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Key words: Geno me size, flow cytometry, pr opidium iod id e, Arabidops is, rice,
toma to .
Ab stract: Nuclear DNA contents of m or e than 100 important plant sp ecies were
measured by flo w cytometry of isol ated nuclei stained with propidium iodide.
A rabidopsis exhibits d ev elopmentally regulated multiploidy an d has a 2C nuclear
DNA content of 0 .30 pg (145 Mbp/1C), twice th e value u su ally cited . Th e 2C
value for ric e is on ly abo ut three times that of A rabidopsis . Tomat o has a 2C value
of ab out 2.0 p g, larger than commonly cited . Th is survey identified sever al
horticultural crop s in a variet y of families with gen omes o nly t wo or three tim es
as large as Arabidopsis; the se include several fruit tr ees (a prirot, ch erry, mango,
o ra nge , papaya, and pe ach). The small gen ome sizes of ri ce a nd th e h orti cultural
plants sho uld facilitate m ol ecular stud ies of th ese cr op s.
uclear DNA con tents of over 100 important plant species, were
co m ple m en t; CRI3C, chicken red bloo d cells; CE, chemical extractio n; FC, flow
cyt om et ry; FMD, Feulgen m icrod en sito me try; RK, reassoci ati on kin etics.
208
Nuclear DNA Content 209
800
A 8C 800 B CRBC,
4C
:8 600 :8 600
Debris
~ 400 ~ 400 4C
<J
;:l
Z 200 ~ 200
16C
O+-.--r-..........,,..........."'T"'"'"'......opI...~.......,.-.-J,
32 64 96 128 iso 192 224 256 o 32 64 96 128 160 192 224 256
Chan nel number Chann el number
i ~llC-. . . ._.
. . . .l ;
o 31 64 96 128 160 192
{""CI
224 256
i ~
0
O-o~--""''''''''''''''''''''''''''''''''1
32 64 96 l2 8 160 192 224 256 111
Cha nnel number Channel number
300 T-::,----- - - - - - - - - - ..., 500 "r."F,----------::-;:-.,----==-::-:::-1
E I
CRDC
Tomato Gl ~4()()
\ ~
Q
300
' Q;
U 200
::l
Z IOO
0 -1--0...,......,....
o 32 64 96 128 160 192 224 256
o+-__........... ~~ .... ~~
Allium cepa Onion Ama r yllida ceae 31.69,32.74 (2) 15290, 15797 3.55 (FMO, 1)
Arabidopsisthaliana Arabido psi s Cruciferae 0.30 (2) 145 0.5 (FMO, 1);
0.15 (RK, 2)
Arachis hypogam (2n=4X) Pean u t/ groundnut Leguminosae 5.83 2813 3.5 (FMO, 5)
Asparagus officinalis Asparagus Liliaceae 2.71 1308 NO
Avena sa/iva Oa ts Gra mineae 23.45 11315 26.5-27.5 (FMO, 1)
Beta vulgaris ssp. esculenia Beet / beetroot Ch enopodiaceae 1.48 714 2.5 (FMO, 1)
Beta VUlgaris ssp. sacchariiera Suga r beet Che nopodi aceae 1.57 758 2.6 (FMO, 1)
Brassicacampestris ssp. chinensis Pak choi Crucifera e 1.05 507 1.6 (FMO, 1)
Brassicacampestris ssp. oteiiera Turnip rap e Cruciferae 0.97-1.07 (6) 468-516 1.6 (FMO, 1)
Brassica hirta (=Sil1l1pisalba) White mu st ard Cruci ferae 1.02 492 1.0 (FMO,3)
Brassica napus Rapeseed Cruci fera e 2.34-2.56 (4) 1129-1235 3.2 (FMO, 1)
Brassica oleracea ssp. botrytis Ca uliflower Crucifera e 1.30-1.37 (4) 628-662 1.8 (FMD, 1)
Brassica oleracea ssp. capitata Cabbage Cruciferae 1.25 603 1.8 (FMO, 1)
Brassica oleracea ssp.gemmifera Bruss els sprouts Cruciferae 1.30 628 1.8 (FMO, 1)
Brassicaoleracea ssp. italica Broccoli Cruci ferae 1.24, 1.28 (2) 599,618 1.8 (FMO, 1)
.....
.....
Capsicum annuum Pep per / chil i Solanaceae 5.6-7.51 (7) 2702-3420 8.0- 10.8 (FMD, 5);
5.52 (FC, 7)
Carica paptrya Papa ya Caricaceae 0.77 372 NO tv
......
Cicer arieiinum Chi ck pea Leguminosae 1.53 738 1.9 (FMD, 1) tv
Citrullus vulgaris (= lanalus) Watermelon Cucurbitaceae 0.88, 0.90 (2) 425,434 NO
Citrus sinensis Ora nge Rutaceae 0.76, 0.82 (2) 367,396 NO
Crepis capillaris Crepis Composil ae 3.87 1867 4.1 (FMD, 1); 3.55
(FC,8)
Cucumis melo Ca n talo u pe Cucurbitaceae 0.94, 1.04 (2) 454, 502 1.9 (FMD, 3)
Cucumis saiious Cucumber Cucur bitaceae 0.76 367 2.1 (FMD, 1)
Cucurbila pepo Zucc hini Cucur bitaceae 1.04, 1.08 (2) 502,521 5.6 (FMD, 3)
Datura stramoniun [im son w eed Solanaceae 4.11 1983 NO
Daucus carota Carrot Umb elliEer ae 0.98 473 2.0 (FMD, 1)
Dioscorea 0.10.10. Yam Dioscor eac eae 1.15 555 NO
Diplotaxis erucoides Cruciferae 1.31 632 NO
Eruca satit/a Cru ciferae 1.16 560 NO
Glycine max (2n=4X) Soybean Leguminosae 2.31 1115 1.9 (FMD,3)
Goss ypium hirsulum (2n=4X) Co tto n Malv aceae 4.39,4.92 (2) 2118, 2374 6.1-6.5, 6.06 (FMD, 1,
6); 5.6 (FC, 6)
Helianthus annuus Sunflower Composit ae 5.95-6.61 (3) 2871-3189 4.9-9.9,7.22 (FMD, 3,
6); 3.67, 6.96
(FC, 7, 6)
Hordeum vulgare Barley Graminea e 10.10 4873 10.7-11.1 (FMD, 1)
Iporrvea balalas (2n=6X) Sw eet potato Conv olvul aceae 3.31 1597 NO
Lactucasativa Lettuce Com posita e 5.47 2639 5.32 (FC, 6);6.06 ...;;::~
(FMD,6) ::i
;;::
Lensculinaris (e esculenta} Lentil Leguminosae 8.42 4063 9.2 (FMD, 1)
Lyco persicon chsesemanii Solan aceae 1.83 883 NO ~
Lycopersicon esculenium Solan aceae 1.88-2.07 (6) 907-1000 1.48, 1.9 (Fe, 7, 6); ~
Toma to S.
2.0-5.1, 2.05 (FMD, 1, 6) ~
;:l
Lycopersicon pennellii Solan aceae 2.47-2.77 (3) 1192-1337 NO ~
;:l
Lycopersiconperut/ianum Solanaceae 2.27 1095 NO 1:l..
Malus x domestica (2n =2X) Ap p le Rosac eae 11.54-1.65 (3) 743-796 NO tTl
~
Mangifera indica Mango Ana cardia ccae 0.91 439 NO -e
~
Manihotesculen ta (=utilissima) Cassava / manioc Euph orbiaceae 1..43-1.72 (17) 690-830 NO ~
l':
....,
Medicago so. tiva (2n=4X) Alfalfa / lucern e Legu minosae 3.13 1510 3.5 (FMO, 1) nl
Medicago truncalula Leguminosae 0.94- 1.09 (6) 454-526 NO l':l
....
Me/ilotusofficina/is Sweet clover Legu minosae 2.25 1086 NO tJ
Musa sp. Banan a Musaceae 1.81 873 NO
Nicoiiana plumbaginifolia Solanaceae 4.74 2287 NO ~
Nicotiana tabacum (2n ::4X) Tobacco Solanacea e 8.75-9.63 (4) 4221-4646 7.8 (FMO, 1);9 .67 (FC, 7) n
a
1.5, 1.25 (FMO, 3, 4) ~
Oryza Iongistaminata African rice Grami neae 0.78 376
~
Oryza sativassp.Indica Rice Gramineae 0.87-0.96 (49) 419-463 1.2, 1.67, 2.1 ;:!
...,.
(FMO, 1, 4, 3)
Oryza sativassp. [aponica Rice Gram ineae 0.86-0.91 (20) 415-439 1.2, 1.55, 1.9
(FMO, 1, 4,3)
Oryza sativa ssp.[atanica Rice Gramineae 0.88 (3) 424 NO
Passiflora menspermiiolia Pas sion fruit Passifloraceae 4.54 2191 ND
Persea americana Avocado Lauraceae 1.83 883 NO
Petroselinum crispum Parsley Umbelliferae 3.96 1911 ND
Petuniahybrida Pe tunia Solanaceae 2.64 1274 3.1,3.9 (FMO, 1, 3)
Petunia parodii Solanaceae 2.53 1221 ND
Phaseolus acutiiolius Tepary bean Legurnlnosae 1.34 647 NO
Phaseolus coccineus Scarle t runn er bea n Legu minosae 1.47 709 3.5, 1.9 (FMO, 1,3)
Phaseolus lunalus Lima bean Leguminosae 1.29 622 2.5 (FMO, 1)
Phaseolus vulgaris Com mo n bean Leguminosae 1.32 637 3.7, 2.7 (FMO, 1,3)
Pisum satiuum Garden pea Leguminosae 8.18,9.11 (2) 3947,4397 9.8-10.5,9.75(FMO, 1,6);
7.72,8.55 (Fe, 7,6)
Prunus armenaica Aprico t Rosaceae 0.61 294 ND
Prunus avium Sweet Cherry Rosaceae 0.70 338 NO
Prunus avium x cera sus (2n =4X) Che rry Rosaceae 1.42 685 NO
Prunus ceras us (2n=4X) Sour cherry ' Rosaceae 1.24 599 NO
Prunus domesiica (2n=6X) Prune Rosacea e 1.83 883 NO
Prunus persica Peach Rosaceae 0.54, 0.55 (2) 262,265 NO
Pyrus communis Pear Rosaceae 1.03, 1.11 (2) 496,536 ND N
Raphanus satiuus Radish Cruciferae 1.09 526 0.9 (FMO, 3) >-'
w
N
Ricinus communis Castor bean Euphorbiaceae 0.67 323 NO >--'
Rubus idaeus ~
Raspberry Rosaceae 0.58 280 NO
S. barbed X S. spontaneum Sugarcane Gram ineae 6.12 2953 NO
Saccharumbarberi Suga rcane Crarnineae 6.54,8.54 (2) 3156,4121 NO
Saccharum afficinarum Suga rcane Gramineae 5.28-7.47 (3) 2547-3605 8.1- 8.7 (FMO, 1)
Saccharum rabustum Suga rcane Gram ineae 6.53 3151 7.7-8.6 (FMO, 1)
Saccharum sinense Suga rcane Gra mineae 8.67 4183 NO
Sesbania rostrata Leguminosae 2.46 1187 NO
Sinapis aroensis Cruciferae 0.76 367 NO
Solan um benhaultii Solanaceae 1.74 840 NO
Solanum melongena Eggpl ant Solanaceae 2.28,2.48 (2) 1100, 1197 2.33 (FC, 7)
Sola num tuberosum (2n =4X) Pota to Solana ceae 3.31-3.86 (3) 1597-1862 4.2 (FMO, 1)
Sorghum bicolor Sorghum Grami neae 1.55, 1.60 (2) 748,772 1.56-1.74 (FMO, 5);1.74
(FC,6)
Spinaciaoleracea Spi nach Chenopodiaceae 2.05 989 1.9 (FMO, 3)
Trifolium pratense Red dover Leguminosae 0.97 468 NO
Trifolium repens White clover Leguminosae 2.07 999 NO
TripsaCLi m dactvloides Gama grass Gramineae 7.73 3730 NO
Trit icum aesiioum ( 2n~X) Wheat Grami neae 33.09 15966 34.6 (FMO, 1, 6); 36.11
(Fe,6)
Triticum monococcu m Grami neae 11.92 5751 12.4-13.4 (FMO, 1)
Tulipa sp, Garden tulip Liliaceae 51.2,63 .6 (2) 24704,30687 72.0 per cell (CE, 1) :.
Vanilla planifalia Vanilla Or chidaceae 15.90 7672 NO ....
>::
Vigna mungo Black gram I urud Leguminosae I.l9 574 NO ~
>::
Vigna radiata Mung bean Leguminosae 1.20 (2) 579 I.l (FMO, 3)
Vigna unguiculala ( = sinensis) Legum inosae 1.27
~
Cowpea 613 NO
Vitis oini[era Grape Vitaceae 1.00 483 NO E
.....
~
X Ciiroio nunella mitis Ca lamondin orange Rutaceae 0.80 386 NO i::l
;:1
Zea diplope rennis Gra mineae 3.57 1723 5.28 (FMO, 5) i::l
lea mays Com Gra mineae 4.75-5.63 (6) 2292-2716 4.42-6.75 (FMO, 5);5 .99 ;:1
l':>.
(Fe,7) t'"rl
....l::l
<i>
Nuclear DNA Content 215
Notes to Table I.
'Value for ea ch cu ltivar was determined by tw o or more me a sur ement s of at lea st
2000 nuclei. N, number o f cu ltivars or v arietie s examined .
bl p icogra m (pg ) = 965 million base p airs (Mbp ) (1).
<FMD, Feulgen m icrod en sit om etry; FC, flow cytometry; ND, not d et ermined ;
RK, reassociat ion kin et ics; CE, chemical ex tractio n; Ref., referen ce : 1, Bennett
a nd Smi th (1 976); 2, Leurwiler et a L (1984); 3, Bennett e t al. (1982); 4, Iyengar
an d Sen (1 978); 5, Laurie and Smith (1982); 6, Micha el son et a l. (1991). 7,
Gal br aith et aL (1983). 8, Galbraith (1990).
Table II. DNA con ten t of unreplicated haploid genome of various plants
arranged according to genome size.
DNA DNA
Pl ant species Mbp/l C Plant species Mb p/lC
of nuclei from Arabidopsis, rice, tomato and CRBC is shown in Fig. 1F; the
peak for rice G, nuclei falls between the 4C and 8C nuclear peaks of
Arabidopsis; the tomato G 1 peak falls between the 8C and CRBC peaks.
Comparisons of our nuclear DNA values to those from other methods
and / or studies are included in Table 1. For most plant species, including
ones with diverse genome sizes (e.g. mung bean, sorghum, com, pea,
barley, oats, onion, wheat), our results from flow cytometry are in good
agr eement with those obtained in th e laboratory of M. D. Bennett by
Feulgen microdensitornetry (although not with some of the values he
compiled from earlier work elsewhere). The Arabidopsis values esti
mated by reassociation kinetics (0.0725 pg/l0 and by Feulgen micro
densitometry (0.2 pg/1C) are substantially different; our results (0.15
pg/10 are intermediate b etween the two but closer to the latter (Table
I). Our values for rice (0.45/10 are somewhat lower than those from
microdensitometry (0.6 pg /1C or more). The widely used valueof 0.74
pg/1C for tomato, obtained by flow cytometry (Galbraith et al., 1983), is
about25 % lower than ours. This may be due to their use of mithramycin,
a fluorescent stain that preferentially binds to G-C nucleotide pairs.
Because the tomato genome has a G-C content of only 37% (Messeguer
et al., 1991), staining with mithrarnycin is likely to underestimate actual
genome size . Variation in nuclear DNA contents of different cultivars
may also have contributed to the differences seen.
The flow cytometry protocol used in our study (Arumuganathanand
Earle, 1991) should permit easy determination of nuclear DNA values for
additional plants not listed in Table lor previously published reports.
We would be glad to learn of such results for compilation of a more
complete table.
218 Arumuganathan and Earle
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