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To cite this article: Hans P. Lthi & Trygve Helgaker (2017) A tribute to Jan Erik Almlf, Molecular
Physics, 115:17-18, 2033-2042, DOI: 10.1080/00268976.2017.1293305
Article views: 64
MQM 2016
KEYWORDS
Computational quantum
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chemistry; electronic
structure theory; molecular
properties; direct methods;
high performance
computing; chemical
modelling
bibliography.
2.2. Hitting the I/O wall and a change of paradigm
2. The scientist
While CPU power was steadily increasing, it became
apparent that input/output (I/O) would remain a bottle-
2.1. The early days: computation as an emerging
neck in ab initio calculations. Thus, when trying to repro-
tool in chemistry
duce the experimental structure of ferrocene and other
In quantum chemical research, a considerable fraction metallocenes using the HartreeFock method, the I/O
of the effort is devoted to improving the computational became the ultimate obstacle. In an attempt to harness
strategy. The work in this field can basically be charac- every single MByte of scratch space available, including
terised as aiming at a single goal: how can larger systems those on the system disk, to store the 11 million, two-
be made accessible to increasingly sophisticated meth- electron integrals on the University of Oslo CDC Cyber
ods? is the opening statement in an article contributed computer, a severe system crash ensued. Denied further
by Jan Almlf and Peter R. Taylor to the monograph access to the machine, the team was forced to reconsider
Advanced Theories and Computational Approaches to the situation [7].
the Electronic Structure of Molecules, edited by Clif- Indeed, inspired by a comment made by Enrico
ford E. Dykstra and published by the D. Reidel Pub- Clementi, his host at the San Jose IBM Research Lab-
lishing Company in 1984 [5]. Born into the world of oratory, Jan Almlf and co-workers Knut Fgri and
third-generation computers, with the ambition to explore Knut Korsell were at the time developing a prototype
chemistry on the basis of quantum-chemical methods, HartreeFock code that would build the Fock matrix
Jan Almlf recognised the tremendous potential of cur- from two-electron integrals as they were evaluated, avoid-
rent and future computing machineries early on. How- ing any external storage [8]. Running on a departmen-
ever, given the size and the complexity of the chemical tal Norwegian-built Norsk Data mini-computer (ND500)
problems that interested him, he also understood that, with a powerful CPU but limited I/O capabilities, the
in order to make these systems accessible to an increas- code needed to recompute the integrals in every SCF iter-
ingly sophisticated computational treatment, a consider- ation, putting the entire workload onto the CPU. Porting
able effort would have to be spent on implementation of a the code, later named Direct Self Consistent Optimiza-
method that is, mapping it on a given compute resource tion (DISCO) on the IBM 3033 main-frame computer of
(CPU, memory, external storage). the University of Zrich, it became possible to perform
One of Almlf s early papers as a single author, pub- HartreeFock calculations on ferrocene to the basis-set
lished in 1974 [6], reports the first ab initio calculation limit. In the largest computations, the wave function was
on the molecular and electronic structure of porphine expanded by more than 500 contracted basis functions
(Figure 2), a topic he would pursue throughout his [9], breaking the barrier of 255 functions set by eight-bit
career. The focus in his 1974 article is on the position integral addressing.
of the inner hydrogen atoms, with a comparison of The direct SCF method was a breakthrough an egg
computed N-H vibrational frequencies and computed of Columbus, marking the entry into a new paradigm
ionisation potentials with experiment. Regarding the and making new problems amenable to ab initio studies.
MOLECULAR PHYSICS 2035
Figure . The siren call of real chemistry: looking at porphin, the (unsubstituted) parent structure of all porphyrins.
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storage, showed that the CPU time for the MP2 calcula-
tion is dominated by the integral evaluation. The authors
concluded that if the resources allow a direct SCF calcu-
lation for a given system, then the second-order energy
can be obtained for an additional fraction of the cost.
Figure . Per Siegbahn, Jan Almlf and Ulf Wahlgren at their hosts (Bjrn Roos (leftmost)) cottage in Smedjebacken near Lund around
.
leading to transformed orbitals i (t) = (0)exp (i t/2). methods introduced by Roos, Siegbahn and co-workers
The resulting
Laplace-transformed 2 energy expression [44,45]. The most notable contribution of the Oslo group
E (2) = 0 i j,ab a(t )b(t )i(t ) j(t ) dt becomes embar- was to the NewtonRaphson formulation of the method
rassingly simple to parallelise. The numerical integration [46], allowing to reach convergence faster, also for excited
can be efficiently and robustly calculated using standard state calculations. The CASSCF method was applied to
numerical quadrature schemes. explore the full potential surfaces of small molecules with
Almlf pointed out that much of the significance of a large number of valence states within a comparatively
the above lies in the fact that a canonical representa- narrow energy range (such as BO), highly polar species
tion [of the molecular orbitals] is no longer needed, (such as LiB) [4753] or chemical reactions [54,55].
which leaves some additional flexibility in defining dif- In the 1990s, Jan Almlf s friendship with Odd
ferent types of orbital rotations for computational conve- Gropen (19412005) at the University of Troms(now
nience. Here, computational convenience implies orbital the Arctic University of Norway) brought him back
localisation to reduce the orbital space and cost of inte- to relativistic quantum chemistry, after initial work in
gral transformation. Together with Marco Hser [39] the field with Knut Fgri and Hans H. Grelland at
and PhD-student Angela K. Wilson [40], he showed that the University of Oslo in the early 1980s. With Odd
the quadrature error can be controlled and that differ- Gropen, he co-authored six publications on relativ-
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ent localisation methods can be employed to increase the ity [5661]. Much of the focus of this research was
sparsity of the integral arrays, thus substantially reduc- the accurate evaluation of spinorbit coupling in PdH
ing the memory storage requirements. Today, the Laplace (needed for correct state ordering) using two- and four-
transform method is his most frequently cited work. component multi-reference configuration interaction
Computational performance and controllable trade- (CI) methods. Today, the annual AlmlfGropen lectures
offs between speed and accuracy are also the focus of one (http://www.ctcc.no/events/almlof-gropen-lecture) hon-
of Almlf s last scientific ventures: the separate calcula- our the memory of two central scientists in quantum-
tion of Coulomb and exchange contributions. Inspired chemical research in Norway.
by the quest for linear scaling in the DFT community,
the evaluation of the Coulomb and exchange matrices
was decoupled, thereby providing the freedom to pursue
2.7. Challenges from real chemistry
different specialised algorithms for the evaluation of each.
Together with his students Eric Schwegler and Matt Chal- Jan Almlf did not have a specific chemical agenda
lacombe, he developed a method for the fast construction rather, his interest in chemistry was focused on the under-
of the Coulomb matrix [41,42]. Using a combination of standing of electronic structure and molecular proper-
multipole expansion and explicit integral evaluation, the ties at large. Still, ferrocene (Figure 6) as well as por-
authors calculated the Coulomb contributions to the Fock phins and porphyrins (with or without transition-metal
matrix at sub-quadratic scaling for 560 membered water centres) received much attention throughout his entire
clusters and up to 16-membered polyglycine -helices. career indeed, it was a study of ferrocene that gave the
The follow-up article on the linearly scaling computa- impetus to the development of the direct SCF method.
tion of the HartreeFock exchange matrix, published in From a chemical perspective, being able to reach the one-
1996 [43], does not carry Jan Almlf s name; Eric Schwe- particle basis-set limit gave proof that the HartreeFock
gler and Matt Challacome dedicate the extension of this method fails to reproduce the molecular structure of fer-
research to his memory. rocene and other transition-metal compounds [62]. In
the case of ferrocene, the metalligand bond length at the
HartreeFock limit was 1.89 A, in poor agreement with
2.6. Method development and molecular property
the (unchallenged) experimental value of 1.65 A. In the
evaluation
case of iron pentacarbonyl (Fe(CO)5 ), the axial iron to
As a young professor in Oslo, next to his focus on carbon bond length is again much longer than the exper-
faster and larger calculations, Jan Almlf also had a imental value (2.05 vs. 1.81 A), whereas the equatorial
strong ambition towards more sophisticated methods. bond distance is only marginally longer (1.88 vs. 1.83 A)
Together with his colleagues Roos and Siegbahn (Figure [63].
5), his co-workers Anders Heiberg and Peter Ruoff, along The failure of the HartreeFock model to describe
with his frequent visitors Peter R. Taylor (NASA Ames) bonding in transition-metal compounds caused major
and Alexander Nemukhin (Moscow State University), irritation in the community. On the other hand, early
he further developed and applied multi-configuration DFT calculations did not encounter this problem to the
SCF, in particular CASSCF (complete active space SCF) same degree [6466] on the contrary, the success of DFT
MOLECULAR PHYSICS 2039
Table . The most frequently cited articles of Jan Almlfs. Even today, years after he passed away, his work is being cited more
than times a year.
Title Authors Source Year Ref. Cit.
Atomic Natural Orbitals and the Calculation of Atomic and Molecular Almlf, Taylor JCP []
Properties
Integral Approximations for LCAO-SCF Calculations Vahtras, Almlf, Feyereisen CPL []
General Methods for Geometry and Wave-Function Optimization Fischer, Almlf JCP []
The Complete Active Space SCF (CASSCF) Method in a Siegbahn, Almlf, Heiberg, Roos JCP []
Newton-Raphson Formulations with Application to the HNO Molecule
Principles for a Direct SCF Approach to LCAO-MO ab initio Calculations Almlf, Faegri, Korsell JCC []
Avoiding the Integral Storage Bottleneck in LCAO Calculations of Sb, Almlf CPL []
Electron Correlation
A Theoretical Study of Multidimensional Nuclear Tunneling in Shida, Barbara, Almlf JCP []
Malonaldehyde
Ab initio Studies on the Thermodynamic Stability of the Icosahedral Lthi, Almlf CPL []
C- Molecule Buckminsterfullerene
Elimination of Energy Denominators in Moller-Plesset Almlf CPL []
Perturbation-Theory by a Laplace Transform Approach
The Equilibrium Geometry of C as Predicted by nd-Order (MP) Hser, Almlf, Scuseria CPL []
Perturbation-Theory
Publications
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with transition-metal systems opened the doors to accep- of the machine, Almlf and co-workers came to the con-
tance of the method in chemistry. clusion that comparison of the energy per carbon atom
At the time, it was clear that electron correlation would computed for C54 and Buckminsterfullerene shows that
need to be addressed in calculations on transition-metal the soccerball shaped C60 molecule is indeed more sta-
compounds, but it would take years before the problem ble than the single-layer sheet of graphite [71]. Later, this
was finally solved. While early multiconfiguration self claim was confirmed by computations on much larger
consistent field (MCSCF) and 18-electron CI calculations sheets of graphite (with up to 150 carbon atoms) and by
on ferrocene clearly showed an improvement, the metal comparison to diamond-like structures (with up to 84
ligand distance was still 0.07 A longer than the experi- carbon atoms) [10].
mental reference. Correlating the entire valence space of The fact that Buckminsterfullerene may well be ther-
66 electron was at the time difficult and would call for modynamically stable was an encouraging message to its
size-consistent methods. Early MP2 calculations includ- discoverers (personal communication). Later, after the
ing the entire valence space resulted in too short metal new form of elemental carbon was isolated and charac-
ligand distances. In a 1991 article, Almlf and his stu- terised by Krtschmer, Huffmann and co-workers [72],
dent Changyok Park, using modified coupled-pair func- the calculations of the equilibrium geometry of C60 and
tional calculations with dispersion corrections derived derivatives reported by Almlf, Hser and Scuseria [73],
from accompanying MP2 calculations, correctly repro- and by Scuseria [74], marked some of the largest MP2
duced the molecular structure of ferrocene, highlight- calculations performed to that date (well beyond 1000
ing the importance of dispersion interactions [68]. In contracted basis functions). These calculations, involving
1996, a Coupled Cluster calculation with full treatment codes other than DISCO, showed the acceptance and the
of Single and Double excitations, plus perturbative cor- power of the integral-direct methods.
rection for Triple excitations [CCSD(T)] study of Koch, Trained as a crystallographer, hydrogen bonds and
Jrgensen and Helgaker agreed fully with experiment, hydrogen (proton) transfer were phenomena that fas-
demonstrating that ferrocene is not a multi-reference cinated Jan Almlf since the early days of his career. In
system [69]. the 1970s, he published nearly 20 papers that carry the
The controversy regarding the existence of Buckmin- term hydrogen in their title, some of which focus of por-
sterfullerene, proposed in 1985 by Richard Smalley and phyins or their building blocks. In the 1990s, with tools
co-workers [70], triggered Jan Almlf s interest. Based on much more advanced than the semi-empirical methods
preliminary HartreeFock calculations performed on the applied in the early days, an extensive collaboration with
MSI Cray-2 computer, using a version of the direct SCF colleagues of the University of Minnesota faculty, Paul G.
code that would keep part of the two-electron integrals in Gassman and Abhik Ghosh, on the electronic structure of
the 256 million double precision word central memory porphyrins and their response to peripheral substituents
2040 H. P. LTHI AND T. HELGAKER
Don Truhlar [89]. Don Truhlar and Jan Almlf also were This article is dedicated to Elisabeth Almlf. First as graduate
students, then as post-docs and later as frequent visitors, we
an important and well-heard voice for supercomputing in
both enjoyed the great hospitality of the Almlf family.
chemistry [90,91].
Disclosure statement
3. Scientific legacy No potential conflict of interest was reported by the authors.
[13] J. Douday, Y. Ellinger, R. Subra, and B. Levy, J. Chem. [47] A.V. Nemukhin, J. Almlf, and A. Heiberg, Chem. Phys.
Phys. 72, 1452 (1980). 57(12), 197 (1981).
[14] G. Bacskay, Chem. Phys. 61, 385 (1981). [48] J. Almlf, A.V. Nemukhin, and A. Heiberg, Int. J. Quan-
[15] M. Head-Gordon and J.A. Pople, J. Phys. Chem. 92, 3063 tum Chem. 20(3), 655 (1981).
(1988). [49] A.V. Nemukhin, J. Almlf, and A. Heiberg, Theor. Chim.
[16] T. Fischer and J. Almlf, J. Phys. Chem. 96(24), 9768 Acta 59(1), 9 (1981).
(1992). [50] H. Sellers, J. Boggs, A.V. Nemukhin, and J. Almlf, J. Mol.
[17] P. Pulay, Chem. Phys. Lett. 73(2), 393398 (1980). Struct.: THEOCHEM 85(12), 195 (1981).
DOI:10.1016/0009-2614(80)80396-4. [51] A.V. Nemukhin, J. Almlf, and A. Heiberg, Chem. Phys.
[18] P. Pulay, J. Comput. Chem. 3(4), 556560 (1982). Lett. 76(3), 601 (1980).
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[19] P. Csszr and P. Pulay, J. Mol. Struct. 31, 114 (1984). THEOCHEM 253(C), 101 (1992).
[20] M. Head-Gordon, J.A. Pople, and M.J Frisch, Chem. [53] A. Heiberg, J. Almlf, and A.V. Nemukhin, Chem. Phys.
Phys. Lett. 153(6), 503 (1988). Lett. 88(4), 399 (1982).
[21] M.J Frisch, M. Head-Gordon, H.B. Schlegel, K. [54] P. Ruoff, S. Sb, and J. Almlf, Chem. Phys. Lett. 83(3),
Raghavachari, J. Binkley, C. Gonzalez, D. Defrees, 549 (1981).
D. Fox, R. Whiteside, R. Seeger, C. Melius, J. Baker, L. [55] P. Ruoff, J. Almlf, and S. Sb, Chem. Phys. Lett. 72(3),
Kahn, J. Stewart, E. Fluder, S. Tipiol, and J.A. Pople, 489 (1980).
GAUSSIAN88 (Gaussian Inc., Pittsburg, PA, 1988). [56] O. Gropen and J. Almlf, Chem. Phys. Lett. 191(34), 306
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[78] J. Almlf, T. Fischer, P.G. Gassman, A. Ghosh, and M. [85] N. Shida, J. Almlf, and P.F. Barbara, J. Phys. Chem.
Hser, J. Phys. Chem. 97(42), 10964 (1993). 95(25), 10457 (1991).
[79] P.G. Gassman, A. Ghosh, and J. Almlf, J. Am. Chem. Soc. [86] N. Shida, P.F. Barbara, and J. Almlf, J. Chem. Phys. 94(5),
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[80] A. Ghosh, J. Almlf, and P.G. Gassman, Chem. Phys. Lett. [87] N. Shida, P.F. Barbara, and J. Almlf, J. Chem. Phys. 91(7),
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(1993). 5 (1988).
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