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The brain is the central organ of the bodys response to and perception of stress. Both the juvenile and
the adult brain show a significant capacity for lasting physiological, structural and behavioral plasticity as
a consequence of stress exposure. The hypothesis that epigenetic mechanisms might lie behind the lasting
effects of stress upon the brain has proven a fruitful one. In this review, we examine the growing literature
showing that stress has a direct impact on epigenetic marks at all life history stages thus far examined
and how, in turn, epigenetic mechanisms play a role in altering stress responsiveness, anxiety and brain
of
plasticity across the lifespan and beyond to succeeding generations. In addition, we will examine our own
recent findings that stress interacts with the epigenome to regulate the expression of transposable
elements in a regionally specific fashion, a finding with significant implications for a portion of the genome
which is tenfold larger than that occupied by the genes themselves.
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Keywords: adolescence n adulthood n aging n DNA methylation n early life n histone Richard G Hunter*1,2 &
modification n ncRNA Bruce S McEwen1
1
Harold & Margaret Milliken Hatch
Stressful experiences occur across the lifespan stimulation [7] , intense learning [8] , learning Laboratory of Neuroendocrinology,
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The Rockefeller University,
and have lasting effects on the brain, body and and practicing of motor skills [9] , and acute and 1230 York Ave., New York, NY 10065,
behavior [1] . Stress is a contributor to a variety chronic stressors [4] . Circulating hormones play USA
2
Department of Psychology, University
of disorders, including anxiety and mood dis- a role along with endogenous neurotransmitters of Massachusetts, Boston,
orders, but also diseases like heart disease and and trophic factors [4] . 100Morrissey Blvd, Boston, MA 02125,
USA
metabolic syndrome [2] . Stress also has the capac- In the hippocampus and medial prefrontal *Author for correspondence:
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ity to induce brain plasticity in a variety of ways, cortex, chronic stress causes dendrites of neu- richard.hunter@umb.edu
including neurogenesis, and the structure of rons to shrink and become shorter and less
neurons in stress-sensitive brain regions like the branched, with an accompanying reduction in
hippocampus, amygdala and prefrontal cortex synaptic input [10,11] . This reduces capabilities for
[3] . Given the potential of stress to alter physiol- nuanced cognitive function, memory and self-
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ogy and behavior in a lasting way, particularly in regulation. Glucocorticoids of the adrenal cortex
a terminally differentiated tissue like the brain, and excitatory amino acid transmitters in those
many researchers made the logical conclusion brain regions participate in the depolymerization
that the mechanisms behind the persistence of of the cytoskeleton and shrinkage of dendrites,
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such stress-induced alterations might be epigen- by a process that is largely reversible at the end
etic in nature. This review will describe the work of stress, at least in the young adult brain [4,10] .
that has begun to support this hypothesis, and With aging, there is some loss of resilience that
examine how stress and epigenetics interact in is shrinkage of dendrites occurs, but recovery is
the brain across the lifespan and across genera- impaired [12] . In contrast to hippocampus and
tions (see Table1 and Figure 1 for a schema of the the medial prefrontal cortex, the basolateral
interactions of brain and behavioral plasticity amygdala and orbitofrontal cortex respond to
with epigenetic actors and stress). the same chronic stress by expanding dendrites
and increasing synaptic input, which leads to
Stress & brain plasticity increased anxiety, vigilance and aggressiveness
The brain possesses a life-long capacity for [13,14] . Early-life events also affect how these
reversible, structural plasticity, which includes brain regions develop, as will be discussed below.
turnover of synaptic connections, expansion Stress-induced changes in brain regions in
and contraction of dendritic trees and a lim- the animal models discussed above are mir-
ited amount of neurogenesis, particularly in rored by findings for the human brain that
the dentate gyrus of the hippocampus [4] . This include shrinkage of the hippocampus in pro-
plasticity can be seen as a result of an enriched longed major depression and Cushings disease,
environment [5] , regular exercise [6] , sensory as well as in post-traumatic stress disorder part of
10.2217/EPI.13.8 2013 Future Medicine Ltd Epigenomics (2013) 5(2), 1xxx ISSN 1750-1911 1
Review Hunter & McEwen
of
? ? ?
Adult acute stress & fear learning
Reelin, PP1 [122] H3Ac [121] , H3S10p-K14Ac [131] Retrotransposon RNA [155]
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BDNF [123]
DNMT 3a,b gene expression H3K9me3 miR-18, 24a effect GR [158,159]
[122] H3K27me3 [152]
DNMT inhibition impairs learning H3K4me, H3K27me [153] mir34c [161]
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HDAC inhibition improves
learning
Adult chronic stress
DNMT3a gene expression [149] Altered H3K9/K27 methylation miR-186, 709 region-specific
[149] changes [163]
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CRH [148] H3K27me3 (social defeat) [143] miR-29bc, 212, 410, 708
chronic sleep deprivation [164]
miR-22, 99a, 137, 2172, let7e
[164]
Aging stress
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? ? ?
DNA methylation changes refer to gene promoters or enhancers showing changes in methylcytosine levels, or in
expression of DNA methyltransferases (DNMT). Histone modifications refer to global changes in a particular histone mark
in a part of the brain. The column for ncRNA refers to changes observed in the levels of various ncRNAs such as miRNAs
(e.g.,miR, let) or transcripts from transposable elements.
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(PTSD) and Type2 diabetes [15] . In PTSD, a enlarge the hippocampus within a time frame
smaller hippocampus, possibly a reflection of of 612 months [6,15] .
low self-esteem [16] , is recognized as both a risk The human brain appears not only receptive
factor for PTSD, as well as a target of chronic to favorable physical stimuli, but also to support-
stress associated with PTSD [17] . There is also a ive relations and meaningful work throughout
smaller hippocampus reported in chronic jet lag life. Structural brain changes have been asso-
[18] , as well as after a 20-year history of chronic ciated with successful cognitivebehavioral
perceived stress, and also with increased levels therapy [19,20] , and it has been suggested that
of systemic inflammation, as well as a lack of psychotherapy can be considered an epigenetic
exercise. The amygdala is more active in anxiety intervention, alongside drug therapy [21] .
disorders and depression, while the prefrontal The health of a persons brain is not only
cortex becomes less efficient with lack of exer- important for effective processing of inputs
cise and also with higher levels of perceived from the external environment, it also controls
stress. Regular moderate exercise has been adjustments of the body engendered by behav-
shown to improve prefrontal cortical blood ioral states like waking, sleeping, lying, standing
flow and function in decision making and also and exercising, and does so via the bidirectional
Development
Stress
St
Histone
modification
DNA
methylation
Control
ncRNA
of
Translation,
mRNA stability Subordinate
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Figure 1. The brain is the principal perceiver of stress, and it in turn encodes stressful
experience epigenetically. Epigenetic changes alter brain function and brain plasticity, these in
turn alter behavior and cognition. The developmental period affects the brainenvironment
interaction at all levels.
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Adapted from [202] .
communication between the neuroendocrine, stress of the mother can impair features of nor-
autonomic, immune and metabolic systems and mal brain development [26] , and that prolonged
the brain [10,22] . These adjustments in the body separation of infant from mother also impairs
promote adaptive activities, such as locomotion, other aspects of brain development and function
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and promote coping with aversive situations and [2729] . On the positive side, good maternal care
discrete stimuli, such as noise, crowding, hunger, and consistency of that care is a powerful deter-
excessive heat or cold, and other threats to the minant of life-long patterns of reduced anxiety
persons integrity and safety. Therefore, changes and efficient stress reactivity, as well as social
in the neural architecture of key brain regions and cognitive development [3032] . Moreover, in
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will affect how the person handles daily experi- rodents, there are transgenerational effects that
ences, so as to either increase or moderate how a appear to be behaviorally transmitted by the
variety of experiences affect the rest of the body mother to the female offspring [33] , and involve
and ultimately, the fate of the individual. The epigenetic modifications of glucocorticoid recep-
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foundations of these interactions are established tors, among other genes [34] . In contrast, incon-
early in life. sistent maternal care and maternal anxiety, for
While the focus of this review is upon the example, from food insecurity, produce anxiety
interaction of developmental history with stress, in offspring and appear to contribute to metabolic
brain plasticity and epigenetics, it is important to syndrome and predisposition to diabetes, which
note that biological sex has a significant influence itself has adverse effects on the brain [35,36] . Thus,
on all of these phenomena. Epigenetic factors, the behavioral and physiological consequences
in turn, play a role in the development of sex- of early-life abuse and neglect are profound, and
specific brain structural and functional dimor- the epigenetic concept of behavioral transmission
phism [2325] . This is of particular importance of abuse and its effects on human brain func-
to our translational understanding of these sub- tion are being explored at the level of epigenetic
jects, given the substantial sex bias observed in a regulation of gene expression[37] .
number of brain disorders from autism to anxiety During recent decades, a number of studies
disorders. have documented that early-life adversity also
becomes bodily embedded in human fetuses
Early-life experiences become and children, with major implications for health
biologically embedded throughout the lifespan (for example, see refer-
Animal models have taught us that prenatal ences[38,39]). Chronic dysregulation of adaptive
systems (allostatic overload), involving epigen- the stress axis and brain plasticity. For example,
etic mechanisms, shapes the developing brain more intense interventions, such as maternal
and bodys biological vulnerability to disease, as separation (MS) have a sensitizing impact on
well as its responsiveness to potential interven- the stress axis, while less severe interventions,
tions [22,40] . Of particular relevance for children like neonatal handling or maternal exercise, can
are experiences of abuse and neglect [41] . On the promote increased resilience to stress in later life
physiological level, adverse childhood experi- [52,53] .
ences are associated with dysregulated cardiovas-
cular, metabolic and immunological function, Prenatal stress
which in turn feed into numerous systemic and Stress and corticosteroid exposure during pre-
behavioral disease conditions [41] . Chaos in the natal life also have the capacity to alter stress
home and inconsistent parenting impairs brain responses, behavior and brain function in later
development, and this can lead to disturbed cog- life [1,54,55] . Prenatal stress or glucocorticoid
nitive function, instable mood, low self-esteem treatment produce lasting behavioral changes
and numerous unhealthy activities, including across the lifespan, including learning deficits
of
overeating, substance abuse, sexual acting-out and increased depressive and anxious behavior
and other forms of legal or illegal risk-taking [42] . [56,57] . These effects are mediated in part by
For example, a 10-year history of a child grow- their effects on stress-responsive brain regions
ing up in a home where the mother has chronic like the hippocampus, amygdala and prefron-
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depression is associated with the child having tal cortex, and include reduced dendritic spine
a larger amygdala [43] . Furthermore, low self- density and lower levels of hippocampal neu-
esteem and locus of control is associated with rogenesis [5861] . As with stressors at other life
a smaller hippocampus and a lesser ability to stages, stress intensity influences the outcome
turn off the cortisol stress response [16] . Children for the animal in later life. More severe stress-
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growing up without adequate verbal stimulation ors produce exaggerated stress-evoked release of
and in chaotic, unstable home environments corticosterone and impairments in hippocampal
are vulnerable to impaired cognitive function, function [6163] , while milder exposures produce
increased systemic inflammation, cardiovascular improved resilience [64,65] .
disease, substance abuse, antisocial behavior and A number of recent studies have shown that
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mental stressors in early life has lasting effects on hypomethylation of the CRH promoter in the
stress reactivity and hippocampal plasticity that hypothalamus and central amygdala of adult
persist into adulthood. In humans, separation male mice, but not females. These differential
from both parents during early life can have a responses correlate with the expression of a
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of
observed in this model are consistent with those Chromatin immunoprecipitation of NGFI-A in
observed in humans suffering from schizophre- the hippocampus of 6-day-old pups showed that
niaa disorder in which maternal stress and binding to the 17 promoter was lower in low
gestational insults have a strong influence [72,73] . LG-ABN pups than in high LG-ABN, although
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Neonatal handling can also reduce the long-term total NGFI-A protein levels remained the same
physiological and behavioral consequences of across groups. Low LG-ABN pups also showed
prenatal stress [74] . These results suggest that lower levels of histone acetylation at the 17 pro-
either pharmacological or structured behavioral moter than high LG-ABN. HDAC inhibitors are
interventions in early life (e.g.,[75]) could have capable of both increasing histone acetylation
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substantial translational utility in ameliorating levels and reducing levels of DNA methylation
the effects of prenatal stressors. [83] , so Weaver used hippocampal infusions of
the HDAC inhibitor trichostatin A in adult rats
Postnatal stress to successfully reverse both the reduction in hip-
The best-established model for the epigenetic pocampal GR and the increased stress reactivity
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impact of early-life adversity is that based on found in low LG-ABN offspring [82,84] . This was
natural variations in maternal care in rodent the first demonstration that a transgenerational
mothers. Michael Meaney and collaborators epigenetic change was reversible with a phar-
have established that rodent mothers, which macological intervention, a finding with obvi-
exhibit high or low levels of arched back nurs- ous implications for human mental disorders
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ing (ABN) and maternal licking and grooming associated with childhood abuse or neglect.
of pups (LG), produce offspring with differing The human equivalent of the rodent 17 pro-
stress-related behavior and HPA reactivity in moter is the 1-F promoter [85] , and it too has been
adulthood, mediated in part by higher levels of shown to be hypermethylated in suicides with a
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hippocampal GR and lower hypothalamic CRH history of childhood abuse [86] ; a more recent
in the offspring of high LG-ABN mothers [7678] . study demonstrated that these effects extended
At the level of synaptic plasticity and learning, to the expression and methylation of the 1-B,
low LG-ABN rearing produces shorter dendritic 1-C and 1-H promoters as well [87] . It should be
arbors and lower spine density in the hippo added that these findings are complex (1-H is
campus, but actually produces improved learn- hypermethylated but the transcript is increased),
ing under stressful conditions [79,80] , a finding and that there are now a small body of stud-
consistent with the adaptive calibration model ies (e.g.,[88]) that suggest simple connections
of stress responsivity [81] . Most remarkably, these between GR methylation status and mental
effects were epigenetic in the strict sense in that disorders that may prove elusive. Childhood
both the variations in stress reactivity and mater- adversity has also been shown to produce hyper-
nal behavior were transmitted across multiple methylation of the GR promoter in leukocytes
generations. from normal adults, and this result was found
The mechanism by which these transgenera- to correlate with a reduced cortisol response to
tional effects occurred was outlined in detail in a dexamethasone CRH challenge [89] . Another
a later paper produced by the Meaney group in recent study using a genome-wide approach
collaboration with the Szyf laboratory [82] . They found that a history of early-life adversity cor-
showed that the adult offspring of low LG-ABN related with differential DNA methylation at
362 separate promoters, and that this group was due to increased adrenocorticotrophin release in
enriched for genes involved in neuronal plasticity response to stress [100] , which is in turn under the
[90] , further establishing that early-life adversity control of CRH and AVP secreted from the para-
in rodents and man has lasting epigenetic effects ventricular nucleus of the hypothalamus. Mur-
on physiology and behavior. gatroyd etal. examined paraventricular nucleus
While the LG-ABN is the best-known model expression of these two genes in MS animals and
in which transgenerational epigenetic effects on found that MS increased AVP, but not CRH
the stress axis are observed, such effects have expression. The change in AVP expression was
also been described in other model systems. For associated with DNA hypomethylation in an
instance, prenatal treatment with the synthetic enhancer region of the AVP gene bound by the
glucocorticoid, betamethasone, produces sub- methyl CpG-binding domain protein MeCP2
stantial alterations in the global DNA methyla- [101] . MeCP2 is involved in the pathology of
tion status of both fetal organs and the placenta. Rett syndrome [102] , and has been shown to be
Betamethasone also changed the expression involved in the regulation of stress and plasticity
levels of a number of epigenetically significant genes such as BDNF [103,104] . A similar model,
of
genes, notably DNMT3b and Crebbp [91] . Inter- using stressed and abusive dams, caused a reduc-
estingly, some cases of transgenerational epigen- tion in the expression of BDNF in the prefron-
etic effects in animal models appear to be trans- tal cortex of the pups and this reduction was
mitted paternally rather than maternally. The correlated with hypermethylation of the exon
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Crews and Skinner laboratories have shown that IV promoter of the BDNF gene. This change
the antiandrogenic fungicide vinclozolin has was found to be reversible when the pups were
transgenerational effects on anxiety and stress- treated with the DNA methylation inhibitor
evoked behavior [92,93] . These alterations seem zebularine [105] . Although not linked to stress
to be transmitted via the paternal germline by perse, differences in anxiety in the high and low
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altered DNA methylation of the sperm genome response to novelty rat lines has been linked to
[94] . Another potential case of paternal epigenetic developmental differences in DNMT1 expres-
inheritance has been described by Dietz etal. sion in the hippocampus and amygdala [106] ; as
[95] , who found that the offspring of socially these differences are found largely in the first
defeated fathers were more susceptible to sub- week of life, they are further evidence of the
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maximal defeat in adult life than the offspring epigenetic sensitivity of this life stage. The find-
of control fathers. However, invitro fertilization ings reviewed here have firmly established the
did not transmit the increased susceptibility to power of postnatal environment to impact the
defeat. One could conjecture that the effect epigenome, the stress axis, behavior and synaptic
may relate to differential maternal investment plasticity.
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alters anxiety behavior and stress-evoked corti- and childhood, towards the utilization of the
costerone to at least the F2generation. Maternal organisms energetic resources for reproductive
transmission was blocked by cross-fostering, and purposes. As such, it marks the point at which
seems to occur via maternal behavior. However, most mammals turn outward from parental
the mechanism of paternal transmission in this attachments towards a wider social milieu. The
model is, as yet, unclear [96] . demands of that milieu are likely more severe in
MS is another model of early-life stress and animals with complex societies, such as human
adversity. MS paradigms typically involve sepa- beings. Adolescence is marked by a number
rating the pups from their dam for several hours of changes in behavior, brain structure and
a day during the first 2weeks of post-natal life. function [107] . It is also the time of life where
Like the LG-ABN model, MS can have trans- humans are most likely to develop a variety of
generational effects on stress reactivity, although psychiatric disorders including substance abuse,
it too appears to act via paternal transmission schizophrenia and depression [108] . Why this
[97] and have a differential effect on males and is the case, when many of these disorders are
females. Much like low LG-ABN rearing, MS associated with stress exposure in earlier life, is
results in increased HPA reactivity and clear unclear. However, one could hypothesize that
effects on hippocampal synaptic plasticity and the increased demand for social cognitive capac-
learning in adulthood [29,98,99] . This is, in part, ity at this age could reveal pre-existing deficits
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tively little is known about the effects of stress appear to be the basis for its role in memory
on brain structural and functional plasticity at formation [124,125] . Similarly, Maddox and Schafe
this time. Little has been reported with regard have shown that HDAC inhibition in the lateral
to alterations in epigenetic phenomena. Given amygdala enhances fear memory reconsolida-
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the importance of the adolescent transition in tion, while inhibition of DNMTs interferes with
the development of human mental disorders, it reconsolidation [126] .
is to be hoped that this dearth of knowledge can A series of studies performed in the Tsai labo-
soon be remedied. ratory established a role for histone acetylation
in memory formation as well. Beginning with
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Neuroepigenetic effects of stress in the observation that environmental enrichment
adult life ameliorated memory deficits in a transgenic
The hippocampus, a key brain structure for mouse model of neurodegenerative disease,
episodic and spatial memory and also mood these investigators explored the possibility that
regulation, is a highly stress-sensitive tissue and, these effects might be replicated by treatment
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as a result, it has received substantial attention with an HDAC inhibitor, as in fact proved to
from stress, learning and memory and mood be the case as HDAC inhibition improved both
disorder researchers. The hippocampus shows memory and synapse formation in the anterior
plasticity in response to both acute and chronic cingulate cortex [127] . Subsequently, the same
stressors, as well as antidepressant treatments, group showed that these effects were regulated
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and also spatial and episodic learning tasks; via the classI HDAC, HDAC2, which appears
indeed, many learning and memory tasks are to be the major HDAC of its class in neurons.
stressful, and many stressors produce some HDAC2 did so by regulating the expression
learning (e.g.,[114]). The adult hippocampus of a relatively small group of genes, including
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also expresses as large a variety of epigenetic a number of glutamate receptor subunits and
enzymes as any other brain region, as a perusal BDNF [128] , the latter finding replicating an ear-
of the Allen Brain Atlas will demonstrate [115] . lier one by Bredy etal. [129] . A significant linkage
Therefore, the hippocampus has proven to be between epigenetic chromatin modifications and
fertile ground for the study of the intersection synaptic plasticity was recently established by
of stress, plasticity and epigenetics, although, as Calfa and collaborators, who found that inhibi-
we shall see, it is not the only brain region where tion of HDACs blocked the capacity of BDNF
this intersection can be found. to increase both spine density and the volume of
Fear conditioning, which is by definition psy- excitatory neurotransmitter release in the CA1
chologically stressful, has been of great use as of the rat hippocampus [130] .
a behavioral probe of the epigenetic influences One of the earliest findings explicitly
on learning and plasticity in animal models. As implicating stress in the regulation of epigen-
this area has been the subject of recent, system- etic marks in brain was that of Bilang-Bleuel
atic review, both in this journal and elsewhere etal. who showed that an acute stress, forced
[116,117] , we will not attempt a comprehensive swimming, increased the dual phospho-acetyl
treatment here; rather, we will focus on salient mark at serine 10 and lysine 14 of histone H3
findings with relevance to stress-induced plas- (H3S10p-K14ac) in the rat dentate gyrus [131] .
ticity. It has long been hypothesized that DNA The H3S10p-K14ac mark is associated with
transcriptional activation [132,133] , and previous tri-methylation in the nucleus accumbens also
work had shown it to be associated with treat- change in response to cocaine administration,
ment with a variety of neurotransmitter agonists where this mark is also associated with changes
[134] . Building upon this finding, the Reul group in dendritic spines [151] . In the hippocampus,
showed that the same effect was observable this mark is profoundly upregulated by acute
with a different stressor, and that it was NMDA stress or by chronic treatment with the anti-
receptor-dependent and associated with neuro- depressant fluoxetine [152] ; the same study also
nal activation (as measured by c-fos induction) demonstrated stress-dependent changes in both
in the same cells that showed changes in the the H3K4me3 (moderately increased in chronic
double mark [135,136] . Exercise, which may be stress) and H3K27me3 (substantially reduced by
regarded as a positive stressor [54] , also increases acute stress) marks in the hippocampus. Both
levels of the mark, suggesting that changes in H3K4 and H3K27 methylation were found to
H3S10p-K14ac may be an adaptive, rather than be reduced at the prodynorphin promoter in the
pathogenic, response to stress [137] . GABAergic striatum of rats subjected to an acute swim stress
interneurons appear to be a countervailing force [153] . The balance of evidence from these studies
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on stress-induced increases in H3S10p-K14ac suggests that interventions that increase levels of
[138] . Given the established synergy between the the H3K9me3 mark or inhibit HDAC2 can pro-
glutamate and glucocorticoid systems in produc- mote resilience to stress and depressive behavior
ing stress-induced plasticity [139] , it is of interest in animal models and, by extension, also in man.
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that stress-induced increases in H3S10p-K14ac Our finding that acute restraint stress rapidly
require both systems acting through the novel and globally upregulates the H3K9me3 mark in
intermediaries Elk-1 and MSK1. The GR inter- a hippocampus-specific fashion [152] , led us to
acts directly with these proteins, and this inter- hypothesize that this mark might be involved
action appears to promote their phosphorylation in suppressing the expression of transposable
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by the ERK-MAPK pathway acting downstream elements, which can be induced by stress [154] .
of activated NMDA receptors. Furthermore, Tight control of genomic stability in terminally
this coinduction of the mark plays a role in the differentiated neurons is of obvious importance,
memory of the stress that produced it [140,141] . and so we used chromatin immunoprecipitation
Social defeat stress, which is one of the better sequencing of the H3K9me3 mark to deter-
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rodent models of human depression in terms of mine if in fact this mark showed a selective bias
ethological and face validity [142] , also has an towards accumulation at transposable elements
impact on the neural epigenome, as was first after acute stress. Our results showed that, while
demonstrated by the Nestler laboratory [143] . there was little directionality to the changes in
They showed that chronic social defeat in adult H3K9me3 levels on genes, stress produced an
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mice significantly increased the levels of the increase in the mark at more than 50-fold more
repressive H3K27 trimethyl mark at the BDNF transposable elements than elements that saw a
promoter, while treatment with antidepressant decrease, accounting for at least 50,000 distinct
drugs increased marks associated with active loci. This effect was accompanied by a 50% or
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transcription, such as H3 acetylation and H3K4 more decrease in the expression of retrotranspo-
methylation [143,144] . Later studies by the same son RNAs, notably the B2 SINE and IAP endog-
group linked similar changes with changes in enous retrovirus (see Figure2 ) [155] . These results
HDAC function in the nucleus accumbens after point to an entirely novel area of investigation
stress or cocaine treatment. Notably, they found in the neurobiology of the stress response, sug-
that HDAC2 had an antidepressant effect in the gesting that a large and hitherto underexplored
defeat model [145,146] . A further link with the portion of the genome may be involved both in
epigenetic actors in learning and memory was the normal response to stress and, potentially,
the discovery that defeat increased accumbal in the pathogenesis of stress-related disorders.
DNMT3A expression, while chronic cocaine The latter possibility has been given more weight
reduced it, and that these changes were associ- by the recent finding that LINE-1 and Alu ret-
ated with plastic changes in dendritic spines in rotransposons were differentially DNA methyl-
the same brain region [147] . Resilience to social ated between veterans with PTSD and combat-
stress also correlates with altered DNA meth- deployed controls [156] . Transposable elements
ylation of the CRH gene in the paraventricular can of course contribute to genomic instability,
hypothalamus [148] and levels of the repressive but they may also have significant roles in the
H3K9 and K27 trimethylations in the accum- regulation of transcription, RNA stability and
bens [149,150] . Levels of histone H3K9 di- and so on [157] .
of
20,000
15,000
Number of islands
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Stress
Stress up
10,000 Stress down
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5000
0
ERV/LTR
Satellite
LINE
SINE
DNA
ncRNA
Simple/low
complexity/
other
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Hippocampus RNA
2
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0 Genomic Transcriptional
Fold change
instability? stability?
-2
A
-4 *
**
-6
B2 control
B2 stress
IAP control
IAP stress
L1 control
L1 stress
maladaptation to stress. The recent finding that involved in the aging process is only beginning
piRNAs, whose actions were long thought to be to be understood.
restricted to the gonads, play an active role in It is evident that aging is associated with
synaptic plasticity in the Aplysia [165] , raises the changes in the epigenome; indeed, a global com-
question as to their involvement in mammalian parison of methylated DNA between human
synaptic plasticity, memory and stress. Similarly, newborns, young adults and centenarians found
in Arabidopsis thalania, transposable element that extreme old age was associated with a sub-
RNA has the capacity to regulate the plants stantial decline in overall DNA methylation in
stress response via the siRNA pathway [166] . Our lymphocytes [177] . In the brain, however, DNA
own observations that the RNAs for a number of methylation increases with age, as is evident in
transposable elements are regulated by stress in some animal models and human studies [178181] .
the hippocampus, suggests that there may be a Furthermore, evidence is emerging that some dis-
role for these ncRNAs in the mammalian stress orders of aging, such as Alzheimers disease, may
response as well. be associated with even greater increases in levels
of methylated DNA in the brain [182] . DNMT3a
of
Neuroepigenetic effects of stress in expression in the hippocampus increases with
aging age and, interestingly, caloric restriction, which
Aging is associated with changes in the stress is thought to promote healthy aging [183] , reduces
axis, cognition and neuronal plasticity, and this increase [184] . As caloric restriction tends to
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is regarded by some as the last epigenetically increase circulating corticosteroids [185] , this study
regulated stage of development [167,168] . While raises interesting questions about how a life his-
aging is generally viewed as a gradual process, tory of stress might alter the DNA methylation
it includes more clearly demarcated endocrine profile in the aging brain, although it is worth not-
events relevant to both stress responsivity and ing that corticosteroids can have positive effects
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brain plasticity, such as menopause and adreno- on plasticity and that stress-mediated changes
pause. However, the degree to which these events involve other molecules, such as glutamate [186] .
might be under epigenetic control is not yet On the other hand, another recent study found
clear. In the aged rat, the HPA axis response to reduced levels of DNMT3a in aged mouse brain
stress is prolonged when compared with young and showed that increasing the levels of the 3a2
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adult animals, and GR levels decline [169,170] . version improves cognition. This is an issue that
These findings by Robert Sapolsky led him to will have to be resolved with further experimenta-
propose the glucocorticoid cascade hypothesis tion, with particular attention paid to the stress
of aging in 1986 [171] , which proposes that age- history of the animals. As has been well estab-
induced decline in GR feedback exposes the lished, here and elsewhere, different stress his-
ut
brain to progressively higher levels of cortico- tories can produce widely divergent outcomes in
steroids, which, in turn, impairs hippocampus brain and behavior. Brain DNA hydroxymethyl-
structure and function and leads to cognitive ation also appears to increase with age and due to
decline. While this hypothesis has been modi- its poorer interaction with DNA methyl-binding
A
fied to de-emphasize neuronal loss and empha- proteins is likely to interfere with their function
size age-related loss of structural and functional [187,188] , and, by extension, cognition.
plasticity [172] , it is evident that stress and HPA Several groups have found that aging and
activity have a role in vulnerability to brain aging neurodegeneration is associated with increased
in both humans and animals [1,173] . As is readily HDAC2 expression in the hippocampus and
apparent, aging is often associated with cognitive reduced acetylation at the H3K9 and H4K12
decline, and some of this decline with reduced loci, and that age-related cognitive deficits could
plasticity. In plastic, stress-sensitive regions, such be reversed with enhanced BDNF signaling,
as the hippocampus, aging is associated with HDAC inhibitors or shRNA directed against
reductions in synapse number, neurogenesis HDAC2 [189191] . Most salient in terms of the
and long-term potentiation, accompanied by an present discussion is the finding that the increase
increase in long-term depression after an acute in HDAC2 expression in the neurodegenerat-
stressor [174176] . In the aged rat prefrontal cortex, ing brain is driven by the binding of GR to the
chronic stress retains the capacity to reduce den- HDAC promoter, clearly linking the stress axis
dritic complexity, but the region appears to have with what is, at present, the best understood epi-
lost the resilience present in young adults and genetic mediator of age-related cognitive decline
does not recover to prestress levels of structural [189] . In contradistinction to these findings, other
complexity [12] . How stress and epigenetics are groups have found that histone H4 acetylation
of
rats with the exception of an increase in global based analyses using optogenetics, as will more
H4 acetylation, which was associated with age in established approaches.
both impaired and unimpaired animals. What As we have pointed out above, the adolescent
differed in age-impaired animals was an inabil- period, in spite of its obvious importance as a
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ity to reduce HDAC2 expression in response to period of increased susceptibility to a variety of
behavioral activation [193] , and a lack of coor- stress-related mental disorders [196], has had little to
dination of epigenetic changes with memory no examination of the impact of stress on epigen-
performance. Another important finding of the etic marks in the brain. Nor has much attention
latter study was that several commercial antibod- been paid, as yet, to how stress-induced epigenetic
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ies against specific histone modifications lacked changes at one life stage, such as infancy, might
the advertised specificity, which is worth noting, interact with stress, and susceptibility to stress in
both in evaluating the literature to date, and in later life stages, such as adolescence or aging.
designing future studies in the field of neuroepi- Much of the research to date on the neuro
genetics. While we now have the basic lineaments epigenetics of stress has logically focused on well-
ho
of an understanding of some of the interactions known genes, for example, GR and BDNF. It is
between the stress axis and epigenetic and syn- likely, however, that these are not the only genomic
aptic plasticity in the brain, it should be evident elements involved in the epigenetics of stress and
that much further work is to be done before our anxiety. As an example, the mineralocorticoid
understanding of the impact of stress during this receptor, which plays a significant role in HPA axis
ut
final life stage is fully understood. feedback and anxiety [197] , has yet to be examined
for epigenetic activity in the brain, although it has
Conclusion been associated with altered histone methylation
While the interactions between external stressors, in the kidney [198] . The availability of cheaper and
A
epigenetics and brain plasticity across the lifes- deeper next-generation sequencing technologies
pan have only begun to be explored, it is read- will be of great help in broadening the number of
ily apparent that this area of exploration is offer- potential genomic elements examined to encom-
ing insights into how the environment produces pass more than the genes themselves to the other
persistent changes in the brain and behavior. Of 95% of the genome, most of which may be actively
greater interest from the translational perspective transcribed [199] , although their functions remain
is the fact that many of these changes appear to be largely unexamined.
reversible via structured environmental interven- For basic discoveries about the epigenetics
tions or pharmacologic means. of stress and anxiety to leave the bench and be
A problem for the study of epigenetics in the translated to the bedside, epigenetic pharmacol-
brain is the transient nature of many of the phe- ogy must advance substantially. While many his-
nomena coupled with the necessity for making tone deacetylase inhibitors have been approved for
exvivo observations. As we have argued through- human use, drugs to inhibit or increase histone
out, stress has significant effects on the epigenome, methylation are relatively few and far between,
and thus attention to stress history, reducing the although some methyltransferase inhibitors are
stress of sacrificing experimental animals and rapid becoming available for research purposes [200,201] .
tissue dissection are very important considerations. As to the many other histone modifications or
It is not evident that these concerns are always ncRNA, still less is known.
of
tion; although quite useful when well employed, how stress in our environment produces lasting
they can substantially muddy our understanding changes in our brains, mood and behavior.
when they are not. The question of how a rela-
tively nonspecific HDAC inhibitor, for example, Financial & competing interests disclosure
ro
alters the expression of only a small fraction of RG Hunter and BS McEwen thank NIH MH41256 and
genes in a small number of brain regions, as has the Help for Depression Research Foundation (HDRF) for
been observed by a number of groups, is also their support. The authors have no other relevant affilia-
highly significant. One could imagine that the tions or financial involvement with any organization or
combination of chromatin status, and the bind-
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entity with a financial interest in or financial conflict with
ing of various elements of the transcriptional the subject matter or materials discussed in the manuscript
machinery, could regulate the accessibility of apart from those disclosed.
certain genes to manipulation, but this hypoth- No writing assistance was utilized in the production of
esis has not yet been tested in the brain. It is to be this manuscript.
ho
Executive summary
Background
Stress has a significant effect on the health of a variety of bodily systems.
ut
Early-life stress is well established to have lasting impacts on health in both humans and animal models.
The effects of stressful life experience can be transmitted epigenetically from parents to offspring across multiple generations.
Both pre- and post-natal stress can alter the expression of a variety of epigenetic marks in the brain, with significant consequences for
gene expression and brain function.
Adolescence is one of the most poorly understood periods with regard to the effects of stress on brain plasticity, yet it is likely to be
one of the most important to our understanding of human mental disorders.
Neuroepigenetic effects of stress in adult life
Stress in adult life is well known to influence health and disease.
The brain, particularly regions such as the hippocampus, is sensitive to stress in adult life, as in early life, although the impacts can be
different.
Adult stressors and stressful learning paradigms have been shown to alter a number of different epigenetic pathways in the brain.
Recent studies suggest that stress interacting with epigenetic mechanisms may alter the behavior of transposable elements in the
genome of the hippocampus.
Neuroepigenetic effects of stress in aging
The aging brain is less resilient to stress than during earlier life stages; thus, stress can have a more persistent negative impact on brain
structure and function during aging.
There are epigenetic correlates of aging in the brain, and some of these have shown alteration with stress.
of
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