MicroPHAZIR User Manual

microPHAZIR User Manual
Thermo Scientific Handheld Near-Infrared Analyzer

Thermo Fisher Scientific
46 Jonspin Drive
Wilmington, MA 01887 USA
Tel.: 978-657-5555
E-mail: support.chemid@thermofisher.com
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Contents
1. Introduction ................................................................................................................. 3
1.1 microPHAZIR Overview ............................................................................................ 4
1.2 Specifications ............................................................................................................ 5
2. Safety ........................................................................................................................... 6
2.1 General Safety Instructions ..................................................................................... 6
2.2 Unsafe operation ....................................................................................................... 7
3. Operation ..................................................................................................................... 8
3.1 Unpacking .................................................................................................................. 8
3.2 microPHAZIRTM Controls ......................................................................................... 9
3.3 Software operation.................................................................................................. 12
3.4 Standby Mode.......................................................................................................... 14
3.5 Downloading data from the microPHAZIRTM ........................................................ 15
4. microPHAZIRTM Configuration Options................................................................... 17
4.1 Application Select ................................................................................................... 18
4.2 PQ (Performance Qualification) ............................................................................. 20
4.3 Take Background .................................................................................................... 20
4.5 Set Group ID ............................................................................................................ 21
4.7 Logout ...................................................................................................................... 25
4.8 Reset Measurement # ............................................................................................. 25
4.9 Version ..................................................................................................................... 26
4.10 Background scans ................................................................................................ 26
4.11 Sample scans ........................................................................................................ 26
4.12 Set date & time ...................................................................................................... 26
4.13 Get Diagnostics Files............................................................................................ 27
4.14 Delete All Data Files .............................................................................................. 28
4.15 Delete App. Data File ............................................................................................ 28
4.16 Turn Speaker ON or OFF ...................................................................................... 28
4.17 Voltages ................................................................................................................. 28
4.18 Set/Unset Euro CSV .............................................................................................. 28
5. Maintenance .............................................................................................................. 29
5.1 The microPHAZIRTM Battery Charger .................................................................... 29
5.2 microPHAZIRTM Batteries and Battery Charging .................................................. 30
5.3 Changing the Bulb .................................................................................................. 31
5.4 Cleaning the Instrument ......................................................................................... 34
6. Fault Diagnosis and Troubleshooting..................................................................... 34
7. Spare Parts and Service ........................................................................................... 35
8. Warranty..................................................................................................................... 36
Appendix A: Usage Guide ............................................................................................ 38
A1 First time operation ................................................................................................ 38
A2 Notes on measurement .......................................................................................... 38
A3 microPHAZIRTM Quick Start .................................................................................. 38
A3.1 Hardware Overview ........................................................................................ 39
A3.2 Collect Mode................................................................................................... 39
A3.3 Downloading Data .......................................................................................... 40
A3.4 Other Applications .......................................................................................... 40
Appendix B: Vial and Cuvette Adaptor Usage ........................................................... 41
Appendix C: Barcode Reader Option .......................................................................... 45
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1. Introduction
The microPHAZIRTM is an integrated handheld spectral analyzer that includes a near
infrared spectrometer, light source, probe, computer, color LCD display and batteries. It
is designed to analyze diffuse reflection measurements from solids, powders or other
reflective materials in a wide range of applications. An accessory for transmission
measurements of materials such as liquids is available as well.
The instrument uses a scripting language to define applications that can be operated by
users with minimal training and little or no spectroscopy experience. Separate scripts
are written for each application, enabling a single device to function successfully for
many applications in many fields.
This manual provides detailed operating instructions and information on the operation
and care of the microPHAZIRTM.
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1.1 microPHAZIR Overview

The microPHAZIRTM was developed using Thermo Scientifics unique MEMS (MicroElectro-Mechanical System) technology that enables the construction of spectrometers
that have no moving parts, are small, and use little power. These characteristics are
ideal for the fabrication of hand-held instruments.
An overview of microPHAZIRTM is shown in below.
Control buttons
LCD Display
Rear LCD screen
Sampling area
Reflectance probe
Sample Scan Trigger
Lanyard
Battery access door
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1.2 Specifications
microPHAZIRTM Handheld NIR Analyzer
Spectral Range
1600-2400nm (6,250 4170 cm-1
Pixel Spacing
8nm
Optical Resolution
11nm
Stray Light
<0.01%
Measurement Interface
Diffuse reflectance
(Optional, Liquid Vial Adapter)
Contact Thermo Scientific for application specific probes
Weight
2.75 lbs. (1.25 kg.)
Hardware Interface
Mini-USB communication port for Windows XP or Vista data

download
A/D Converter
24 bit
Detector
Single InGaAs
Display
Color LCD transflective 3.5 diagonal dimension; Black & white rear
LCD display
Controls
Scan trigger, 4 navigational buttons, 2 soft buttons, main power

button
Battery operational life
At least 6 hrs. full operation with new charged battery.

Built in features for extended non-operational power saving
Batteries
Rechargeable / swappable Lithium-Ion
Battery charger
110/220 AC to 8.4V DC
Recharge time
3.5 hrs. from depleted to charged
Reference method
Automatic calibration using internal reference
Light source
Replaceable harmless Tungsten bulb
Water Resistant:
Designed for IP 54 (International Protection Rating).
Operating Temp Range
5 to 40C.
Storage Temp Range
-20 to +70C
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2. Safety
STOP
Read this section carefully before connecting and

operating the instrument and the accessories!!!
2.1 General Safety Instructions

As with all technical instruments, the best possible operating safety can only be
guaranteed if general safety precautions as well as special safety instructions in this
manual are followed.
The instrument and its accessories comply with the relevant safety regulations. Repairs
must be performed by authorized personnel only. Improper repairs could result in
considerable damage to the instrument and possible danger to the user.
The microPHAZIRTM and its accessories are designed to be operated in conditions that
are safe and comfortable for the operator in a typical manufacturing, material testing,
and QC environments (I.P. 54 conditions). As with any electrically powered device,
there are conditions that may cause harm to a) the instrument or b) to the user by
exceeding the instruments design limits.
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2.2 Unsafe operation

If the instrument is damaged or not functioning properly, it should be switched off and
not used until it has been properly repaired or replaced. Operation of an improperly
functioning or damaged instrument can result in incorrect readings and even danger to
the operator.
Conditions that may harm the instrument:
Steam
High Humidity (moisture condensing conditions)
Extreme ambient temperatures below 5C (40F) or above 45C (110F)
Strong electromagnetic (motors or transformers) or electrostatic fields
Strong vibrations and impacts
Contact with oxidative, corrosive and caustic atmospheres such as, but not
limited to chlorine gas, hydrochloric acid, ammonia.
Contact with oxidative, corrosive and caustic liquids, such as, but not limited to
concentrated hydrogen peroxide, sulfuric acid, aqueous sodium hydroxide.
Conditions that exceed the instruments design:
Immersion in water and electrically-conductive liquids

Combustible atmospheres due to flammable gases
Burying in dirt
Long-term exposure to solvent vapors, including methylene chloride
Flammable liquids, e.g. kerosene, gasoline, diesel, oil, alcohols, ketones
Failing to follow these instructions may result in harm to the instrument or user. If the
instrument is damaged due to exposure to any of these conditions, even occasional,
your warranty will be voided. Please contact Thermo Scientific if you require
modifications to permit the instrument to work in these harsh conditions.
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3. Operation
3.1 Unpacking
The microPHAZIRTM is shipped in a padded case that can be used for storage and
transport of the instrument.
We strongly recommend using the supplied container for transportation

and storage and return if necessary to properly protect your instrument.
Included with the microPHAZIRTM are the following items:
1 microPHAZIRTM
1 USB cable
1 spare microPHAZIR rechargeable battery**
1 battery charger
1 0.050 Allen key
1 Phillips screwdriver
1 CD or printed operating manual
1 spare bulb
1 internal reference standard
**Please note: A battery comes installed in the microPHAZIR in addition to the spare
battery. Please refer to Section 5: Maintenance for replacement and charging.
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3.2 microPHAZIRTM Controls

Back View
The following items can be found on the back-side of the microPHAZIRTM.
The rear LCD display indicates the operation state of microPHAZIRTM and results.
Under the USB cover is the USB port used to connect microPHAZIRTM to a WindowsTM
based computer. When connected and recognized by the computer, the words
microPHAZIR will appear on the computer as a removable storage device similar to
current digital cameras or USB memory keys:
The USB connection can be used to download scan-data from the microPHAZIRTM and
upload new or upgraded applications to the microPHAZIRTM. There are two additional
ports. The one on the right is a programming port for factory use only. The one on the
left is for future use and will enable operation of the microPHAZIR from an external
power source.
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TOP VIEW
The following items can be found on the top-side of the microPHAZIRTM.
Time
Battery indicator
Scan Number
% full scale signal
Color Display
Soft Keys
Navigation Keys
Power Switch
The Color Display is the main method of communicating analysis data to the user. The
microPHAZIRTM uses a transflective display technology for easy visibility indoors and
outdoors, accommodating a variety of work environments. At the top of the display the
current time, battery state of charge, scan number, and signal level as % full scale
indicators can be found. Other features displayed on the screen will vary depending on
the application used.
The battery indicator is green for an indication of the charge level. The indicator turns
into flashing red when the battery is nearing complete discharge (15 minutes of
operation left).
Navigation Keys: These buttons can be used to navigate up, down, left and right
between the various menu items.
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Soft Keys: The function of these buttons is displayed on the screen directly above them.
In the picture above the right soft key is labeled Config. The functions of the soft keys
can change for different screens and applications.
Power Switch: To turn the microPHAZIRTM on, press and release this button. To turn
the microPHAZIRTM off hold the button down until the screen indicates the
microPHAZIRTM is powering down. A short wait period is required while the onboard
computer initializes or shuts down properly.
In addition to the above controls there is a trigger (see microPHAZIR overview) that
initiates the measurement of a spectrum. An optional barcode reader is also available.
3.3 Software operation

The microPHAZIRTM is a flexible analysis platform that can run several different
applications. The active application is the application that is loaded into the
microPHAZIRTM memory. In this section the application Collect data is described. This
application is preloaded into this unit along with any other applications the customer may
order. Usage of other applications will be very similar but may vary in screen layout or
order of presented options.
3.3.1 microPHAZIRTM Startup and User Log On
The microPHAZIRTM is turned on by pressing the power button on the top.
The first two screens displayed will indicate the unit is starting up and then loading
software.
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This process should take approximately 30 seconds. The next screen will indicate the
light source is turned on and performing an initial calibration. The microPHAZIRTM uses a
harmless tungsten light source requiring no precautions when operating it.
If the User Login function is enabled, the user selection screen, shown above, will be
displayed. Factory default is for the User Login feature to be disabled, but it will be
enabled upon customer request.
Each microPHAZIRTM is configured with two user accounts named Admin and Guest.
These user accounts are configured with no password required as the default. User
accounts including passwords can be configured by the system administrator using the
PHAZIR Setup Utility software.
The Admin user has full access rights to all Configuration menu functions on the
microPHAZIRTM. In Section 4, all menu items are described.
To select the user, use the navigation keys to highlight the user and press the Accept
soft-key.
Once the initial calibration is complete the microPHAZIRTM is ready for operation. It is
wise to perform a PQ (Performance Qualification) test periodically or after any event,
such as dropping the instrument, which might cause misalignment. The PQ test will
verify the instrument is operating properly. This test is described in section 4.2.
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3.3.2 Sample Measurement

The microPHAZIRTM is capable of running many different analysis programs called
Applications. Applications are defined using a Script, which is a set of instructions and
mathematical equations that define how the microPHAZIRTM will perform the
measurement, analyze data, record data and display results.
When the microPHAZIRTM is turned off, the Script in use will be automatically loaded the
next time the microPHAZIRTM is turned on.
NOTE: the trigger need only be depressed until a click is felt and then it should be
released. The microPHAZIRTM will perform the scan until the measurement is
complete.
During the measurement the following screen is displayed:
During the measurement, the user should keep the sample in contact with the
microPHAZIRTM and should not move it. The Scan progress is indicated on the main
LCD screen by a progress bar during the measurement. In addition, the rear LCD
screen says scanning and measurement complete at the end of the scan. The
number of scans may vary depending on the application in use. The rear LCD screen
will also indicate when the measurement is complete and contact with the sample is no
longer required. The result is displayed on both LCD screens.
Note: Each time a sample is measured on the microPHAZIRTM, the Scan Number
indicator located at the very top of the screen is incremented. This number is recorded
in all data files to identify the particular measurement and can be used to match data
with sample information. The number displayed AFTER the scan is complete is the
value that is recorded with the scan that was just completed.
3.4 Standby Mode

After long periods of inactivity, the microPHAZIRTM will automatically switch into Standby
Mode to conserve battery power. In Standby Mode the light source is turned off but the
processor is kept running. The length of inactivity before Standby Mode is activated is
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set for each application in the script. During Standby Mode the following screen is
displayed:
To resume operation from Standby Mode, press any button. The light warm up screen
will be displayed, followed by a new background scan.
3.5 Downloading data from the microPHAZIRTM

With both a computer and the microPHAZIRTM turned on and operating properly,
connect the microPHAZIRTM to the computer using the USB cable provided. The screen
of the microPHAZIRTM will first say preparing data and then USB cable attached. On
your computer, a removable storage device called microPHAZIR should then appear
as an additional drive. When opening the drive, you will find the following folders:
Application scripts reside in the Applications Folder which can be accessed to add new
applications or upgrade current applications (e.g. adding additional materials to be
identified etc).
The Config and firmware folders contain information used by the microPHAZIRTM and
normally should not be accessed by users. The Config folder also contains the group ID
and Sample Info files.
Logged scan data files can be found in the top level of the drive. In the example above,
the file Collected-data-1003.csv is a data file containing measured spectra. 1003 is the
instrument serial number. Data files are saved in an ASCII comma separated value
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format (csv). The csv extension is added to the file name so that it can be opened with
Excel by simply clicking on it.
To review a data file, it is best to copy it from the microPHAZIRTM to the PC using
standard Windows methods (copy and paste, or drag and drop) and open the file with
Excel by double clicking on it. Below is a typical view from Excel:
The column headings in this file have been designed to be self-explanatory. Each
spectrum occupies a row of the spreadsheet. Starting with column F, the wavelengths
are displayed in the top row with the Log (1/R) data below. The data saved in this format
is compatible with most chemometric software packages with minimal editing.
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While this format is typical, other formats are possible. The data
file format is determined by the Application. Some Applications
save only the identification results, for example Cotton from the
fabric identification script might only be saved in the file and not
the spectral information. Other Applications may save no data at
all.
After transferring data to the PC, click on the Safely Remove Hardware icon in the task
bar. Safely Remove the microPHAZIR from the USB connection list before unplugging
the USB cable.
Failure to use the Windows safe removal function may result in

corrupt or missing data on the microPHAZIRTM.
4. microPHAZIRTM Configuration Options

This section will describe the complete set of available configuration options. By
pressing the Config soft key the configuration menu will appear on the screen. The
available menu items are dependent on the selected user account permissions and the
microPHAZIR application that has been selected.
The three screens below show all of the Configuration menu items that are accessible
from the Collect application. Other applications will usually have a smaller number of
menu items available.
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To select a configuration option, navigate to the option using the directional navigation
keys and then press the Select Item soft-key.
4.1 Application Select

This option presents a list of available applications (also referred to as scripts):
Note: depending on the permission level of the logged-in user, application
selection may not be available.
Of the 4 applications listed here, Collect is the only standard application included on all
microPHAZIRTM units. The additional applications are commercially available from
Thermo Scientific.
Note that after selecting a new application from this menu, a new background
measurement will be performed automatically.
4.1.1 Collect
The data Collect application is for recording raw spectra without data pretreatment or
predictions. The spectral data can be later downloaded to a PC. This application is
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typically used for collecting raw data that will subsequently be used for chemometric
modeling and application development. At this point, hold the microPHAZIRTM against
the sample, press the trigger, and record the new spectra. The screen will appear as
shown below. Pressing the more button will show an expanded view of the spectrum.
Record the scan number for the resulting spectra. Once spectra of all samples are
collected, the data can be downloaded from the microPHAZIRTM into your PC. See
section 3.5 for further instructions.
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4.2 PQ (Performance Qualification)

PQ is a function which tests the microPHAZIRs optical performance for wavelength
accuracy, photometric linearity, and photometric noise. The test results are compared
against established acceptance criteria, with a result of either Pass or Fail for each test.
This test should be performed on a regular basis, such as every day of use or every
week, and if some event occurs (such as dropping the instrument) that might affect its
performance. After selection of this function in the config menu, the series of
measurements are made automatically. When the tests are complete the system will
automatically evaluate and display the results. Each test result is displayed with a PASS
or FAIL result. Press the More soft-key to view the actual, measured values and
acceptance criteria for each test. By pressing the Done soft-key, the screen returns to
the config menu. By then pressing the exit soft-key you are returned to the application
you were using before doing the PQ test.
4.3 Take Background

This option allows the user to refresh the Background measurement. This step can be
performed from time to time to account for long term variations in the light-source output
and environmental conditions. Selecting this option automatically performs the same
background measurement as when the microPHAZIRTM was turned on. Afterwards you
are returned to the application you were using.
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4.4 Cal Internal Reference

This function in the config menu is only available when the Collect application is loaded
into memory. When asked to do so, place the internal reference standard on the
microPHAZIRTM as shown in the screens below. After pressing the OK soft-key, the
process proceeds automatically. At the end of the process, you will be returned to the
collect application. This function is to correct for any slight alignment changes that may
occur when the plastic nose is removed and should be run if the light bulb is changed.
4.5 Set Group ID

The Group ID is a text field that is added to the data file created by the Collect
application. It is also available for other applications if it is listed in the config menu for
that application. This is useful during subsequent data analysis for identification of the
scan and for classification model development. The microPHAZIRTM is shipped with only
two default group IDs in the list; Group 1 and Group 2. However, the user may easily
change the list of available groups by plugging in the USB interface and opening the file
named GroupIDs.csv in the microPHAZIR/Config folder. This file may be opened with
Excel and the new groups may be entered in the first column. Example 1 below shows
the list as it appears on a new microPHAZIR. Example 2 shows the list after it was
edited for collecting sugar data.
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Example 1:
Example 2:
The file should be re-saved under the same name and it must be saved as a csv file
type. (Normally this file type will be saved automatically by Excel since it was the
original file type).
Group IDs are selected by using the up/down arrow keys to highlight the desired text
field. The Accept button is used to select that value. The Group ID will appear in the
Collect application on the main screen so the user can easily see the current value. As
previously mentioned, the Group ID is also saved in the data file with each spectrum. By
selecting skip the user is returned to the config menu.
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New Group IDs may also be entered manually (character-by-character) directly on the
microPHAZIR by selecting new. The first character can be selected using the up/down
arrow. Additional characters can be selected by using the right arrow key. Once editing
is complete, press the Accept soft button.
See the PHAZIR Tools User manual for more detailed information regarding Group IDs.
4.6 Set Sample Info

Sample Info provides the ability for the user to store additional information about the
sample such as the supplier, lot number, container number etc. Up to 5 Sample
information fields may be included for each measurement.
The Sample information fields are defined within the microPHAZIR Application by the
Thermo Scientific Method Generation Software. The sample information lists can be
edited manually (character-by-character) or by constructing lists by editing the .csv files
located in the microPHAZIR/Config directory. Thermo Scientific can install custom
Sample Info files upon request.
Inputting Sample Information is very much the same as entering Group ID except that up
to 5 information fields may be supplied. If multiple Sample Information fields are
configured, each Sample Information field is sequentially presented to the operator.
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The default Sample Information categories are listed below but these can be customized
as required.
Sample Information entries are automatically stored in the microPHAZIR data files along
with the spectrum, predicted results, time/date, operator etc.
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4.7 Logout
The Logout menu option logs the current user out and prompts a new user to login to the
microPHAZIRTM.
4.8 Reset Measurement #

This function resets the scan number to zero. The measurement scan number
automatically increments by 1 after each measurement. Selecting Reset Measurement
# resets the starting value to 0. A scan must be performed before shutdown to retain the
reset measurement number.
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4.9 Version
This function displays the current version of Firmware running on the microPHAZIRTM,
the serial number of the microPHAZIRTM and the FPGA version number.
Note: The microPHAZIR serial number can also be found in the battery
compartment.
4.10 Background scans

Allows authorized users to change the number of background scans to be averaged for
a specific application. This setting temporarily overrides the default application setting,
but is not remembered (changes are lost when the application is reloaded).
4.11 Sample scans

Allows authorized users to change the sample scan counts to be averaged for a specific
application. This setting temporarily overrides the default application setting, but is not
remembered (changes are lost when the application is reloaded).
4.12 Set date & time

Allows authorized users to set/change the date and time that is displayed on the screen
and saved as a time-stamp with scan data. Use the left-right navigational buttons to
make the changes and press accept soft-key to store the resulting date and time.
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4.13 Get Diagnostics Files

By selecting this item from the config menu, it will be possible to download copies of
certain system files the next time the USB cable is attached. This is useful for troubleshooting problems with the microPHAZIRTM.
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4.14 Delete All Data Files

Selecting this item deletes the data files for all the applications on the microPHAZIRTM.
4.15 Delete App. Data File

This function just deletes the data file for the application that is currently active.
4.16 Turn Speaker ON or OFF

This function turns ON and OFF the beep that occurs with each button press and at the
completion of a scan.
4.17 Voltages
This function displays the percentage of maximum voltage that is being supplied to the
lamp (light source). This value is determined by the application in use and may be a
fixed value or it may be automatically set by the application during calibration. In
addition this function provides a measure of the battery voltage.
4.18 Set/Unset Euro CSV

This function changes the delimiting character in the ASCII version of microPHAZIR
process data files in order accommodate data import requirements of different
languages. The standard setting is a comma , delimiter. If this option is set, the value
delimiter is changed from a comma to a semi-colon ; and decimal points within numeric
values are changed to commas.
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5. Maintenance
5.1 The microPHAZIRTM Battery Charger
The battery charger was developed specifically for this battery system and provides the
means for a fast and safe charging of the battery pack in the microPHAZIRTM instrument.
It is easy to use and enables the maximum use of the battery pack capacity, while at the
same time providing the highest possible protection.
STOP
Using a Charger other than the one provided with your

instrument may result in damage to the instrument.
To charge the battery, please proceed as follows:

1. Do not remove battery while the unit is turned on. This could result in loss of data
or instrument malfunction.
2. Turn the unit off and remove the battery from the microPHAZIRTM.
3. Plug the battery into the charger.
4. The charging process can be monitored, by looking at the colored LED indicator
on the charger.
Green flashing battery is charging.
Green solid battery is fully charged.
Red error.
5. Estimated charging time for a full charge is 3.5 hours.
6. Charge state of any battery can be determined by pressing the button on the
battery and reading the percent of charge on the LED indicator on the battery.
7. When microPHAZIRTM is turned on, the charge level of the batteries is indicated
at the top of the main LCD display. When the charge is sufficient, the indicator is
green. When the charge level is too low, the charge indicator flashes red. This
means the microPHAZIRTM battery should be changed immediately. Failure to
do so could result in loss of data.
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STOP
Use only battery packs certified by Thermo Scientific.

(cf. Spare Parts)
Never short circuit the contact surfaces of the battery
Never expose the battery to open flames.
5.2 microPHAZIRTM Batteries and Battery Charging

To change the battery pack, first turn the microPHAZIRTM off. Remove the battery pack
by opening the latch on the bottom of the handle and pulling the battery tab as shown
below. Replace with a new one by sliding the battery pack into the handle and pushing
firmly into place. The battery will only fit in one orientation. Close the latch on the
bottom of the handle. Turn the power back on.
To charge the battery, follow the instructions below.
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5.3 Changing the Bulb

Like any light bulb, the light source in microPHAZIRTM will need to be replaced from time
to time. A spare bulb kit is included with the microPHAZIRTM when it is purchased.
Additional bulbs can be obtained from Thermo Scientific.
Step 1: With the microPHAZIRTM turned
off, remove the two screws holding
the nose cover to the instrument.
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Step 2: Remove the nose cover.
Step 3: Locate the setscrew securing the light

bulb in place. Loosen this setscrew with the
Allen key provided and extract the bulb. The
connecting wires should come out with the
bulb to reveal a connector.
Step 4: Disconnect the connector by

squeezing the release tab and remove the
bulb being careful not to touch or damage the
other components in the nose.
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Final Steps:
Step 5: Insert a new bulb into the socket as far as it will go. Orient the mark on the
light bulb with the arrow on the mount (as shown below) and secure it by tightening
the set screw.
Step 6: Attach the wire connector on the bulb to the plug connector on the
microPHAZIRTM.
Step 7: Attach the nose cover using the two screws.
Step 8: Power on the microPHAZIRTM to verify that the new bulb is working properly. It
is necessary to run the Cal Internal Reference function under the config menu before
anything else. Then run a PQ test and one of the applications on the microPHAZIRTM to
ensure that everything is functioning properly.
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5.4 Cleaning the Instrument

For optimal performance it is necessary to keep the measurement sampling window
clean and dry. Please use a clean, soft cloth and gently wash with water or alcohol and
then dry. (Do not use other solvents like acetone!) The outside of the microPHAZIRTM
including the display can be cleaned with a cloth dampened with water.
STOP
The standard issue microPHAZIRTM is not designed for

immersion in water.
6. Fault Diagnosis and Troubleshooting

1. The light source does not light up with the microPHAZIRTM turned on.
Verify that the main LCD screen is lit to ensure that batteries are charged.
Verify that the microPHAZIRTM is not in standby mode by looking at the screen for a
standby mode message. If it is, press any button on the unit and wait for the light source
to warm up.
If the batteries are charged and microPHAZIRTM is not in standby mode, replace the bulb
following instructions in the maintenance section. If the bulb still does not light up when
the power is turned on please contact a service center for further evaluation.
2. My application is not predicting properly
Run the PQ (performance qualification) test in the config menu to verify that the
instrument meets the performance specifications and is still calibrated. Check to be sure
that the sampling area is clean. If the problem persists, please contact a service center
for further evaluation.
3. Other problems
Please contact Thermo Scientific for assistance.
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7. Spare Parts and Service

microPHAZIRTM is designed for use in an industrial environment. Should you experience
any problems, the following parts can be obtained from Thermo Scientific:
microPHAZIRTM 7.2V Li-ion smart charger (DC Output 8.4V 1.0A)

Spare Li-Ion battery
Replacement tungsten bulb
Wrist lanyard
Hip holster
Documentation CD
Table-top stand
Carrying case
USB cable
Liquid vial adapter
Glass vial adapter for reflectance
If you require a part that is not listed above, please contact:

Thermo Fisher Scientific
46 Jonspin Drive
Wilmington, MA 01887 USA
Tel.: 978-657-5555
E-mail: support.chemid@thermofisher.com
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8. Warranty
Thermo Scientific, Inc. (Thermo Scientific or Seller) warrants that its products will be free
from defects in materials and workmanship under normal use and service in general
process conditions for the effective period set out below. This warranty and its remedies
are in lieu of all other warranties expressed or implied, oral or written, either in fact or by
operation of law, statutory or otherwise, including warranties of merchantability and fitness
for a particular purpose, which Thermo Scientific specifically disclaims. Thermo Scientific
shall have no liability for incidental or consequential damages of any kind arising out of the
sale, installation, or use of its products.
Thermo Scientifics obligation under this warranty shall not arise until Buyer notifies
Thermo Scientific of the defect. Thermo Scientifics sole responsibility under this warranty
is, at its option, to replace or repair any defective component part of the product within the
warranty period.
Except in the case of an authorized distributor or seller, authorized in writing by Seller to
extend this warranty to the distributors customers, the warranty herein applies only to
Buyer as the original purchaser from Seller and may not be assigned, sold, or otherwise
transferred to a third party.
No warranty is made with respect to used, reconstructed, refurbished, or previously owned
Products, which will be so marked on the sales order and will be sold As Is.
BUYERS SOLE AND EXCLUSIVE REMEDY UNDER THIS WARRANTY IS THAT THE
SELLER EITHER AGREES TO REPAIR OR REPLACE, AT SELLERS SOLE OPTION,
ANY PART OR PARTS OF SUCH PRODUCTS THAT UNDER PROPER AND NORMAL
CONDITIONS OF USE, PROVE(S) TO BE DEFECTIVE WITHIN THE APPLICABLE
WARRANTY PERIOD. ALTERNATELY, SELLER MAY AT ANY TIME, IN ITS SOLE
DISCRETION, ELECT TO DISCHARGE ITS WARRANTY OBLIGATION HEREUNDER
BY ACCEPTING THE RETURN OF ANY DEFECTIVE PRODUCT PURSUANT TO THE
TERMS SET FORTH HEREIN AND REFUNDING THE PURCHASE PRICE PAID BY
BUYER.
Place of Service
Seller shall use its best efforts to assist buyer to resolve all warranty related issues
through Thermo Scientific customer and technical support as soon as reasonably
practicable after notification by the Buyer of a possible defect. However, the Seller
reserves the right to require the Buyer return the Product to Sellers production facility,
transportation charges prepaid, when necessary, to provide proper warranty service.
Effective Date
The effective date of this warranty shall begin on the date of shipment/date of invoice,
whichever is later. Products are warranted to be free from defects in materials and
workmanship for parts and labor for 1 year with the exceptions indicated below:
Limitations
Products are warranted to be free from defects in materials and workmanship for parts
and labor for 1 year with the following exceptions:
Any components of the system that are in direct contact with corrosive materials
are warranted to be free from defects in materials and workmanship at time of
delivery but cannot be further warranted due to the unknown nature of the use of
the product.
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Consumable items such as lamps, cuvettes and optical filters are excluded from
this warranty. If a lamp undergoes a catastrophic failure (e.g., no light at all) within
90 days of shipment from the factory, it will be replaced at no charge.
Loss, damage, or defects resulting from transportation to the Buyers facility,

improper or inadequate maintenance by Buyer, software or interfaces supplied by
the buyer, unauthorized modification or operation outside the environmental
specifications for the instrument, use by unauthorized or untrained personnel or
improper site maintenance or preparation.
The sole and exclusive warranty applicable to software and firmware products
provided by Seller for use with a processor internal or external to the Product will
be as follows: Seller warrants that such software and firmware will conform to
Sellers program manuals or other publicly available documentation made
available by Seller current at the time of shipment to Buyer when properly installed
on that processor, provided however that Seller does not warrant the operation of
the processor or software or firmware will be uninterrupted or error-free.
Products that have been altered or repaired by individuals other than

Thermo Scientific personnel or its duly authorized representatives,
unless the alteration or repair has been performed by an authorized
factory trained service technician in accordance with written procedures
supplied by Thermo Scientific.
Products that have been subject to misuse, neglect, accident, or

improper installation.
The warranty herein applies only to Products within the country of original
delivery. Products transferred outside the country of original delivery, either
by the Seller at the direction of the Buyer or by Buyers actions subsequent to
delivery, may be subject to additional charges prior to warranty repair or
replacement of such Products based on the actual location of such Products
and Sellers warranty and/or service surcharges for such location(s).
The warranty period for data processing equipment, including data storage
devices, processors, printers, terminals, communication interfaces, tape
drives, and/or all similar devices, is in all cases limited to ninety (90) days
from the date of shipment to Buyer.
Repaired products are warranted for 90 days with the above exceptions.
110-00026-02 RevB
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Appendix A: Usage Guide

A1 First time operation
When the microPHAZIRTM is first turned on, verify that the battery is charged.
If the batter is not charged, please refer to Section 5 (Maintenance) for a description of
the batteries and the charging procedure. The instrument always has the collect
application pre-installed in memory and may have other applications installed as well.
A2 Notes on measurement
The microPHAZIRTM makes diffuse reflection measurements of materials that are placed
in contact with the nose of the instrument. These are usually solids or powders. The
material must be reflective enough so that the light level reaching the instrument is
above a threshold set by the application.
General Notes
The sample to be measured must be in contact with the nose of the
microPHAZIRTM to make a measurement and it must not be moved during the
measurement time.
Light must reach the material of interest to be properly measured. The
microPHAZIRTM cannot measure through thick paint, paper, or metals.
Transparent materials do not reflect much light and will be difficult to measure.
Sheets of thin transparent material can be measured by using a diffuse reflection,
reference material such as Spectralon or Flourilon behind the film.
Some dark materials, notably those filled with or covered with carbon-black, do
not reflect sufficient light for measurement.
Small pieces of material can be analyzed by carefully placing the sample on a
well lit portion of the window.
To perform a measurement
Verify that the application you wish to use, such as Data collection, is loaded.
Press the nose of the instrument against the sample to be measured and pull the trigger.
Do not hold the trigger down as this will delay the measurement. The parameters for the
measurement, such as the number of spectra/scans to average, are set by the
application loaded in the microPHAZIR.
A3 microPHAZIRTM Quick Start

The microPHAZIRTM is a self-contained analyzer. It contains a power supply, a light
source, sampling interface, spectrometer and embedded computer. When the
appropriate application is loaded, it makes measurements of the material of interest and
provides an analysis of the resulting spectrum. Operation is demonstrated with the
Collect Data application.
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A3.1 Hardware Overview
Time
Battery indicator
Scan Number
% full scale signal
Color Display
Soft Keys
Navigation Keys
Power Switch
A3.2 Collect Mode

The collect mode is used in the acquisition of library spectra. It is useful to have a
notebook and writing instrument to provide a record of which spectra belong to which of
the materials being measured. In general, five readings should be taken from various
points on each material. Record in the notebook a detailed description of the sample
that allows accurate identification rather than a vague description or serial number.
1. Turn the microPHAZIRTM on by momentarily pressing the power button on the top
of the instrument.
2. The microPHAZIRTM will load the most recently used application.
3. If it is not Collect, press the soft-key marked Config.
4. Using Application Select load the Collect application.
5. Place the sampling aperture in solid contact with the material and do not move it
during the measurement.
6. Pull but do not hold the trigger to begin the measurement. Completion of the
measurement will be indicated on both LCD screens.
7. Record in the notebook the measurement number, located on the upper part of
the display, along with a description of the material being measured.
8. When all measurements are finished, hold down the power button on the top of
the instrument until the main LCD screen indicates the microPHAZIRTM is
shutting itself down.
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A3.3 Downloading Data

1. If the microPHAZIRTM is not turned on, turn it on by momentarily pressing the
power button on the top.
2. Using the supplied USB cable, connect the Windows computer to the
microPHAZIRTM. The USB connection on the microPHAZIRTM is under the USB
cover below the rear LCD screen.
3. On the computer, navigate to the new drive labeled microPHAZIR.
4. Copy the .csv file that begins with <application>Data to the computer.
5. Eject the microPHAZIRTM by clicking on the Safely remove hardware icon in the
taskbar.
6. Unplug the microPHAZIRTM.
A3.4 Other Applications

Thermo Scientific has available standard applications that can be installed by the user
onto the instrument. In addition, new scripts can be written for special applications.
Thermo Scientific provides development and maintenance services for new applications
for the microPHAZIRTM. Some users may wish to develop their own application using
the Thermo Scientific Method Generator (PMG) program that runs on a Windows
platform and automates the process of creating an application file. Please contact
Thermo Scientific for more details.
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Appendix B: Vial and Cuvette Adaptor Usage
(microPHAZIR with cuvette adaptor attached)
B1.
B2.
B3.
B4.
Introduction
Attaching and de-attaching adaptors
Use of the Collect Cuvette application (cuvette and liquid adaptors
only)
Making applications using Thermo Scientific MG for use with Cuvette
and Liquid Vial Adaptors
B1. Introduction:
The microPHAZIR has several available sample adaptors. The adaptors include:
-Cuvette adaptor for transmission measurements on liquid samples.
-Liquid vial adaptor for transmission measurement on small vials.
-Solids vial adaptor for measuring diffuse reflectance from powder
(typically) samples.
-Quick-disk adaptor for locating quick-disk vials and measurement of
diffuse reflectance from samples.
All of the adaptors use the same attachment method which is described in section B2.
Note that for transmission measurements (cuvette and liquid vial adaptors) the
microPHAZIR internal reference should NOT be used since that is only for diffuse
reflectance measurements. Instead, reference measurements for transmission
measurements are made on either empty adaptors or adaptors with empty cells (cuvette
or vial). In order to prevent the microPHAZIR from automatically using the internal
reference, a special Collect-Cuvette application should be used for collecting data
(section B3). When creating applications in Thermo Scientific Method Generator
software, an option is available to disable the reference shutter and is described in
section B4.
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B2. Attaching and De-attaching adaptors:

They may be attached by simply pressing them onto the nose of the instrument until the
two side clips lock into the slots. Sometimes this may involve a light rocking motion:
Figure B1. Slide on adaptor until locking clips snap into place (indicated by the
blue arrows).
The adaptor is removed by squeezing the two metal release springs simultaneously as
shown in figure B2:
Figure B2. Squeeze the metal release springs as shown and the adaptor should
release and slide off of the nose. Note: Care should be taken not to over stress
the adaptor arms during removal.
B3. Use of the Collect Cuvette application (cuvette and liquid adaptors only):
The Collect Cuvette application is intended for use with the cuvette and liquid vial
adaptors and may be downloaded here:
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http://www.Thermo Scientific.com/PMG/Collect-Cuvette.zip
This application functions exactly as the normal Collect application except that it will
ask the user to manually take a reference/background measurement. At this time the
user should have the adaptor attached with an empty cell in place (cuvette or vial).
Figure B3. Request for manual background measurement when using the
Collect-Cuvette application.
B4. Making applications using Thermo Scientific MG for use with Cuvette and
Liquid Vial Adaptors:
Applications made using Thermo Scientific Method Generator (PMG) software for use
with the Cuvette or Liquid Vial adaptors should be saved with the Internal Reference
disabled. The ability to disable the internal reference is a new PMG feature present only
in PMG version 3.101 or greater:
http://www.Thermo Scientific.com/PMG/PMG-MostRecent.zip
The internal reference can be disabled from the Model Parameters screen that is
displayed when the Create Application button is pushed:
110-00026-02 RevB
Page 43 of 49
Figure 4B. Location of Internal Reference enable/disable checkbox in

Thermo Scientific Method Generator
110-00026-02 RevB
Page 44 of 49
Appendix C: Barcode Reader Option

The microPHAZIR can be optionally equipped with an integrated barcode reader (part
number mPHZR-Bar-1). The barcode reader can read 1-D format barcodes. The
barcode scanner option is built into the sampling head of the PHAZIR as shown in
Figure 1 below.
Figure 1
The bar code reader is activated when the Set Group ID or Set Sample Information
menu items are selected in the microPHAZIR Config menu. These functions can be
accessed by pressing the Config soft key and selecting either Set Sample Info or Set
Group ID.
Note: Hold the microPHAZIR so that the barcode reader is at a right angle to barcode.
Procedure for Using microPHAZIR barcode scanner options:

1. Select Config
2. Select Set Group ID or Set Sample Info depending on your need
3. If Set Sample Info was selected select the desired Sample Information field (the
available options are dependent on the Sample Information field configuration
which is defined within the PHAZIR Application using Thermo Scientific Method
Generation software).
4. Press the microPHAZIR trigger. You will notice the red bar code scanner line.
(see figure 2)
5. Position the microPHAZIR so that the bar code red line covers the bar code. Try
to position the bar code at an approximate right angle to the direction of the bar
code scanner in order to get the best bar code reading. Make sure the red line
cover the ends of the barcode.
Note: the bar code scanner will emit the red line for about 4 seconds. If a bar
code is not successfully registered within 4 second the light bar code scanner will
turn off. To reactive the scanner just press the trigger again.
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6. When the barcode is successfully read you will see the barcode information
displayed on the microPHAZIR display. Press Accept to save the barcode data.
(see Figure 3 and Figure 4)
7. Proceed to the next operation step. Note: the bar code value will automatically
be saved with subsequent measurements.
Figure 2
Figure 3
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Figure 4
110-00026-02 RevB
Page 47 of 49

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Thermo Scientific Handheld Near-Infrared Analyzer