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INTERNATIONAL JWJRNAL OF SYSTEMATIC BACTERIOLOGY, OCt. 1977, p. 355-361 Vol. 27, No.

4
Copyright 01977 International Association of Microbiological Societies Printed in U.S.A .

Acetobacterium, a New Genus of Hydrogen-Oxidizing, Carbon


Dioxide-Reducing, Anaerobic Bacteria
WILLIAM E. BALCH, S. SCHOBERTH,? RALPH S. TANNER, A m R. S. WOLFE
Department of Microbiology, University of Illinois, Urbana, Illinois 61801

A new genus of fastidiously anaerobic bacteria which produce a homoacetic


fermentation is described. Cells are gram-positive, oval-shaped, short rods which
are actively motile by means of one or two subterminal flagella. Hydrogen is
oxidized, and carbon dioxide is reduced to acetic acid. Organic substrates which
are fermented in a mineral medium include fructose, glucose, lactate, glycerate,
and formate. Pantothenate is required as a growth factor. The deoxyribonucleic
acid base composition of the type species is 39 mol% guanine plus cytosine. The
name Acetobacterium is proposed for this new genus, which is tentatively placed
in the family Propionibacteriaceae. The type specie!, Aceto bacterium woodii
sp. nov., is named in honor of Harland G. Wood. The type strain of A. woodii is
WB1 (= ATCC 29683 and DSM 1030).

Homoacetic fermentationsof carbohydrate by 4H2 + 2HCO:3- + H' * CH&OO- + 4HzO (1)


anaerobic bacteria are rare. For a number of
years, Wood and his associates studied the total The AG'(, of this reaction is -25.6 (4). To our
synthesis of acetate from carbon dioxide in the knowledge, this is the first organism to be iso-
homoacetic fermentation of glucose by Clos- lated, since the loss of C. aceticum, which is
tridium thermoaceticum (5, 8, 14, 15). Results capable of reducing carbon dioxide to acetic acid
of recent work indicate that in the 1 mol of by the use of molecular hydrogen. A brief report
acetate which is synthesized from 2 mol of car- on this organism has appeared previously (S.
bon dioxide by this organism, the carboxyl group M. Schoberth and W. E. Balch, Abstr. Annu.
of pyruvate rather than free carbon dioxide is Meet. Am. SOC.Microbiol. 1975, 190, p. 131).
the precursor of the carboxyl group of acetate
by a transcarboxylation reaction (14). Clostrid- MATERIALS AND METHODS
ium formicoaceticum likewise produces a ho- Bacterial strains. Strain WB1 of the acetogenic
moacetic fermentation of fructose (1, 11). These organism was isolated from black sediment of Oyster
organisms require reduced organic compounds Pond Inlet, a marine estuary, Woods Hole, Mass.
as substrates, and neither organism produces Strains RT1 and RT2 were obtained from black sedi-
nor uses molecular hydrogen. ments of Crystal Lake, Urbana, Ill.
The oxidation of hydrogen and the reduction Media. Sterile media for the isolation, subculture,
of carbon dioxide to acetic acid by a stabilized and maintenance of organisms were prepared by tech-
enrichment culture were reported in 1932 (6); a niques recently described (2). Basal medium ( M l )
contained (in grams per liter of distilled water): NH4C1,
few years later, the isolation of Clostridium ace- 1.0; MgSO, . 7Hz0, 0.1; KzHP04, 0.4; KH2P04, 0.4;
ticum was accomplished by Wieringa (16, 17). resazurin, 0.0oO1; cysteine . HC1, 0.5; Na2S.9H.0, 0.5;
This organism produced acetic acid from hydro- NaHC03, 2.0. Vitamin solution and mineral solution
gen and carbon dioxide as well as from carbo- (18) were each added in 10-ml amounts to 1 liter of
hydrates. Unfortunately, C. aceticum was lost medium. The final pH of the medium, after sparging
soon after the third paper on this anaerobe was with nitrogen or hydrogen which contained 20% car-
published in 1948 (7). Repeated attempts to bon dioxide, was 6.7. When medium M I was incubated
reisolate it in various laboratories over the past in a pressurized atmosphere of Hz-COz (67:33) of 2
25 years have failed. atm, NaHC03 was added at a concentration of 7 g
per liter. Solid medium (M2) for plates was prepared
We report here the isolation of an organism by the addition of the following compounds (grams
which produces a homoacetic fermentation and per liter) to medium M1: Noble agar (Difco), 20.0;
which grows by the anaerobic oxidation of hy- CaCO:I,10.0; and yeast extract (Difco), 2.0. Plates were
drogen and reduction of carbon dioxide accord- poured and streaked in an anaerobic chamber and
ing to the following equation: were then incubated under a gas mixture of Hz-CO2
(67:33) at a pressure of 2 atm by the use of techniques
t Present address: Institut fur Mikrobiologie der Univers- which we have recently described in detail (2). Organic
itat, D-3400 Gottingen, Federal Republic of Germany. substrates (see Table 1) were added at a final concen-
355

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356 BALCH E T AL. INT.J. SYST.BACTERIOI,.

tration of 0.5% (wt/vol) to either medium M1 or M2 RESULTS


as desired.
Methods. Growth of the organism in each culture Development of enrichment-culture
tube (optical path 18 mm) was followed by measuring techniques. In the studies reported here, evi-
the absorbancy in a Bausch and Lomb spectrophotom- dence for hydrogen-oxidizing acetogenic bacteria
eter model 20 at 660 nm. Gas consumption by the was first observed in an enrichment culture for
organism was determined by measurement at appro- hydrogen-oxidizing methanogenic bacteria. The
priate intervals during growth of the pressure inside
each culture tube (2). Cells were mass-cultured in culture was initiated by inoculation of 0.5 ml of
fermentors by techniques reported previously ( 3 ) ;the black lake sediment into 8 ml of medium MI in
fermentor contained a pH electrode, and sterile NaOH a tube (18 by 150 mm) fitted with a solid black
was automatically added to maintain the pH at 6.7. rubber stopper pierced by two 20-gauge hypo-
The production of acetate was determined by the dermic needles, one of which reached to the
acetate kinase method (12), and the utilization of bottom of the tube and the other of which, being
fructose was determined by the method of Nelson only 2 cm long, did not. A mixture of HZ-CO,
(10). A Packard gas chromatograph equipped with a (80:20) was passed through the longer needle at
Poropak Ql00-120 mesh column and an electron-cap- a rate of about 0.5 cm"/min, and the effluent
ture detector was used to quantitate hydrogen and
carbon dioxide.
was vented through tubing from the short needle
To study the stoichiometry of HL oxidation and so that it bubbled through water in an open
C 0 2 reduction to acetic acid, growth of cultures was tube. To insure a more efficient use of gases,
followed in sealed tubes in medium MI. Each tube several tubes were connected in series by poly-
was pressurized to 2 atm with a mixture of HI-COL ethylene tubing so that the effluent of one tube
(67:33). An inoculum which represented 2% of the became the influent for the next. After 3 weeks
medium volume was added to tubes in which growth of continuous bubbling at room temperature, no
was to be followed; uninoculated tubes served as con- methane was detected in the effluent, but acetic
trols to determine possible gas loss through leakage acid was readily detectable. The black rubber
during sampling. At each time period, a 100-pl sample
stoppers were swollen and deformed, exhibiting
of medium was removed with a syringe and was as-
sayed for acetate. The gas pressure in each tube was the typical response of such stoppers when they
measured, and gas consumption was calculated (2). are exposed to vapors of acetic acid. The turbid-
Acetic acid which was formed during growth was ity of the medium was negligible, and we were
neutralized by injection of sterile 0.5 M NaOH. amazed that such a small biomass could produce
For the determination of the vitamin requirements acetic acid in an amount sufficient to produce
of the acetogenic organism, medium M1 was prepared the above-mentioned results.
without the addition of the vitamin solution, and With black sediment from a marine estuary,
NaHCOl (7 g/liter) was added. A 5-ml amount of the experiment described above was repeated
medium was placed in each tube, and sealed tubes with similar results. After 4 weeks of bubbling
were pressurized to 2 atm with a gas mixture of H2-
COz (67:33). with the mixture of HZ and Con,the pH of the
For isolation of deoxyribonucleic acid (DNA), cells medium was 5.0. Results of a gas-chromato-
were suspended at a concentration of 0.4 g/ml in 0.2 graphic analysis of the medium indicated that
M ethylenediaminetetraacetate (pH 8) which con- a single product, acetic acid, was produced in a
tained 0.075 M NaCl and were passed through a concentration which reached 0.06 M. Micro-
French pressure cell a t 3,000 lblin'. Sodium dodecyl scopic examination of the growth liquor revealed
sulfate was added to the cell lysate at a final concen- a dominant population of oval-shaped, highly
tration of 2%, and the DNA was purified from the motile cells frequently occurring in pairs.
lysate by the method of Marmur (9) with the following When enrichment cultures were attempted in
modifications: (i) the lysate was incubated a t 37C
overnight with 3 mg of Pronase (Calbiochem, La Jolla, a closed system, growth of methanogenic orga-
California) per ml prior to the addition of sodium nisms interfered with the isolation of the aceto-
perchlorate; (ii) after the pancreatic ribonuclease genic bacteria. One of us (R.T.) devised a selec-
digestion of the DNA preparation, the digest was tive medium in which the addition of sodium
deproteinized using water-saturated phenol. The dithionite inhibited the growth of methanogenic
buoyant density of the DNA was determined by a bacteria. Methanobacterium ruminantium
cesium chloride density gradient centrifugation in a strain M-1, for example, was inhibited at a con-
Beckman model E ultracentrifuge. The moles percent centration of 5 mg/100 ml of medium, whereas
guanine plus cytosine (G+C) was calculated by the the acetogenic bacteria were resistant to concen-
method of Schildkraudt et al. (13).DNA from Micro-
coccus luteus was used as a standard.
trations as high as 40 mg/100 ml. A successful
For electron microscopy, cells were negatively enrichment was obtained by placing a 5-ml sam-
stained with a 3% aqueous solution of uranyl acetate, ple of black sediment in a 100-ml serum bottle,
pH 4.8. Micrographs were taken with a Philips EM which was then sealed and flushed with hydro-
301 microscope. gen. A 5-ml amount of medium M1 which con-

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VOL. 27,1977 ACETOBACTERIUM, A NEW GENUS 357
tained 1 mg of sodium dithionite was injected tions. When tested, the colonies did not give a
into the sealed bottle. By use of techniques positive catalase reaction. The organism (desig-
recently described (2),an atmosphere of H2-C02 nated strain WB1) proved to be a strict anaer-
(67:33) was placed in the bottle to a final pres- obe, and it was cloned, maintained in stock
sure of 1.7 atm. Each bottle was incubated at culture, and subcultured by a modification of
30C without shaking, since for unknown rea- the Hungate technique (2). Colonies were com-
sons agitation of the culture inhibited growth. posed of nonsporeforming, motile, oval-shaped
Each culture bottle was repressurized every 3 rods which frequently occurred in pairs. The
days until the production of acetic acid reached rods measured about 1 pm in width and about
the 100 mM level. 2 pm in length and contained a single, long,
Isolation of bacteria. A sample from a suc- subterminal flagellum and fine pili-like struc-
cessful enrichment culture, which had been in- tures (Fig. 2B). Rarely, cells with two subter-
oculated with sediment from a marine estuary, minal flagella were also observed. A study by
was streaked on medium M2, and plates were Mayer and Schoberth on the ultrastructure of
incubated at 30C as previously described (2). this organism is being published elsewhere
Acetogenic colonies were distinguished by a (manuscript in preparation).
clearing of the CaC03 in the vicinity of each Substrates utilized for growth. Evidence
colony (Fig. 1). Circular, convex colonies were presented in Table 1 indicates that the aceto-
usually visible after a few days and reached a genic organism (strain WB1) can oxidize sub-
diameter of 1 mm in 7 to 10 days. Older colonies strates other than hydrogen but that the sub-
showed a slight yellow pigmentation; however, strate range is rather narrow, being limited ;0
no fluorescence was observed under ultraviolet fructose, glucose, lactate, glycerate, and forma e.
light either under anaerobic or aerobic condi- The only major product detected was aceta e;

FIG. 1. Colonies of Acetobacterium woodii which were grown in an atmosphere of H2:C02(8090)on a


medium which contained CaCO,. Acetogenic colonies are surrounded by clear zones. Magnification, x 1.2.

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358 BALCH E'I' AL. INT. J. SYST. BACTEHIOI,.

FIG. 2. (A) Phase-contrast photomicrograph of living cells of the acetogenic bacterium. Magnification,
~2,000. (B) Electron micrograph of the acetogenic bacterium showing a single, subterminal flagellum, F,
andpili-like structures, P. The micrograph was taken by F. Mayer.

traces of a compound which may have been to 95% of the fructose was converted to acetate.
succinate were detected when substrates other The generation time of the organism at 30C
than hydrogen were utilized. The results pre- was 6 h. However, no evidence was obtained for
sented in Fig. 3 show that the acetogenic orga- the formation of hydrogen during the fermen-
nism produced a homoacetic fermentation: 92 tation. The fermentor was continuously sparged

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Vor,. 27, 1977 ACETOBACTERIUM, A NEW GENUS 359
with nitrogen at a flow rate of 15 cm:'/min per
liter of medium, and the theoretical amount of
acetate was nearly formed from the fructose
used, indicating that molecular hydrogen likely
was not formed since a significant portion would
have equilibrated with the medium and would 0.6 1 II

Jr
have been scrubbed out with the nitrogen. I
Growth with HA202 was much slower. In these 0 05- I

experiments, the cell yield on the fermented $ 04-


I
I
80
fructose was 2.2 g (wet weight) per liter of me- \

03- 60
dium, and the yield on the gas mixture was 1.5.
Nutrition. The results of the nutrition studies 02- 40
(Table 2) indicate that pantothenate alone can
20
p , , ,&,
01-
replace the vitamin requirement for strain WB1.
In this experiment, the growth yield was low; I I I I
to avoid introducing variables, acetic acid was 0 20 40 60 0 20 40 60 80 100 120
not neutralized, and the gas atmosphere was not Hours
replaced. The organism could be subcultured FIG. 3. Growth of a n d production of acetic acid
continually in media which contained calcium by the acetogenic bacterium in ferrnentor cultures.
pantothenate as the only vitamin. Oxygen-free nitrogen was bubbled (15 cm"/min per
Stoichiometry of growth on Hz and C02. liter of medium) through the culture in which fructose
To determine the amount of hydrogen and car- was the substrate, a n d a n oxygen-free mixture of H2-
bon dioxide consumed as well as the amount of CO, (80:ZO) was bubbled (40 cm"/min per liter of
medium) through the fermentor from which the data
acetic acid formed by strain WBl, growth was plotted on the right were obtained. Absorbance of
followed in sealed tubes as described in Materi- samples was determined by use of a 1 -cm light path.
als and Methods. Gas consumption and acetate
formation correlated with an increase in the
TABLE1. Organic substrates tested for support of absorbancy of the culture (Fig. 4). During
growth of the acetogenic bacterium under a n growth, 6 pmol of gas was consumed per pmol
atmowhere of nitrogen a n d carbon dioxide (80:ZO) of acetate produced. The results of analyses by
Final absorbance gas chromatography agreed with equation 1. No
Organic substrate tested of broth culture" growth occurred in tubes where Nz was substi-
(at 660 nm) tuted for Hz.
Fructose" 1.12 Additional characteristics of the aceto-
Glucoseh 0.89 genic bacterium. Batches of cells for use in
rjL-Lactate (sodium)h 0.50 the determination of the G+C content of the
m,-Glycerate (sodium)" 0.35 DNA were grown on fructose as well as on Hn-
Formate (sodium)' 0.40 C o n .The buoyant density of purified DNA from
Other compounds" <o. 10 cells cultured under either condition was 1.699
" The inoculated basal medium (without added sub- g/cm", and the calculated G+C content was 39
strate) supported growth which reached an absorb- mol%. To document further the characteristics
ance <0.1. of the organism, cultures were sent to the An-
hThis substrate supported the growth of the ace- aerobe Laboratory, Virginia Polytechnic Insti-
togenic bacterium.
Cells initially grew poorly on formate, but by con-
tute (VPI) and State University, Blacksburg,
tinual subculture on this substrate, an absorbance of Va. The results of a series of standard substrate
"

0.4 was obtained at 100 mM formate. fermentations and reaction tests confirmed our
"Compounds tested which did not serve as sub- results and indicated that the organism was un-
strates for the growth of the acetogenic bacterium: like any of the bacteria in the VPI culture col-
methanol, ethanol, n-propanol, i-propanol, n-butanol, lection (L. V. Holdeman, personal communica-
i-butanol, sec-butanol, and n-pentanol; acetic, tion).
propionic, butyric, valeric, fumaric, IJ-malic, pyruvic, Additional strains of the acetogenic organism,
and succinic acids; alanine, aspartic acid, Casamino which are designated RT1 and RT2, also were
Acids, casein hydrolysate, glutamic acid, glycine, and studied; characteristics of these strains closely
serine; arabinose, cellobiose, cellulose, 2-deoxyglucose,
galactose, lactose, mannose, maltose, melezitose, pec-
resembled those of strain WB1.
tin, raffinose, rhamnose, ribose, starch, sucrose, tre- DISCUSSION
halose, xylose, mannitol, inositol, glycerol, alginic acid,
galactonolactone, galacturonic acid, gluconolactone, Although the acetogenic bacterium is unique
and glucuronic acid. in its ability to grow by the oxidation of hydro-

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360 BALCH ET AL. INT. J. SYST. BACTEIWI,.

gen and reduction of carbon dioxide to acetic 0


600- 04
acid, it appears from preliminary studies that -2
$ 500-
b
P,
the homoacetic fermentation of sugar closely 1000
resembles the fermentations carried out by
c
03 2
strains of C. thermoaceticum and C. formicoac- 4 400-$
eticum (1, 11). 2 Q 2000
We propose the establishment of a new genus, 9 3oo-To2
Acetobacterium (A. ce . to . bac . te'rium. L.n. 2 (I,

acetum vinegar; Gr.neut.n. bakterion a small 200- 3000 $


rod; M.L. neut.n. Acetobacterium vinegar rod)
for these acetogenic bacteria. The type species 4000
z1
of this genus is Acetobacterium woodii sp. nov.
(woodi . i . M.L. gen.n. woodii of Wood, named 0 40 80 120 160 200 240
for Harland G. Wood, who pioneered studies on Hours
the total synthesis of acetate from COz by bac- FI~:.4. Growth and stoichiometry of substrate uti-
teria). Until definitive evidence becomes availa- lization and acetic acid production by the acetogenic
ble, we suggest that Acetobacterium be placed bacterium in a closed, pressurized system.
in the family Propionibacteriaceae. Strains of
Acetobacterium woodii appear to be most
closely related to the genus Eubacterium, but in 7 to 10 days. Older colonies may show a slight
they differ in their ability to grow by the anaer- yellow pigmentation. Traces of a water-soluble
obic oxidation of hydrogen and the reduction of yellow pigment may be excreted into the me-
C02 to acetic acid as well as in their ability to dium. Catalase negative.
carry out only homoacetic fermentations from DNA base composition. 39 mol% G+C.
reduced substrates. A combined generic and spe- Temperature for optimal growth. 30C.
cific description follows. pH relationships. Remains viable at pH 5
Acetobacterium gen. nov. and Acetobacter- for many weeks.
ium woodii sp. nov. Physiology. Obligately anaerobic. Ferments
Morphology. Oval-shaped, short rods meas- 1 mol of fructose to 3 mol of acetate; also pro-
uring 1.0 by 2.0 pm. Cells frequently occur in duces homoacetic fermentations from glucose,
pairs. Gram positive. Highly motile by means lactate, and glycerate. May be adapted to fer-
of one or two subterminal flagella. Endospores ment formate. Oxidizes hydrogen and reduces
are absent. carbon dioxide according to the following equa-
Colony characteristics. Colonies are circu- tion: 4Hz + 2C02+ CHaCOOH + 2H20. Traces
lar and convex and grow to a diameter of 1 mm of succinate may be produced from organic sub-
strates.
TABLE2. Vitamin requirements of the acetogenic Nutrition. Grows in a defined mineral me-
bacterium when grown in a mineral medium under dium with the addition of substrates (H2-C02
a pressurized atmosphere of hydrogen and carbon or organic substrate). Pantothenate is required.
dioxide (67:33) Source. Marine and fresh-water black sedi-
Amount of Final ab- ments.
Vitamins added to basal mineral Type strain. WB1. This strain, isolated from
s ~ ~ ~
medium
liter of me- ture" (at
a marine estuary, has~ been deposited
~ ~
in the ~ f

660 nm) American Type Culture Collection (ATCC),


None 0.04 Rockville, Md., under the number 29683 and in
Biotin 20 0.06 the German Collection of Microorganisms
Folic acid 20 0.05 (DSM), Gottingen, FRG, under the number
Pyridoxine- hydrochloride 100 0.06 1030.
Riboflavin 50 0.04
Ca2+pantothenate 50 0.33 ACKNOWLEDGMENTS
Vitamin Bln 1 0.05 We thank I,. V. Holdeman and the VPI Anaerobe Labora-
p-Aminobenzoic acid 50 0.05 tory for examining a culture of Acetobacterium woodii. D N A
Thioctic acid 50 0.05 purified from Micrococcus luteus was a gift from C. I,. Hersh-
All of the above vitamins plus: berger. We thank A. M. Walfield for assistance in density
Thiamine- hydrochloride 50 gradient centrifugation and F. Mayer, Giittingen, for providing
0.30 the electron micrograph. S. Schoberth was the recipient of a
Nicotinic acid 50
fellowship from the Deutsche Forschungsgemeinschaft, and
Absorbance values, when compared to the blank R. S . Tanner is the recipient of a predoctoral fellowship from
(0.04), indicate a negligible stimulation of growth by the National Science Foundation. This work was supported
addition of vitamins other than pantothenate. by National Science Foundation grant PCM 76-02652.

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VOL. 27,1977 ACETOBACTERIUM, A NEW GENUS 361
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of Microbiology, 131 Burrill Hall, University of Illinois, Ur- 3: 208-218.
bana, IL 61801. 10. Nelson, N. 1944. A photometric adaptation of the Somo-
gyi method for the determination of glucose. J. Biol.
Chern. 153:375-380.
11. O'Brien, W. E., and L. G. Lungdahl. 1972. Fermenta-
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