymenochaete from Russian Far East are described based on morphological and ITS rDNA data.
Hymenochaete adhaerens sp. nov. is a resupinate species closely related to H. macrospora, from which it differs in having longer
basidiospores and setae. The basidiocarps of H. cupulata sp. nov. are effused-reflexed, resembling those of the European H. ulmicola, from
which it differs in having setae inflated at the basal part and shorter basidiospores. Both H. adhaerens and H. cupulata inhabit bark of living
elm trees (Ulmus spp.). H. manshurica sp. nov. is resupinate and morphologically similar to the North American H. corticolor, from which it
differs in having narrower setae and basidiospores; it has been collected from bark of living Tilia manshurica.
Related taxa
Hymenochaete,,,
Hymenochaetales,Basidiomycota
/Tilia,
Hymenochaete adhaerens,,,
/Hymenochaete, /Ulmus,
/new species
D Alert # 9
20150716-3

Search Date
2015/07/16
Fungal Biodiversity Profiles 110
1-10
S Adamk, L Cai, D Chakraborty, XH Chen - Cryptogamie, , 2015 - BioOne
URL
Abstract/Summary
Abstract The authors describe ten new taxa for science using mostly both morphological and molecular data. In Ascomycota, descriptions
are provided for Bambusistroma didymosporum gen. et spec. nov. (Pleosporales), Neodeightonia licuriensis sp. nov. (Botryosphaeriales) and
Camposporium himalayanum sp. nov. (Fungi imperfecti). In Zygomycota, Gongronella guangdongensis sp. nov. (Mucorales) is described.
Finally, in Basidiomycota descriptions are provided for Boidinia parva sp. nov. and Russula katarinae sp. nov. (Russsulales), Gloiocephala
parvinelumbonifolia sp. nov. (Agaricales), Hypochnicium austrosinensis sp. nov. (Polyporales), Phallus ultraduplicatus sp. nov. (Phallales)
and Suillus lariciphilus sp. nov. (Boletales).
Related taxa
AscomycotaPleosporales,,
Neodeightonia,,,
Botryosphaeriales,Camposporium
ZygomycotaGongronella,,
MucoralesBasidiomycotaBoidinia,,
,Russula,,,
Gloiocephala,,,,
Agaricales,,Hypochnicium,
,,Polyporales,Phallus
D Alert # 9
20150716-4

Search Date
2015/07/16
Lachancea quebecensis sp. nov., a yeast species consistently isolated from tree bark
in the Canadian province of Qubec
Lachancea quebecensis
KC Freel, G Charron, JB Leducq - of Systematic and , 2015 - Soc General Microbiol
URL
http://ijs.sgmjournals.org/content/journal/ijsem/10.1099/ijsem.0.000426
Abstract/Summary
Preview this:
A thorough sampling of maple, oak, birch, and apple tree bark in North America yielded a set of isolates that represent a
yeast species not yet formally described. The strains obtained were all isolated from the Canadian province of Qubec. These four isolates
have identical electrophoretic karyotypes, distinct from other Lachancea species, and are most closely related to the formally recognized
species L. thermotolerans according to the D1/D2 domain of the LSU rDNA gene and 5.8S-ITS region. Previous studies revealed the
existence of a population of strains closely related to L. thermotolerans, with unique D1/D2 sequences and the ability to grow on melibiose,
which is also true for these isolates. The sequences obtained here (for the D1/D2, and 5.8S-ITS region) are identical among the four strains,
and in a phylogenetic analysis of the D1/D2 region, they form a distinct genus with the previously described population closely related to L.
thermotolerans, composed of isolates from Japan, as well as the provinces of Ontario and Qubec in Canada. On the basis of select
physiological and phylogenetic characteristics, a novel ascosporogenous yeast species, Lachancea quebecensis sp. nov., is proposed. The
type strain LL11_022T (=CBS 14138T =CLIB 1763T =UCDFST 15-106T) was isolated from maple tree bark in the Station Duchesnay, QC
region of Qubec, Canada. The MycoBank number is MB811749.
Related taxa
Lachancea,,,,
/Ontario, /Canada,
/Japan, /yeast
D Alert # 9
20150716-5

Search Date
2015/07/16
Revision of the genus Bulbothrix (Parmeliaceae, Lichenized Ascomycota) in NE

Argentina, with a Key to the Species
Bulbothrix
A Michlig, MN Benatti - Cryptogamie, Mycologie, 2015 - BioOne
URL
Abstract/Summary
Abstract Eight species belonging to Bulbothrix Hale from NE Argentina were studied. Among them, Bulbothrix affixa (Hale & Kurok.) Hale is
a new continental record, and five species, viz. B. cassa Jungbluth, Marcelli & Elix, B. coronata (Fe) Hale, B. isidiza (Nyl.) Hale, B.
laeviuscula (Rsnen) Benatti & Marcelli, and B. tabacina (Mont. & Bosch) Hale, are new citations for the country. The specimens are
described, commented, and illustrated. A key for species identification is also presented.
Related taxa
Bulbothrix,,,,
Parmeliaceae,,,
/Argentina,
AscomycotaBulbothrix affixa,,
/Parmeliaceae
,,
D Alert # 9
20150716-6

Search Date
2015/07/16
Additions to Brown Spored Coelomycetous Taxa in Massarinae, Pleosporales:

Introducing Phragmocamarosporium gen. nov. and Suttonomyces gen. nov.
Massarinae
PhragmocamarosporiumSuttonomyces
NN Wijayawardene, KD Hyde, DJ Bhat - Cryptogamie, , 2015 - BioOne
URL
Abstract/Summary
Abstract Three collections of coelomycetes producing brown spores have been subjected to morphological and molecular data analyses. Two
of them have phragmosporous conidia and are morphologically similar to Camarosporium hederae which has the distinct morphology of
Camarosporium sensu stricto. The other collection with muriform conidia is morphologically similar to Camarosporium sensu stricto but has
paraphyses. Based on morphology and molecular data analyses of combined LSU and SSU rDNA sequences, two new genera are introduced
viz. Phragmocamarosporium (in Lentitheciaceae) and Suttonomyces (in Massarinaceae).
Related taxa
Pleosporales,,Camarosporium
,,Camarosporium hederae
/coelomycetes
,,Lentitheciaceae,
,,Massarinaceae,,
,
D Alert # 9
20150716-7

Search Date
2015/07/16
Poaceascoma helicoides gen et sp. nov., a New Genus with Scolecospores in

Lentitheciaceae
Poaceascoma helicoides
R Phookamsak, DS Manamgoda, WJ Li, DQ Dai - Cryptogamie, , 2015 - BioOne
URL
Abstract/Summary
Abstract An ophiosphaerella-like species was collected from dead stems of a grass (Poaceae) in Northern Thailand. Combined analysis of
LSU, SSU and RPB2 gene data, showed that the species clusters with Lentithecium arundinaceum, Setoseptoria phragmitis and
Stagonospora macropycnidia in the family Lentitheciaceae and is close to Katumotoa bambusicola and Ophiosphaerella sasicola. Therefore, a
monotypic genus, Poaceascoma is introduced to accommodate the scolecosporous species Poaceascoma helicoides. The species has similar
morphological characters to the genera Acanthophiobolus, Leptospora and Ophiosphaerella and these genera are compared.
Related taxa
Lentitheciaceae,,,
Lentithecium,,,
/Poaceae, /Thailand
Lentithecium arundinaceum,,,
Setoseptoria,,,
Setoseptoria phragmitis,,,
Stagonospora,,,
,Stagonospora macropycnidia,,
,,Katumotoa,
,,,Katumotoa
D Alert # 9
20150716-9

Search Date
2015/07/16
The Study of Russula in the Western United States
B Buyck, S Janoviov, S Adamk - Cryptogamie, Mycologie, 2015 - BioOne
URL
Abstract/Summary
Abstract A short history to the study of Russula in the Western United States is provided and for the first time an exhaustive list of all 49
taxa described from this part of the country has been compiled. As a start to a revision of these species, a first series of four holotypes (one
from California and three from the Pacific Northwest) have here been studied microscopically, resulting in some very substantial changes
concerning species concept and consequent systematic placement. Russula flava var. pacifica appears unrelated to the type variety. It is
therefore excluded as member of Integroidinae, subgen. Polychromidia, and deserves probably to be upgraded to species level within
subgen. Russula. The Californian R. paxilloides is lectotypified and is a good member of subgen. Russula, but is closer to sect. Persicinae
than to the white-spored Vinaceae as previously suggested. Russula maxima, widely accepted as a species of subsect. Subcompactinae
(subgen. Heterophyllidia), certainly does not belong there and has to be moved to subgen. Polychromidia. Finally, R. inconstans is here
maintained as member of subg. Polychromidia.
Related taxa
Russula,,,Russula flava
,,,Russula maxima,,
/Western,
/California, /species concept
D Alert # 9
20150716-10

Search Date
2015/07/16
TRAMETES VERSCOLOR VE PHANEROCHAETE CHRYSOSPORUM BKM-F 1767

LAKKAZLARININ; NDKLEYCYE BALI VERML SALGILANMA KOULLARININ VE
NDGO BOYALAR ZERNDEK ETKLERNN YLETRLMESNDE UYGUN
MEDYATRN ARATIRILMASI
P Bademkran - 2015 - acikerisim.dicle.edu.tr
URL
http://acikerisim.dicle.edu.tr:8080/xmlui/handle/11468/1249
Abstract/Summary
Main source of laccases, which exist widely in nature and have glycoprotein structure and molecular weights range from 50.000 to 130.000,
are fungus. Since they form water as the final product, this enzyme group is called as environment-friendly and it has been taking
increasing interest. This enzyme group, which has a wide application field from textile to paper industry as well as waste refinement
processes and of which substrate specifity is quite wide, catalyses reactions proceeding with the electronic oxidation of the substrate and
converting it into the corresponding reactive radical. So far, more than one hundred laccases were isolated and characterized from nature.
After 1990 when it was realized that ABTS behaved as a laccase substrate mediator or improve the effect of the enzyme, usability of many
other compounds as substrate for this purpose was investigated. Consequently, it was established that the mediator compounds can be
changed depending on source of enzyme that is isolated and/or the substrate. Since development of proper laccase/mediator systems for
such purpose will reduce foreign dependence in the related industries, it contributes cost reduction of the products. In this labour, excreting
more laccases of (melon-watermelon peels and red pine cone) in which it was used various support materials of Phanerochaete
chrysosporium and Trametes versicolor was elicited by stimulating them by solid phase culturing and various inducers. According to this, in
two different concentrations of these inducers; The maximum laccases excreting of 50 M 2,4-xilidine cone is on 26th day, 5000 M 2,5xilidine watermelon is on 26th day, 5000 M 3,5-xilidine is on 12th day, 5 M synthesized is on 26th day culturing. It was dispensed with
the large scale production because it was not observed enough amount of protein and (enough) laccases activity of(in) P. chrysosporium.
Related taxa
Trametes,,,Trametes
versicolor,,,
GC/MS, /laccase, /enzyme
Phanerochaete,,,
Phanerochaete chrysosporium,,,
Fungus,,,,
D Alert # 9
20150716-11

Search Date
2015/07/16
Thermophilic fungi in air samples in surroundings of compost piles of municipal,

agricultural and horticultural origin
F Sebk, C Dobolyi, J Bobvos, S Szoboszlay, B Kriszt - Aerobiologia - Springer
URL
http://link.springer.com/article/10.1007/s10453-015-9396-0
Abstract/Summary
In this study, the effect of the thermophilic fungi of composts was analysed on the fungal composition of the air above. Air samples were
collected with an Andersen air sampler at 1.5 m height in three large industrial composting facilities treating different waste types.
Repetition was collected on three calm and rain-free days of three consecutive weeks in October 2011, in January, April and July 2012; five
plates were exposed successively per sampling day. Compost samples were also collected (averaging 1 kg/compost piles). Air and compost
samples were cultured at 50 C. The thermophilic fungal composition of the air near the compost piles of different waste types differed
significantly (p < 0.05) from that of the control site above a grassland ecosystem at each sampling time. Seasonal differences could be
detected regarding the total number of thermophilic fungi in the air near the agricultural and horticultural compost types, but smaller
differences were found near the municipal compost type. A total of 13 and 11 fungal species were detected in the compost and air samples
where the dominant species were Thermomyces lanuginosus and Rasamsonia emersonii, respectively. The concentration of airborne
thermophilic fungi was higher near the horticultural compost type and lower near the municipal compost. The results suggest that the
differences between the incidences of some species in composts and associated aerosols refer to spore ontogeny and biological mechanisms
of spore liberation.
Related taxa
Thermomyces,,,
Thermomyces lanuginosus,,,
/air sampler, /compost,
Rasamsonia,,,,
/grassland
Rasamsonia emersonii,,
,,
D Alert # 9
20150716-12

Search Date
2015/07/16
Isolation, characterization and antifungal docking studies of wortmannin isolated from

Penicillium radicum
Penicillium radicum
V Singh, V Praveen, D Tripathi, S Haque - Scientific Reports, 2015 - nature.com
URL
http://www.nature.com/srep/2015/150710/srep11948/full/srep11948.html
Abstract/Summary
During the search for a potent antifungal drug, a cell-permeable metabolite was isolated from a soil isolate taxonomically identified as
Penicillium radicum. The strain was found to be a potent antifungal agent. Production conditions of the active compound were optimized and
the active compound was isolated, purified, characterized and identified as a phosphoinositide 3-kinase (PI3K) inhibitor, commonly known
as wortmannin (Wtmn). This is very first time we are reporting the production of Wtmn from P. radicum. In addition to its previously
discovered anticancer properties, the broad spectrum antifungal property of Wtmn was re-confirmed using various fungal strains. Virtual
screening was performed through molecular docking studies against potential antifungal targets, and it was found that Wtmn was predicted
to impede the actions of these targets more efficiently than known antifungal compounds such as voriconazole and nikkomycin i.e. 1)
mevalonate-5-diphosphate decarboxylase (1FI4), responsible for sterol/isoprenoid biosynthesis; 2) exocyst complex component SEC3
(3A58) where Rho- and phosphoinositide-dependent localization is present and 3) Kre2p/Mnt1p a Golgi alpha1,2-mannosyltransferase
(1S4N) involved in the biosynthesis of yeast cell wall glycoproteins). We conclude that Wtmn produced from P. radicum is a promising lead
compound which could be potentially used as an efficient antifungal drug in the near future after appropriate structural modifications to
reduce toxicity and improve stability.
Related taxa
Penicillium,,,,
Penicillium radicum,,,
/screening, /antifungal
drug, /yeast
D Alert # 9
20150716-13

Search Date
2015/07/16
What's inside that seed we brew? A new approach to mining the coffee microbiome.
MJ Vaughan, T Mitchell - Applied and , 2015 - Am Soc Microbiol
URL
http://aem.asm.org/content/early/2015/07/07/AEM.01933-15.abstract
Abstract/Summary
ABSTRACT Coffee is a critically important agricultural commodity for many tropical states and is a beverage enjoyed by billions of people
worldwide. Recent concerns over the sustainability of coffee production have prompted investigations of the coffee microbiome as a tool to
improve crop health and bean quality. This review synthesizes literature informing our knowledge of the coffee microbiome, with an
emphasis on applications of fruit and seed-associated microbes in coffee production and processing. A comprehensive inventory of microbial
species cited in association with coffee fruits and seeds is presented as reference tool for researchers investigating coffee-microbe
associations. It concludes with a discussion of the approaches and techniques that provide a path forward to improve our understanding of
the coffee microbiome and its utility, as a whole and as individual components, to help ensure the future sustainability of coffee production.
Related taxa
D Alert # 9
20150716-15

Search Date
2015/07/16
Yeasts from native Brazilian Cerrado plants: occurrence, diversity and use in the
biocontrol of citrus green mould
EM Sperandio, HMM do Vale, GAM Moreira, CA Rosa - Fungal Biology, 2015 - Elsevier
URL
http://www.sciencedirect.com/science/article/pii/S1878614615001105
Abstract/Summary
Abstract Yeasts are some of the most important postharvest biocontrol agents. Postharvest oranges frequently deteriorate due to green
mould (Penicillium digitatum), which causes significant losses. The aims of this study were to determine the composition and diversity of
yeasts on plants of the Brazilian Cerrado and to explore their potential for inhibiting citrus green mould. Leaves and fruit of Byrsonima
crassifolia and Eugenia dysenterica were collected from Cerrado conservation areas, and thirty-five yeasts were isolated and identified by
sequencing the D1-D2 domain of the rDNA large subunit (26S). The isolates represented the Aureobasidium, Meyerozyma, Candida and
Pichia genera. Three isolates identified as Aureobasidium pullulans exhibited potential for the control of P. digitatum in both in vitro and in
vivo tests; these isolates reduced the incidence of disease and increased the storage time of fruit. A. pullulans has immense potential for the
biological control of filamentous fungi.
Related taxa
Penicillium,,,,
Penicillium digitatum,,,
/sequencing
,Aureobasidium,,
,,Meyerozyma,,
,,Candida,
,,Pichia,
,,,Aureobasidium
pullulans,,,,
D Alert # 9
20150716-17

Search Date
2015/07/16
Lichen Functional Trait Variation Along an East-West Climatic Gradient in Oregon and
Among Habitats in Katmai National Park, Alaska
K Spickerman - 2015 - ir.library.oregonstate.edu
URL
http://ir.library.oregonstate.edu/xmlui/handle/1957/56394
Abstract/Summary
Functional traits of vascular plants have been an important component of ecological studies for a number of years; however, in more recent
times vascular plant ecologists have begun to formalize a set of key traits and universal system of trait measurement. Many recent studies
hypothesize global generality of trait patterns, which would allow for comparison among ecosystems and biomes and provide a foundation
for general rules and theories, the so-called Holy Grail of ecology. However, the majority of these studies focus on functional trait patterns
of vascular plants, with a minority examining the patterns of cryptograms such as lichens. Lichens are an important component of many
ecosystems due to their contributions to biodiversity and their key ecosystem services, such as contributions to mineral and hydrological
cycles and ecosystem food webs. Lichens are also of special interest because of their reliance on atmospheric deposition for nutrients and
water, which makes them particularly sensitive to air pollution. Therefore, they are often used as bioindicators of air pollution, climate
change, and general ecosystem health. This thesis examines the functional trait patterns of lichens in two contrasting regions with
fundamentally different kinds of data. To better understand the patterns of lichen functional traits, we examined reproductive,
morphological, and chemical trait variation along precipitation and temperature gradients in Oregon. Specifically, we measured traits of 102
macrolichen species collected from 166 USDA Forest Service program for Forest Inventory and Analysis (FIA) plots. These plots were
located in a more-or-less continuous swath across Oregon between 43W and 45W. Plots were grouped into seven regions (the Oregon
Coast, Coast Range, Willamette Valley, Western Cascades, High Cascades, Eastern Cascades, and Eastern Oregon). Using multivariate
Related taxa
/Alaska, /Oregon,
/lichen, /climate change,
/temperature, /precipitation

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D Alert # 9

- the latest mycological papers

Daikinrin Daily Document Alert

- the latest mycological papers from Google Scholar

Two New Cuboid-Spored Species of Entoloma sl (Agaricales, Entolomataceae) from

Comment (brief comment in Japanese)

Daikinrin Daily Document Alert

- the latest mycological papers from Google Scholar

Studies in the Bark-Dwelling Species of Hymenochaete (Hymenochaetales,

Comment (brief comment in Japanese)

Daikinrin Daily Document Alert

- the latest mycological papers from Google Scholar

Fungal Biodiversity Profiles 110

Comment (brief comment in Japanese)

Daikinrin Daily Document Alert

- the latest mycological papers from Google Scholar

Comment (brief comment in Japanese)

Daikinrin Daily Document Alert

- the latest mycological papers from Google Scholar

Revision of the genus Bulbothrix (Parmeliaceae, Lichenized Ascomycota) in NE

Comment (brief comment in Japanese)

Daikinrin Daily Document Alert

- the latest mycological papers from Google Scholar

Additions to Brown Spored Coelomycetous Taxa in Massarinae, Pleosporales:

Comment (brief comment in Japanese)

Daikinrin Daily Document Alert

- the latest mycological papers from Google Scholar

Poaceascoma helicoides gen et sp. nov., a New Genus with Scolecospores in

Comment (brief comment in Japanese)

Daikinrin Daily Document Alert

- the latest mycological papers from Google Scholar

The Study of Russula in the Western United States

Comment (brief comment in Japanese)

Daikinrin Daily Document Alert

- the latest mycological papers from Google Scholar

TRAMETES VERSCOLOR VE PHANEROCHAETE CHRYSOSPORUM BKM-F 1767

Comment (brief comment in Japanese)

GC/MS, /laccase, /enzyme

Daikinrin Daily Document Alert

- the latest mycological papers from Google Scholar

Thermophilic fungi in air samples in surroundings of compost piles of municipal,

Comment (brief comment in Japanese)

/air sampler, /compost,

Daikinrin Daily Document Alert

- the latest mycological papers from Google Scholar

Isolation, characterization and antifungal docking studies of wortmannin isolated from

Comment (brief comment in Japanese)

Daikinrin Daily Document Alert

- the latest mycological papers from Google Scholar

Comment (brief comment in Japanese)

Daikinrin Daily Document Alert

- the latest mycological papers from Google Scholar

Comment (brief comment in Japanese)

Daikinrin Daily Document Alert

- the latest mycological papers from Google Scholar

Comment (brief comment in Japanese)

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