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3 authors, including:
Mohammad Mosharraf Hossain
University of Chittagong
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Review
School of Materials Science, Japan Advanced Institute of Science and Technology (JAIST), 1-1 Asahidai, Nomi City, Ishikawa
923-1292, Japan
b
Department of Applied Physics, Graduate School of Engineering, Osaka University, Suita, Osaka 565-0871, Japan
*e-mail: tamiya@ap.eng.osaka-u.ac.jp
Received: August 2, 2007
Accepted: October 23, 2007
Abstract
Sensing and quantification of DNA and proteins are becoming increasingly important in biochemistry, medicine and
biotechnology. Traditional analytical techniques are lagging behind the demand for more information in less time, at a
lower cost. An important step forward in this pursuit is to identify an analyte using its electrochemical behavior and to
convert its presence and concentration into perceivable and distinct electrical signals. This review covers the strategies
for electrochemical sensing of biomolecules, mainly, DNA and proteins by label-based and label-free approaches
using disposable electrochemical printed chips and carbon nanotube based field effect transistors. Issues, such as ease
of preparation, robustness, sensitivity, and realization of mass production of the detection strategies are also
considered. A good coverage of the published literature, mostly, a wide treatment of original research articles
reporting novel principles has been made. Finally, this review may help the researchers in developing an
understanding of miniaturized electrochemical biosensors and their possible applications in medical and food science,
with directions for future research.
Keywords: Electrochemical DNA biosensor, DEP chip, Field-effect transistor, Carbon nanotube, DNA recognition
interface, Redox-labels
DOI: 10.1002/elan.200704121
1. Introduction
Electrochemical biosensors, a relatively recent brood of
sensors for the detection of biomolecules like DNA,
proteins etc., are used mainly for medical, food and bioterror analytes and are based on electrochemistry and
electrochemical behavior of biomolecules [1]. Partly due to
advancements in electrochemical measuring systems and
partly due to advancements made in bio-analytical chemistry and related fields, electrochemistry has become a rapidly
growing option in the field of biosensors for a wide range of
medical, food, agricultural and environmental analytes with
an expanding, multi-billion dollar market [2]. The merger
between fast, sensitive, selective, accurate, miniaturizable
and low cost electrochemistry-based sensing [3 11] and
fields like genetics, proteomics, biochemistry, and molecular
biology, leads to the evolution of electrochemical sensors of
unparalleled selectivity and sensitivity for a majority of the
analytes being tried on this platform.
Ranges of sensing technologies including, surface plasmon resonance (SPR), electrical, optical, colorimetric,
chromatographic etc., are employed for sensing bio-analytes. These analytical techniques are expensive [12],
complicated and slow [13], whereas virtually inexhaustible
development opportunity and immense market potential
are giving the development of electrochemical sensors an
edge over the others. Miniaturization and low cost instruElectroanalysis 20, 2008, No. 6, 616 626
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Fig. 1. Disposable electrochemical printed (DEP) chips. A) Screen printed standard carbon working electrode. B) Circular carbon
working electrode with a barrier. C) Circular carbon working electrode without any barrier. D) Screen printed circular gold working
electrode. Reference electrode was Ag/AgCl and counter electrode was of carbon for all DEP chips. c: counter electrode; r: reference
electrode; w: working electrode.
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Fig. 2. 2.0 mM K3[Fe(CN)6] redox signal obtained by cyclic voltammogram on different DEP chips. A) Redox signal obtained from
standard carbon working electrode based DEP chip (as shown in Fig. 1A) where K3[Fe(CN)6] compared with 0.3 M Na2SO4. B) Redox
signal obtained from circular carbon working electrode (as shown in Fig. 1B) where K3[Fe(CN)6] compared with 0.3 M Na2SO4. C)
Redox signal obtained from circular gold working electrode based DEP chip (as shown in Fig. 1D) where K3[Fe(CN)6] compared with
0.3 M Na2SO4.
from the free A and G as they hybridize to their complementary bases, thymine (T) and cytosine (C), respectively.
Carbon nanotubes (CNT), owing to their high aspect
ratio, can be used for surface modification of the working
electrode to increase the electroactive surface area, and
thereby to enhance the sensitivity of electrochemical
sensors [46, 47]. CNTKs lightness, inherent hollowness,
good conductivity and mechanical strength make them a
desired material for nanoelectromechanical devices. CNT
based devices have been the subject of extensive studies, and
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(SWCNT) arrayed platinum (Pt) electrodes. With SWCNTmodified electrode, a 100-fold increase in sensitivity was
observed [47].
Casteneda et al. have published an excellent review covering the use of gold nanoparticles for electrochemical sensing
of DNA [75]. Many compounds have been tried as labels by
several groups, for example, hemin was used for electrochemical detection of DNA hybridization and DNA damage [76], daunomycin was used for electrochemical hybridization study of apolipoprotein E (Apo E) [77], methylene
blue was used for guanine signal based detection [78 81],
streptavidin coated gold nanoparticles [82, 83] and Hoechst
33258 were used for DNA quantification [41]. Based on the
biological binding event between a protein and DNA with a
solid transducer and metal nanoparticles, our group has
studied E. coli single-stranded DNA binding (SSB) protein
and single-stranded oligonucleotides conjugated to gold
(Au) nanoparticle label for the electrochemical detection of
DNA hybridization [84]. SSB was attached onto a selfassembled monolayer (SAM) of single-stranded oligonucleotide-modified Au nanoparticle, and the resulting Autagged SSB was used as the hybridization label. Changes in
the Au oxidation signal were monitored upon hybridization
of Au-tagged SSB to the immobilized single-stranded probe
on the electrode surface (Fig. 4).
Protein phosphorylation, important for regulating cellular activities, is amenable to electrochemical detection, and
our group has reported label-free in vitro detection of Tyr
phosphorylation [45]. The current signals from the Tyrosine
(Tyr) kinase substrate peptides were monitored, since
phosphorylation causes a significant suppression in Tyr
oxidation signal. We also observed that electrochemical
oxidation of Tyr distinguishes peptides with Tyr-P residues
from the nonphosphorylated ones. The phosphorylation of
the hydroxyl group of Tyr supposedly prevented oxidation
and also hindered the formation of phenoxonium intermediate in the peptides. Our group also reported enhanced
label-free electrochemical detection of DNA hybridization
by DNA-directed attachment of carbon nanotubes, where
Fig. 4. Schematic illustration of the hybridization detection protocol. Au-tagged SSB binds to the single-stranded probe and amplifies
the Au oxidation signal. However, only a low Au signal can be obtained from the double-stranded hybrid after interaction with SSB
(from [84] with permission).
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3. Medical Analytes
3.1. Genetic Disorder
Many genetic disorders are caused by mismatch in base
pairing and such mismatch in a single base pair is popularly
known as single nucleotide polymorphism (SNP), which can
be diagnosed by detection of specific DNA sequences [29].
The detection of pathogenic microorganisms also takes
advantage of a similar approach based mainly on DNA
hybridization. Electrochemical DNA biosensors, reported
first by Millan and Mikkelsen [4, 101 103] have led to the
development of miniature, portable, sensitive and accurate
point-of-care diagnostic devices by taking the advantage of
specific affinity of ss-DNA [104], or PNA (peptide nucleic
acid) for its complementary strand. Usually, chemisorptive
or electrostatic adsorptive immobilization of ss-DNA or
PNA onto the electrode surface is used to develop the
recognition interface. Factors to be taken into account for
such sensors are type of probe nucleic acid to be immobilized and its interaction with the surface, method employed
for immobilization, the length of linker attaching nucleic
acid to the surface, the surface coverage of probe and the
solution environment.
SNPs determination was done by our group using the
changes in the electrochemical signal of the mono-base
modified colloidal gold nanoparticles [105]. In the scheme a
chitosan layer was formed on the alkanethiol self-assembled
monolayer-modified Au nanoparticle, and mono-bases were
then attached to Au nanoparticle through their 5 phosphate
group using phosphoramidate bond with the free amino
group of chitosan. When SNPs were found, along with the
mismatched bases which are complementary to the monobase, Au nanoparticles were accumulated on the electrode
surface in presence of DNA polymerase I, causing a
significant change in the Au oxidation signal. Transition
and transverse SNPs, even in the presence of interfering
DNA molecules, were detected using this approach. This
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Fig. 7. A) Illustration of the experimental set-up with SWNT-modified Pt microelectrode as the working electrode, Pt wire as the
counter electrode, and miniaturized Ag/AgCl reference electrode with scanning electron microscopy (SEM) images of an SWNTmodified microelectrode. B) Illustration of the label-free electrochemical immunosensor design. Monoclonal antibodies against total
prostate-specific antigen (T-PSA-mAb) were covalently anchored onto the SWNTs using 1-pyrenebutanoic acid succinimidyl ester
(Linker). The peak current for the intrinsic oxidation of proteins, deriving from their electroactive amino acids, increases as the antigen
antibody complex is formed (from [46] with permission).
4. Food Analytes
4.1. Microbial Adulteration of Food
Food adulteration by pathogenic bacteria such as Escherichia coli, Salmonella typhimurium, Campylobacter jejuni,
Legionella pneumophila, Staphylococcus aureus, Bacillus
cereus, Streptococci, etc. causes numerous food borne
diseases, and are responsible for about 91% of all food
borne illnesses in the USA alone [142, 143]. The classical
four-stage method for microbial identification involves preenrichment, selective enrichment, isolation and identification and it requires 16 to 48 hours for completion with a
detection limit in the range of 105 to 106 cells/mL, whereas
electrochemical detection offers a far better detection limit
[144, 145]. The demand for a fast, reliable and sensitive
method for food analysis has paved the path for electrochemical biosensors for this field [146, 147]. In monitoring
food borne bacteria, PCR-gene probe based sensors has
very high potential [148], and there are reports of detection
of less than 40 cells per gram of food sample by this method
without enrichment step [149]. Kim et al. has used different
types of liposomal mediators for the electrochemical
detection and enumeration of hemolytic bacteria in the
range of 5 105 to 2 107 cfu mL 1 [150].
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5. Future Directions
Electrochemical detection of biomolecules has great impact
due to its high sensitivity, easier instrumentation, and
miniaturization potential for development into point-ofcare devices. It has so far been proven to be applicable to a
very wide range of analytes, among which our interest was on
medical and food analytes. The technology associated with
the electrochemical biosensors aiming at detection of microorganisms of importance to medical and food analysis are still
in their infancy in terms of getting translated into systems for
routine applications, though the immense market potential is
driving development towards that end. Still, we need to
develop analytical approaches and systems capable of differentiating among microbes in a multi-organism mix in real
foods or medical analytes, quantifying them quickly at low
cost with very high reproducibility, specificity and sensitivity,
necessarily below their infectious dosages. It is essential to
make highly-automated systems, to minimize the risk of
contamination and human error during handling of such
devices. In case of food analysis, the demand for more robust
systems, capable of detecting GM ingredients and allergens in
food, is becoming more widespread. At the same time, due to
cultural or religious beliefs and practices, there are some
people who want to avoid certain ingredients in food, for this
purpose there is a good demand for hand held devices, where
electrochemical gene sensors can play an important role. In
our group, we have started working towards this end as well.
For such devices, making them disposable through cost
reduction is another facet towards which considerable
research initiative is to be directed, and the DEP chips that
we have developed, are a very important achievement in this
pursuit. In the near future, hopefully, DEP chips will become
a standard component of electrochemical sensors, especially
those intended for food, medical and environmental analytes.
Use of FETalso assists the miniaturization of electrochemical
detection systems, and the use of materials like carbon
nanotubes (CNT), nanoparticles and quantum dots are
should be explored more extensively to enhance the functionality, sensitivity and applicability of electrochemical
sensors.
6. Acknowledgements
Fig. 8. Comparison of various methods for detection of avidin.
A) Coomassie blue-stained SDS-PAGE. B) Western blot stained
with affinity-purified polyclonal antibody raised against avidin. C)
Corresponding voltammetric (SWV) responses. Lanes: 1) molecular weight standards (kDa): myosin (205), b-galactosidase (119),
bovine serum albumin (98), ovalbumin (52.3), carbonic anhydrase
(36.8), soybean trypsin inhibitor (30.1), lysozyme (14), aprotinin
(7.6); 2) native streptavidin; 3) thermally denatured streptavidin
(99 8C, 30 min); 4) 10 mg of avidin-positive maize seed extract; 5)
10 mg of avidin-negative maize seed extract (negative control); 6)
10 mg of avidin-negative corn low-grade flour extract; 7) 10 mg of
avidin-negative corn grout extract; 8) 10 mg of avidin-negative
corn grits extract, and 9) 10 mg of avidin-negative corn farina
extract. (from [158] with permission).
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