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Most prokary0tes are unicellular and small, and are well organized, achieving
all of an organisms life functions within a single cell.
(27.1)
Cell surface structures:
A key feature of nearly all prokaryotic cells is the cell wall, which protects the cell,
encloses it, maintains cell shape, and prevents it from bursting in a hypotonic
environment.
Most bacterial cell walls contain peptidoglycan, polymers consisting of modified
sugars cross-linked by short polypeptides.
Encloses the entire bacterium and anchors all other molecules that extend
from its surface.
Archaeal cell walls do not contain peptidoglycan although they have plenty of
proteins and polysaccharides.
With gram stain, scientists can categorize bacterial species according to their
different cell wall compositions.
It is important in medicine as doctors will be able to determine if a patients
infection is due to a gram-positive or gram-negative bacteria.
Gram-positive bacteria have peptidoglycan and have a simple cell wall structure.
(doesnt wash away purple dye)
Gram-negative bacteria do not have peptidoglycan and have a more complex cell
wall structure. (purple dye washes away and turns pink or red)
Treatment implications:
The lipid portions of the lipopolysaccharide section of many gram-negative bacteria
are toxic, causing fever or shock.
Outer membrane helps protect it from the bodys defense mechanisms.
They are more resistant than gram-positive bacteria due to their outer membrane
impeding entry of drugs/antibiotics.
The capsule is surrounded by a layer of polysaccharides or protein. It also helps
protect it from dehydration and allows the cell to stick to surfaces and other
organisms.
In another way of withstanding harsh conditions, certain bacteria develop thick,
multi-layered coated resistant cells called endospores, when it lacks an essential
nutrient.
B)
Transformation
Takes dna from its surroundings and incorporates it into its own dna.
Transduction
A virus that infects bacteria and carries prokaryotic genes from one cell to
another.
Organisms that obtain energy from the light are called phototrophs.
Those that obtain energy from chemicals are called chemotrophs.
Organisms that need co2 or related compounds as a carbon source are called
autotrophs. (carbon source=co2 or other related compound)
Organisms that require at least one organic nutrient to make other organic
compounds are called heterotrophs. (carbon source=organic compound)
The role of oxygen in metabolism
Obligate aerobes use oxygen for cellular respiration and cannot grow without it.
Obligate anaerobes are poisoned by oxygen.
Facultative anaerobes use oxygen if it is present, but can also do fermentation or
anaerobic respiration depending on the environment.
Nitrogen metabolism
Nitrogen fixation is the conversion of atmospheric nitrogen into nitrogen compounds
that can be used by plants.
Denitrification is going from nitrate nitrite ammonia n2
Nitrosomous ssp convert ammonia into nitrite.
Pseudosomous ssp do denitrification.
Metabolic cooperation
Metabolic cooperation between different prokaryotic species occurs in surfacecoating colonies known as biofilms.
They signal molecules that recruit nearby cells, causing colonies to grow.
They also produce polysaccharides and proteins that stick to the cells of the
substrate and to one another.
Forms the capsule.
(27.4)
Extremophiles live in extreme environments that few other organisms survive there.
Extreme thermophiles thrive in extremely hot environments (hot springs).
At temperatures this high, the cells of the organisms die as their dna are not
in a double helix and many of their proteins denature.
Extreme halophiles live in extremely salty conditions/environments.
Methanogens are methane-generation Archeans.
Poisoned by o2
Use co2 to oxidize h2, a process that produces both energy and waste.
(27.5)
Ecological interactions
Symbiosis is an ecological relationship in which two species live in close contact
with each other.
The larger organism is known as the host, and the smaller one is known as
the symbiont.
Mutualism is an ecological relationship where the two organisms benefit from each
other.
Commensalism is an ecological relationship in which one species benefits while the
other is not harmed or affected in any way.
Parasitism is an ecological relationship in which a parasite eats the cell contents,
tissues, or body fluids of its host.
Parasites that cause damage are called pathogens, many of which are
prokaryotic.
(27.6)
Human well-being can depend on mutualistic prokaryotes.
Different species live in different portions of the intestines, and they vary in their
ability to process different foods.
Many of the species are mutualists, digesting food that our own intestines cannot
break down.
Exotoxins are proteins secreted by certain bacteria & other organisms.
Endotoxins are part of the plasma membrane (g- bacteria)
Released only when the bacteria die and their cell walls break down.
BIL Exam 3 Chapter 28 Notes
(28.1)
Protists, along with plants, animals, and fungi, are classified as eukaryotes.
Belong to the domain: eukarya
Eukaryotic cells have a nucleus and other membrane-enclosed organelles, which
make it more complex than prokaryotic cells.
electron transport chains and hence do not use oxygen to extract energy from carbs
and other organic molecules. Many are parasites. Structurally, they have two equal
sized nuclei and multiple flagella.
Parabasalids: also have reduced mitochondria (hydrogenosomes) and no plasmids.
They generate some energy anaerobically, releasing hydrogen gas as a by-product.
It is parasitic and a common example is the T. vaginalis that infects 5 million per
year and feeds on the vagina lining causing infection.
Euglenozoans: include predatory heterotrophs, photosynthetic autotrophs,
mixotrophs and parasites. Main morphological feature that distinguishes them is the
presence of a rod with either a spiral or a crystalline structure inside each of their
flagella.
- Kinetoplastids: have single, large mitochondrion that contains an
organized mass of DNA called kinetoplast. Feed on prokaryotes in
freshwater, marine and moist terrestrial ecosystems, as well as parasitize
animals, plants and other protists. An example would be the trypanosoma
which infects humans and causes sleeping sickness.
- Euglenids: has a pocket at one end of the cell from which one or two
flagella emerge, some are mixotrophs (perform photosynthesis when
sunlight is available and become heterotrophs when there is no sunlight)
others engulf prey through phagocytosis.
Trypanosomes evade immune responses by switching surface proteins.
The surface is coated with millions of copies of a single protein.
The new generation switches them with millions of copies of different
proteins.
These frequent changes prevent the host from developing immunity.
(28.3)
The sar clade is a monophyletic subgroup named for stramenophiles, alveolates,
and rhizarians.
Stramenopiles: includes some of the most important photosynthetic organisms on
the planet. Their name refers to their characteristic flagellum which is paired to
another shorter (smooth) flagellum.
- Diatoms: unicellular algae that have a unique glass-like wall made of
silicon dioxide embedded in an organic matrix. Walls provide protection
from the crushing jaws of predators. Live diatoms can withstand pressures
of up to 1.4 million kg/m^2. They are highly diverse protists and they are
the most abundant photosynthetic organisms.
Diatoms affect the carbon dioxide levels in the world. When these die,
they sink to the floor and the carbon in their bodies remains there for a
long time rather than being released immediately as carbon dioxide.
Golden Algae: results from their yellow and brown carotenoids. The cells of
golden algae are typically biflagellated. They are components of
freshwater and marine plankton. All golden algae are photosynthetic but
some of them are mixotrophs which absorb organic compounds and food
particles through phagocytosis. Most are unicellular but some are colonial.
If environmental conditions are bad, many species from protective cysts
that can make them last for decades.
Brown Algae: these are the largest and most complex algae. All are
multicellular and most are marine. These have plastids. (seaweeds) brown
algae has specialized organs and tissues that resemble plants. (rootlike
holdfast, stemlike stipe, and leaflike blades). However, morphological and
DNA evidence show that these similarities evolved independently from
one another (analogous).
Haptophytes; unicellular algae that produce plated shells (coccoliths) that
presumably protect them from predators.
(28.4)
Archaeplastida is a monophyletic group that descended from the ancient protist that
engulfed a cyanobacterium. Includes red and green algae.
-
All fungi have essentially the same life cycle though the parts look different.
All are absorptive heterotrophs
Secrete enzymes onto their surrounds to absorb nutrients.
Fungi are heterotrophs, meaning that they cant make their own food.
Absorb nutrients from the environment outside their body
^ Many fungi do this by secreting enzymes into their surroundings.
These enzymes break down complex molecules to smaller organic
compounds that fungi can absorb and use.
Other fungi use the enzymes to break down cell walls to be able to absorb
nutrients from them.
Fungi that are decomposers (saprobic fungi or saprobes) break down and absorb
nutrients from dead organic compounds.
Parasitic fungi absorb nutrients from the cell or cells of the living host (living tissue).
Some parasitic fungi are pathogenic (cause diseases)
In parasitic fungi specialized hyphae, haustoria, create a nutrient pathway
between fungus and host cell (exchange, absorb, give, etc. nutrients).
Chitin the main structural support in the cell walls.
The main storage carbohydrate is glycogen.
Mutualistic fungi absorb nutrients from the cell or cells of the host but they
reciprocate with actions that are beneficial to the host.
The most common fungal body structures are multicellular filaments and single cells
(unicellular) = yeasts (usually in liquid or moist environments)
The morphology of multicellular fungi enhances their ability to grow and absorb
nutrients from their surroundings.
Bodies of these fungi typically form a network of tiny filaments called hyphae.
Coenocytic fungi are organisms that consist of a continuous cytoplasmic mass
having hundreds or thousands of nuclei.
Chytridiomycota
-
Retain primitive characters that may produce clues about fungal origins
Most are aquatic (suggesting aquatic origin)
Some are free-living decomposers, parasites of protists, plants, or animals
Like all fungi, they have chitin in their cell wall
One abberant group has cellulose in the cell walls (unique)
They are the only fungi to retain flagellated gametes (zoospores)
The only fungi to have flagella (primitive)
Basidiomycota
-
Glomeromycota
-
Symbiotic fungi
-
Parasitic
Prey
Predatory
Mutualistic
For some species the process can take place either in the water (primarily the
ocean) or within an egg, or body of the female parent.
All animals have developmental genes, many of which contain dna sequences called
homeoboxes (hox genes)
They regulate gene expression in the embryonic development of most cells.
Wastes:
1) Fish and amphibians do ammonia (highly toxic and need lots of water to
flush) *1 nitrogen*
2) Terrestrial animals (with less access to water) do urea (less toxic and less
water to flush) *2 nitrogen*
3) Reptiles and birds do uric acid (non-toxic and very little water to flush) *4
nitrogen*
An animals set of morphological and developmental traits is often referred to as the
body plan
Sponges (poriferans) have asymmetry.
Organisms that have radial symmetry mean that they have a round or barre-shape
and any slice through its center divides the animal into mirror images.
Organisms that have bilateral symmetry mean that they have a top and bottom
sides, front and back sides, and left and right sides. (ex: bee)
Porifera: the sponges
Choanocytes; collar cells that set up the water current via flagellum
Pinacocytes; form the surface covering (not a true skin)
Porocytes; barrel-shape cells form the incurrent pores
Amoebocytes; roving scavenger cells that participate in feeding and in secreting
skeletal elements called spicules
Spicules can be composed of calcium carbonate, silica, or proteins
Disrupt the cells of a sponge, and it can re-aggregate to form a complete new
sponge.
Three main groups of sponges:
1) Hexactinellida
Deuterostomes
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