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32083215
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Copyright q 1995, American Society for Microbiology
The gene coding for a novel esterase which stereoselectively hydrolyzes the (1)-trans (1R,3R) stereoisomer
of ethyl chrysanthemate was cloned from Arthrobacter globiformis SC-6-98-28 and overexpressed in Escherichia
coli. The cellular content of the active enzyme reached 33% of the total soluble protein in the recombinant E.
coli JM105 cells and 5.6 g/liter of culture by high-density cell cultivation. The hydrolytic activity of the
recombinant E. coli cells for ethyl chrysanthemate reached 605 mmol of chrysanthemic acid per min per g of
dry cells, which is approximately 2,500-fold higher than that of A. globiformis cells. The stereoselective hydrolysis by the recombinant E. coli cells was efficient at substrate concentrations of up to 40% by removing the
produced chrysanthemic acid by ultrafiltration. The (1)-trans-chrysanthemic acid produced had 100% optical
purity. The amino acid sequence of the esterase was found to be similar to that of several class C b-lactamases,
D,D-carboxypeptidase, D-aminopeptidase, 6-aminohexanoate-dimer hydrolase, and Pseudomonas esterase. The
sequence comparison also suggested that the Ser-X-X-Lys motif in the esterase was at the active site of the
enzyme.
59
Probe I
3208
39
ATG GAT GCT CAA ACT ATT GC
C
C
G
C
C
A
A
A
G
G
39
Probe II
Probe III
GATGCGGCCGCTGTGGAAG
The 59 ends of the synthetic oligonucleotide probes were labeled with [g-32P]
ATP and polynucleotide kinase.
Cloning and sequencing of the esterase gene. Chromosomal DNA of A. globiformis SC-6-98-28 was prepared by the method of Saito and Miura (39), except
that 0.3 U of penicillin G (Wako Pure Chemical Co.) per ml was added to the
culture when the turbidity at 660 nm reached 0.3 during A. globiformis
SC-6-98-28 cell cultivation (32). The chromosomal DNA was digested with
several restriction enzymes, and DNA fragments containing the portion of the
esterase gene were identified by Southern hybridization. The nucleotide sequence was determined by the dideoxynucleotide chain termination method
using [a-32P]dCTP.
Computer analysis. Amino acid sequence comparison was done with the
FASTA program (23) and the PRF (Protein Research Foundation, Osaka, Japan) and PIR (National Biomedical Research Foundation, Washington, D.C.)
databases. Clustal V (14) was used for multiple-sequence alignment.
Construction of the expression plasmid. Briefly, a synthetic BamHI-Nsp
(7524)V oligonucleotide fragment shown below and a 1.9-kbp Nsp(7524)VHindIII fragment from pAGE-1 were inserted into the multiple-cloning site of
pKK223-4 to give the expression plasmid pAGE-203:
BamHI
Nsp(7524)V
GATCCTTTTTTAATAAAATCAGGAGGAAAAAATATGGACGCACAGACCATCGCACCGGGCTT
GAAAAAATTATTTTAGTCCTCCTTTTTTATACCTGCGTGTCTGGTAGCGTGGCCCGAAGC
3209
RESULTS
Cloning and nucleotide sequence of the A. globiformis esterase gene. A 0.7-kbp KpnI-digested fragment (Fig. 1, pK12) was
identified by Southern hybridization with both probes I and II
as containing an N-terminal portion of the esterase coding
sequence. The rest of the esterase gene was identified on a
3.3-kbp EcoRI fragment (pE74) with probe III, which corresponded to a sequence between the EcoRI and KpnI sites (Fig.
1, solid box) in the 0.7-kbp KpnI fragment. A 1.7-kbp EcoRIHincII fragment (pEH16) was subcloned from the 3.3-kbp
fragment. A plasmid containing the full length of the esterase
coding region (pAGE-1) was constructed from pK12 and
pEH16.
The nucleotide sequence of the 2.2-kbp KpnI-HincII segment of pAGE-1 is shown in Fig. 2. One open reading frame
with GTG as the initiation codon, coding for a protein of 375
amino acids, was found at positions 211 to 1335. The molecular
weight deduced, 39,836, was approximately in accordance with
that of the esterase purified from A. globiformis cells (32). In
addition, amino acid sequences of the Achromobacter protease
I-digested fragments as well as the N terminus of the esterase
were found within this open reading frame (Fig. 2, underlined
regions). Either of the putative ribosome-binding sites located
upstream of the translation initiation codon (at position 192 or
200; doubly underlined in Fig. 2) complements only three or
four of six bases at the 39 end of the 16S rRNA of E. coli (12).
Unlike other Arthrobacter genes (1, 4, 35, 38), consensus 210
FIG. 1. Restriction map of the A. globiformis genomic DNA fragment containing the esterase gene. The hatched box indicates the open reading frame of
the esterase gene. The positions of the DNA probes used in cloning the esterase
coding region are indicated by open (probes I and II) and solid (probe III) boxes.
Subcloned fragments are shown with the corresponding plasmid names. B,
BamHI; E, EcoRI; H, HincII; K, KpnI; N, Nsp(7524)V; P, PstI.
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NISHIZAWA ET AL.
FIG. 2. Nucleotide sequence and the deduced amino acid sequence of the A. globiformis esterase gene. The 2.2-kbp region cloned in pAGE-1 is shown. The putative
ribosome-binding sites are doubly underlined. The termination codon is indicated by an asterisk. The underlined amino acid sequences are those determined by protein
sequencing of the purified esterase. The positions of the oligonucleotide probes used for cloning the gene are marked with dashed lines.
3211
pH
Temp
(8C)
Yield of
acid (g)
Conversion
(%)
Stereoisomeric
ratio (%)b
10
10
10
10
10
10
15c
20c
30c
40c
9.0
9.5
10.0
9.5
9.5
9.5
9.5
9.5
9.5
9.5
45
45
45
50
55
60
50
50
50
50
1.61
1.79
1.18
2.00
1.87
1.61
1.95
1.87
1.89
1.71
79
88
58
98
92
79
64
46
31
21
NT
NT
100:0:0:0
100:0:0:0
99.3:0.7:0:0
99.2:0.8:0:0
NT
NT
NT
NT
a
Reactions were done on a 50-ml scale. Cultured cells obtained by highdensity cell cultivation were used in each experiment. Reactions were started by
the addition of 62.5 U (1.0-ml culture broth equivalent) of the cells and continued for 6 h.
b
(1)-trans/(1)-cis/(2)-trans/(2)-cis-chrysanthemic acid ratio. NT, not tested.
c
Cells (125 U) were added at 6 h, and the reaction was continued for another
24 h.
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NISHIZAWA ET AL.
FIG. 3. Multiple amino acid sequence alignment of A. globiformis esterase, class C b-lactamases, Pseudomonas esterase, and D,D-carboxypeptidase. K12, E. coli K-12
cephalosporinase ampC (16); P99, Enterobacter cloacae b-lactamase (11); CF, Citrobacter freundii OS60 b-lactamase (22); EST, A. globiformis esterase (this study); PSE,
Pseudomonas sp. strain LS107d2 esterase (29); R61, Streptomyces R61 D,D-carboxypeptidase (10). The mature portions of the proteins are aligned. Conserved regions
are hatched. The residues forming the active site of b-lactamases and D,D-carboxypeptidase suggested from crystallographic structures are in reversed font. Dashed lines
indicate gaps introduced for better alignment. Numbers above the lines denote amino acid positions of the A. globiformis esterase. Asterisks denote amino acids
perfectly conserved in all six proteins, and dots denote well-conserved amino acids.
3213
Activity
(U)b
Yield
(%)
Amt of
protein (mg)
Sp. act.
(U/mg)
Cell extract
(NH4)2SO4 (0 to 30%)
DEAE-5PW
2,922
1,596
1,566
100.0
54.6
53.6
168.8
46.9
29.9
17.3
34.0
52.4
a
Steps carried out with 10.0 ml of culture broth obtained from a high-density
cell cultivation experiment.
b
Enzyme activity was measured with phenolphthalein dibutyrate as a substrate.
isoelectric point, 5.2. No reduction of specific activity was observed when the esterase was highly expressed in E. coli cells.
DISCUSSION
We have cloned the gene encoding the esterase from A.
globiformis, which has ethyl chrysanthemate-hydrolyzing activity with excellent stereospecificity for the (1)-trans stereoisomer. Probably because of the sequence features of the esterase
in the 59-flanking region, as mentioned in Results, E. coli cells
FIG. 6. SDS-PAGE analysis of the fractions from the purification step. The
esterase was purified from E. coli JM105/pAGE-203 cells cultivated at high
density under optimized conditions. Lanes: 1 to 3, each purification step in Table
2; M, molecular weight standards (phosphorylase b, 92,500; bovine serum albumin, 66,700; ovalbumin, 45,000; carbonic anhydrase, 31,000; soybean trypsin
inhibitor, 21,500; lysozyme, 14,400). In each lane, 2.0 mg of proteins was applied.
3214
NISHIZAWA ET AL.
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24.
25.
26.
27.
28.
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33.
34.
35.
36.
37.
38.
39.
40.
41.
42.
43.
44.
45.
46.
47.
48.
3215
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