Beruflich Dokumente
Kultur Dokumente
characterized
: molar mass
geometrical size and shape
* natural
- polysaccharides
- polypeptides
- nucleic acid
* synthetic
- polymers:
nylon
polystyrene
http://physics.ucsc.edu/~sacarter/polymers.shtml
LEVELS OF STRUCTURE
= X-ray diffraction
Limitations:
-single crystal
-crosslinking
-mixture of molecules
-natural shape
http://pubs.usgs.gov/of/2001/of01-041/htmldocs/xrpd.htm
Franklin and
Gosling
http://www.learner.org/courses/essential/physicalsci
/session5/closer1.html
DNA
http://en.wikipedia.org/wiki/Rosalind_Franklin
* by light-scattering experiments
= weight-average molar mass, MW
* by sedimentation experiments -
1
M n Ni Mi
N i
mi NiMi/NA
1
M w mi Mi
m i
Mw
iNi M
iNi Mi
2
i
Mz
iNi M
iNi Mi2
3
i
VISCOMETER
(intrinsic viscosity)
Assumption:
-slow moving liquid where t>100s
-monodisperse macromolecule
http://en.wikipedia.org/wiki/Viscometer
Polydisperse
Osmosis
-movement of molecules through a semipermeable
membrane
11
Osmosis
Examples:
(a) Transport of fluids through living cell
membranes ,
(b) Basis of osmometry, determination of
molecular mass by measurement of osmotic
pressure.
12
Osmometry
= vant Hoff equation
- an ideal solution - non-ideal solution
= [P]RT
= [P]RT(1 + B[P] + . . . . .)
? how do we relate the equation to molar mass ?
[P] = related to mass concentration c
Mn
if
= number-average molar mass of P
then,
RT B
1 c ......
c M
n
where
M=n rgh
RT B
1 c ......
c Mn Mn
uP , excluded volume
uP = 8u
from a plot of (h/c) against c :
RT B
slope
x
g M n M n
RT
y - intercept
g M n
RT B
1 c ......
c Mn Mn
RT B
slope
x
g M n M n
from the slope, B is obtained B = NAuP
uP
approximate volume of a molecule
approximate radius
thermodynamically,
= excluded volume
excess entropy
= attraction and repulsion
excess enthalpy
for most solute-solvent system
= q solution
Osmometry
h
17
Osmosis
Eventually the pressure difference between the
arms stops osmosis.
18
19
*A ( p) A ( x A , p )
account for the presence of solute
A ( x A , p ) *A ( p ) RT ln x A
take the effect of pressure into account
p
*A ( p ) *A ( p) Vm dp
p
- RT ln x A
V dp
m
RTxB Vm
nB
When the solute is dilute, xB . Because nAVm = V,
nA
total volume of the solvent, the equation simplifies to
p = [M ]RT
Vant Hoff
Eq.
nB
where [M ] =
is the molar concentration of the solute
V
21
22
1.00
0.28
2.00
0.71
4.00
2.01
7.00 9.00
5.10 8.00
h
RT
c rgM
Bc RT RTB
c
1
2
M rgM rgM
24
25
RT
1
M
rg 0.21 cmg -1 L
8.314 JK
-1
-1
mol (298 K )
1
-3
-2
(980 kgm ) (9.81ms ) 2.110 -3 m 4 kg -1
1.2 10 kgmol
2
-1
Vapour-phase Osmometry
VAPOR OSMOMETRY
http://willson.cm.utexas.edu/Teaching/Chem367L392N/Files/Vapor%20Pressure%20Osmometry.pdf
http://willson.cm.utexas.edu/Teaching/Chem367L392N/Files/Vapor%20Pressure%20Osmometry.pdf
http://panza.uchicago.edu/Phys.261/materials/Osmometer/
http://willson.cm.utexas.edu/Teaching/Chem367L392N/Files/Vapor%20Pressure%20Osmometry.pdf
problems:
(1) variable number of cations per single
macromolecules
(2) presence of salt affects osmotic pressure
= high concentration of added salt
= molar mass can be obtained unambiguously
Donnan Equilibrium
= physiological systems
Donnan equilibrium
The equilibrium characterized by an unequal distribution of
diffusible ions between two ionic solutions (one or both of the
solutions may be gelled) separated by a membrane which is
impermeable to at least one of the ionic species present, e.g.
because they are too large to pass through the pores of the
membrane. The membrane may be replaced by other kinds of
restraint, such as gelation, the field of gravity, etc., which prevent
some ionic components from moving from one phase to the other,
but allow other components to do so.
Donnan Equilibrium
in this system:
the diffusible ions will move across the membrane
equilibrium
the Donnan principle :
Donnan equilibrium
Na+
C1
PC1
internal solution
Na+ ClC2 C2
external solution
at equilibrium:
internal (NaCl) = external (NaCl)
@ at equilibrium:
internal (NaCl) = external (NaCl)
or
RT ln ai(Na+)ai(Cl-) = RT ln ae(Na+)ae(Cl-)
[Na+]i[Cl-]i = [Na+]e[Cl-]e
requirement for Donnan equilibrium
membrane:
[Na ]i - [Na ]e
xP [Na ]i
xP [Na ]i
[
]
[
]i
xP
xP
Cl
Cl
i
where:
= RT [P]{1 + B [P]}
where:
2
x Cl e
B
- 2
4Cl 2xP Cl-
thus,
* when salt concentration is so high
[Cl-]i and [Cl-]e >> [P]
then,
B[P] << 1
and = RT[P]
SEDIMENTATION
= heavy particles settle down the bottom of a
column of solution
rate of sedimentation depends on:
(a) strength of the field
(b) masses and shape of the particles
at equilibrium:
rate of sedimentation
* consider a solute of mass, m and with an effective mass
meff = bm with b = 1 - rus
(vs = (V/mB)T -partial specific volume
at drift speed
centrifugal force = frictional force
meff r w2 = f s
2
2
thus,
meff r bmr
s
speed
f
f
s
S 2
r
since,
S bMn
NA
then,
fNA
S bmrw2 b Mn
6ahNA
frw
D
* D, diffusion coefficient
= a measure of the rate at which molecules
spread down a concentration gradient
it follows,
SRT
Mn
bD
SRT
Sedimentation Equilibria
Mn
bD
* difficulty in using sedimentation rates to measure
molar masses lies
- inaccuracies inherent in the determination of
the diffusion coefficients
-E1
c1 N1 e kT -b m ( r - r ) 2kT
e
-E
c 2 N2 e kT
2
2
2
2
1
so that,
2RT
c
ln
MW
(r - r ) c
2
Sedimentation/Ultracentrifugation
http://biophy.uchicago.edu/ultracentrifugation.php
Sedimentation velocity is an
analytical ultracentrifugation
(AUC) method that measures the
rate at which molecules move in
response to centrifugal force
generated in a centrifuge. This
sedimentation rate provides
information about both the
molecular mass and the shape of
molecules. In some cases this
technique can also measure
diffusion coefficients and
molecular mass.
http://www.ap-lab.com/sedimentation_velocity.htm
http://www.nottingham.ac.uk/ncmh/harding_pdfs/Paper116.PDF
http://biophy.uchicago.edu/ultracentrifugation.php
http://www.nottingham.ac.uk/ncmh/harding_pdfs/Paper116.PDF
Colligative Properties
= classical methods for molar mass
* for macromolecules = the number of molecules in solution may be
very small though the mass of the
solute may be appreciable
= only osmometry is sufficiently sensitive
Electrophoresis
= motion of macromolecules in response to an
electric field
electrophoretic mobility
= result of a constant drift speed, s, when the driving
ezE equals the viscous retarding force, fs
force
Gel electrophoresis
= migration takes place through a cross-linked
polyacrylamide gel
= to separate a sample according to the molar
masses of its components
however, shape and net charge will also determine the
drift speed
example:
proteins with the same size but different net charge
travel along the slab at different speeds
Gel electrophoresis
- to avoid this problem and to effect a separation by
molar mass
controlled denaturation of the proteins
(sodium dodecyl sulfate, an anionic detergent denatures
proteins into rods by forming a complex )
* most proteins bind a constant amount of ion, thus the
net charge per protein is well regulated
* under this conditions, different proteins in a mixture
may be separated according to size only
* molar mass is estimated by comparing its mobility in its
rod-like complexes form with a standard sample of
known molar mass
Isoelectric point
in aqueous medium, naturally occurring
macromolecules acquire a charge
proteins and other biopolymers is that their overall
charge depends on the pH of the medium
* in general,
- in acidic media protons attach to basic groups
the
net charge is positive
- in basic media protons are lost
the
net charge is negative
at the isoelectric point, pH at which net charge of bp is zero
- thus, the drift speed of a biopolymer depends on the
pH of the medium
s = 0 at the isoelectric point
Isoelectric focusing
(separation based on isolectric pt.)
= an electrophoresis method that is based on the
change of drift speed with pH
* consider : mixture of distinct proteins dispersed in a
medium with a pH gradient along the direction of an
applied electric field
each protein in that mixture will stop moving at a
position in the gradient where the pH is equal to the
isoelectric point
the protein mixture can be separated into its
components
Capillary electrophoresis
drift speed (traditional electrophoresis methods)
=
rather low
several hours are often necessary to effect good
separation of complex mixture
Capillary electrophoresis
Solution:
= the sample is dispersed in a medium and held in a
thin glass or plastic tube (diameters, 20 - 100 m)
= small size of the apparatus makes it easy to
dissipate heat when large electric fields are
applied
excellent separations may be effected in minutes
rather than hours
each polymer fraction emerging from the capillary
can be characterized further by other
techniques
Viscosity
- presence of macromolecular solute
increases the viscosity of a solution
- effect is larger at lower concentrations
- at low concentrations,
h = h* ( 1 + [h]c + )
where, [h] is the intrinsic viscosity
- 1
*
h lim
c 0
c
t
x
* t * *
Rotating Drum viscosimeter
- rotating concentric cylinders and the torque
on the inner cylinder is monitored while
the
other cylinder is rotate
Light Scattering
= electromagnetic radiation falls on an object
radiate
if the medium is perfectly homogeneous
= all the secondary waves interfere destructively
except the original propagation direction
if the medium is inhomogeneous
= radiation is scattered into other directions
Light Scattering
Scattering by particles with diameters much
smaller than the wavelength of the incident
radiation
= Rayleigh scattering
Characteristics of Rayleigh scattering
intensity of scattered radiation depends on 1/l4
shorter wavelength radiation is scattered more
intensely than longer wavelength
of
mathematically,
- scattering intensity, I, at the angle q
I AIo M W g[P]
= 1 + cos2q
(for unpolarized light)
= cos2q
(for polarized light)
= incident intensity
= molar concentration of the solute
= weight-average molar mass
MW
A = constant
where, g
g
Io
[P]
t MW
dn
where, H dc , n = refractive index
Hc
plotting t against c
* y-intercept = weight-average molar mass
Large-particles scattering
*as a result,
- the scattering intensity is distorted
I
P observed
IRayleigh
= a measure of the distortion is the ratio,
sinsRij
2
sRij
N i j
where
4 1
s sin
Small-particle scattering
P - 1 Rg2
1 2
Rij R g
N ij
it follows,
2
1
2
s
P 2 1 sRij ..... 1 - 2 Rij2 .....
6
6 N ij
N i j
1 2 2
P 1- s Rg
3
showing that
P - 1 R g2
R
g R
solid sphere particle of radius R :
5
1
Rg
2 3
long thin rod of length l :
Light Scattering
http://www.nbtc.cornell.edu/facilities/downloads/Zetasizer%20chapter%2015.pdf
http://www.nbtc.cornell.edu/facilities/downloads/Zetasizer%20chapter%2015.pdf
http://www.nbtc.cornell.edu/facilities/downloads/Zetasizer%20chapter%2015.pdf
Mass Spectrometry
= among the most accurate techniques for determination of
molar masses
= consists of ionizing the sample in the gas phase
measure : mass-to-charge number ratio (m/z) of all
ions
= macromolecules - a challenge - difficult to produce
gaseous ions of large species without fragmentation
- two new techniques :
matrix-assisted laser desorption/ionization (MALDI)
electrospray ionization
Mass Spectrometry
= commonly used is the MALDI-TOF mass spectrometry
the macromolecule is first imbedded in a solid matrix
organic material and inorganic salts
sample is then irradiated with a pulsed laser(nitrogen
laser)
the laser energy ejects electronically excited matrix
ions, cations, and neutral macromolecules
=
creating a dense gas plume above the sample
surface
the macromolecule is ionized by collisions and
complexation with small cations, like H+, Na+, & Ag+
Mass Spectrometry
- in the TOF spectrometer, the ions are accelerated over a
short distance d by an electrical field of strength, E
and then travel through a drift region of length l
- the time, t, required for an ion of mass m, and charge
number z, to reach the detector at the end of the drift region
is
1/ 2
m where e = fundamental charge
t l
2zeEd
* because d,l, and E are fixed for a given experiment, the
time of flight t, of the ion is a direct measure of its m/z
ratio, which is given by
2
m
t
2eEd
z
l
COLLOIDS
true solution - - - - - - - - - - - - - - - suspension
sugar or salt
soil in water
in water
(large molecules or
aggregates)
colloidal suspension
between extremes
no distinct line of separation between them
COLLOIDS
* colloidal dispersion
= suspension of finely divided particles in a
continuous medium
particles = the dispersed phase or colloid
medium = the dispersing medium
* dispersing medium may be solid, liquid, or gas just
as the disperse phase
COLLOIDS
COLLOIDS
* essential properties :
due to the fact that the ratio of surface area to
volume
= very large
in
Liquid
Solid
Dispersed phase
Gas
Liquid
Solid
Aerosol
Foam
(whipped cream)
Aerosol
(smoke)
Sol
(Au in water)
Solid Foam
Gel
Gel
(pumice, Styrofoam)
(jelly)
COLLOIDS
Lyophobic and Lyophilic Sols
= lyophobic sols
- dispersed phase: low affinity for the medium
- hydrophobic sols if the medium is water
= lyophilic sols
- strong affinity between the disperse phase and
the dispersion medium
COLLOIDS
preparation:
- substances maybe known as :
= intrinsic colloids - readily form sols in contact with
a suitable dispersion medium
= extrinsic colloids - do not form colloidal
dispersions readily
COLLOIDS
- method : two classes
(1) condensation
= initially in true solution
= chemical reactions are used to produce the sol
ex. sols of various oxides have been prepared by
hydrolysis of salts
COLLOIDS
- method : two classes
(2) Dispersion
= originally in massive form is disintegrated into
particles of colloidal dimensions
(a) peptization
(b) physical dispersion methods
(c) electrical disintegration
COLLOIDS
Light Scattering
= optically clear medium path of light cannot be
detected (particle size not larger than
about 10-9 m in diameter)
= with colloidal particles, some of the light is scattered
the path of light through the medium is made
visible due to scattering
known as Tyndall effect
COLLOIDS
Electrical Properties
= application of an electric potential across two electrodes
placed in a sol
migration of colloidal particles in an electric field
is called electrophoresis
COLLOIDS
Gels
= under certain conditions, lyophilic sol maybe
coagulated and produces a semi-rigid jellylike mass
product is known as gel
* two types:
- elastic gels : food products, jellies, jams, and
cornstarch puddings
- nonelastic gels : silicic acid or commonly known as
silica gel
COLLOIDS
= main difference: behavior on dehydration
elastic gel forms an elastic solid = original sol
can be regenerated by the addition of water
non-elastic gel leads to a glass or powder
COLLOIDS
Emulsions
= droplets of one liquid dispersed in another liquid
COLLOIDS
Emulsions
= soaps and detergents :effective emulsifying agents for oilwater emulsions
HC chains become attached to the oil and the
polar groups to the water
* micelle : refers to particles that are stabilized by
emulsifying agents
emulsifying agents reduce the interfacial tension
between the two phases
COLLOIDS
Structure and stability
= colloids are thermodynamically unstable
but kinetically nonlabile
the change in Gibbs energy, dG, when the surface
area of the sample changes by d at constant T & P
is dG = d, where is the interfacial tension, it
follows the dG <0 if d <0
= colloidal particles attract each other over large
distances, so there is a long-range force that tends to
condense them into a single blob
COLLOIDS
Structure and stability
reasons:
= the energy of attraction between two individual atoms i
and j, varies with their separation as 1/(Rij)6
COLLOIDS
Structure and stability
* factors opposing the long range dispersion attraction
for example:
= a protective film at the surface of the colloid particles
stabilizes the interface and cannot be penetrated
- thus, the surface atoms of a platinum sol in water
react chemically and are turned into Pt(OH)3H3,
and
this layer encases the particle like a shell
= a fat can be emulsified by a soap because the long HC
tails penetrate the oil droplet but the carboxylate head
groups surround the surface, form H-bonds with
water, and give rise of negative charge
COLLOIDS
Electrical double layer
kinetic nonlability of colloids
existence of an electric charge on the surfaces
COLLOIDS
Electrical double layer
- 1st, fairly immobile layer of ions that adhere tightly to the
surface of the colloidal particle
the radius of the sphere (rigid layer) is called the
radius of shear
= factor
determining the mobility of the particles
COLLOIDS
Electrical double layer
- 2nd, the charged unit attracts an oppositely charged
atmosphere of mobile ions
the inner shell of charge and the outer ionic
atmosphere is called the electrical double layer
COLLOIDS
Electrical double layer
* DLVO theory : theory of the stability of lyophobic
dispersions (B. Derjaguin & L. Landau and E. Verwey and
J.T.G. Overbeek)
= assumes : balance between the repulsive interaction
between the charges of the electric double layers on
neighboring particles and the attractive interactions
arising from van der Waals interactions between the
molecules in the particles
= the potential energy arising from the repulsion of
double layers on particles
-s
Aa
e rD
Vrepulsion
R
2
1/ 2
RT
rD
2 q
2rF Ib
B
Vattraction s
b = 1 mol kg1
COLLOIDS
Electrical double layer
COLLOIDS
electrical double layer
ionic strength is increased by the addition of ions,
particularly those of high charge type
= such ions act as flocculating agents
basis: Schulze-Hardy rule
that hydrophobic colloids are flocculated most
efficiently by ions of opposite charge type and high
charge number
COLLOIDS
electrical double layer
Schulze-Hardy rule
- Al3+ ions are very effective
used to induce the congealing of blood
- when river water with colloidal clay flows to the sea
the salt water induces flocculation and
coagulation
= a major cause of silting in estuaries
- metal oxide sols tend to be positively charged
whereas sulfur and the noble metals tend to be
negatively charged
COLLOIDS
electrical double layer
primary role of the electric double layer :
to confer kinetic non-lability
= particles coalesce only if
collision is sufficiently energetic to disrupt the layers
of ions and solvating molecules, or
- thermal motion has stirred away the surface
accumulation of charge
= disruption may occur at high temperatures
- sols precipitate when they are heated
COLLOIDS
electrical double layer
protective role of the double layer
= the reason why
- it is important not to remove all the ions
when a colloid is being purified by dialysis,
and
- proteins coagulate most readily at their
isoelectric point
MICELLES
Micelle Formation
-CRITICAL MICELLE
CONCENTRATION (CMC)
-Krafft temperature.
-ionic surfactants cluster of 100
-non-ionic surfactants-cluster of
1000
Spherical liposome
SURFACE FILMS
Monolayers
Langmuir-Blodgett Films monolayer on a solid support
Collapse pressures
Gibbs Isotherm
http://www.attension.com/critical-micelle-concentration
http://chemweb.calpoly.edu/jhagen/CMC_Surface_Tens.pdf
Interfacial tension ij
-force/unit length (mN/m or J/m2)
-arises from the imbalance of
forces
-on molecules at the interface
(i.e. gas-liquid)
-caused by the attraction between the
molecules of the liquid by various
intermolecular forces
wiiir/wiii//5/5/rllrh
PULL METHODS
htt://wwwulu/h/C446/Exrit/x1
htt://wwwulu/h/C446/Exrit/x1
htt://wwwulu/h/C446/Exrit/x1
=F/Lcosq
= r (h +r/3 )rg/2cos
R
x
h
http://www.udel.edu/pchem/C446/Experiments/exp1.pdf
Curved surfaces
YOUNG-LAPLACE EQUATION
Increase in Area:
dA= (r1 + r2) r
DROP METHOD
Young equation
(homogeneous, smooth, rigid solids)
LV
Vapor
SV
Liquid
SL
Solid
LV
Strain field
SV
Liquid
dA
SL
Wettability
Contact angle:
0
180
cos 1
90o
0
SL= SV
-1
Negligible wett.
Non-wett.
For wetting to occur, the surface energy of the solid should be greater
than the liquid:
1) hard solids - covalent, ionic, metalic => high energy surfaces SV 500 to 5000 ergs/cm2
2) weak molecular crystals - vdW, H bonds => low energy surfaces V 50 ergs/cm2
Thank you!
Jose S. Solis, Ph.D.
Imee Su Martinez, Ph. D.
Institute of Chemistry
University of the Philippines - Diliman