# simple CFA script

library(lavaan)
library(semPlot)

##load the data

data <- read.csv("~/e_files/TEACHING/751 SEM/class assignments/R/f cfa
basics.csv")

##create the models

three.model = '
familiar =~ q3 + q13 + q14 + q16 + q20 + q21 + q22 + q23 + q27 + q30
attitudes =~ q1 + q2 + q4 + q5 + q8 + q11 + q18 + q19 + q28 + q29
aversion =~ q6 + q7 + q9 + q10 + q12 + q15 + q17 + q24 + q25 + q26
'

one.model = '
computer =~ q3 + q13 + q14 + q16 + q20 + q21 + q22 + q23 + q27 + q30 + q1 +
q2 + q4 + q5 + q8 + q11 + q18 + q19 + q28 + q29 + q6 + q7 + q9 + q10 + q12 +
q15 + q17 + q24 + q25 + q26
'

##run the models

three.fit = cfa(three.model, data = data)
one.fit = cfa(one.model, data = data)

##create pictures
semPaths(three.fit, whatLabels="std", layout="tree")
semPaths(one.fit, whatLabels = "std", layout = "tree")

##summaries
summary(three.fit, standardized=TRUE, rsquare=TRUE)
modindices(three.fit, sort. = TRUE, minimum.value = 30.00)
summary(one.fit, standardized=TRUE, rsquare=TRUE)
fitMeasures(three.fit)
fitMeasures(one.fit)

##residual correlations
correl = residuals(three.fit, type="cor")
View(correl$cor)
zcorrel = residuals(three.fit, type = "standardized")
View(zcorrel$cov)
#complex CFA

library(lavaan)
library(semPlot)

##import the dataset

data <- read.csv("~/e_files/TEACHING/751 SEM/class assignments/R/g 2nd
order.csv")

##create the model - first order model

first.model = '
depression =~ Q3+Q5+Q10+Q13+Q16+Q17+Q21
anxiety =~ Q2+Q4+Q7+Q9+Q15+Q19+Q20
stress =~ Q1+Q6+Q8+Q11+Q12+Q14+Q18
'

##second order
second.model = '
depression =~ Q3+Q5+Q10+Q13+Q16+Q17+Q21
anxiety =~ Q2+Q4+Q7+Q9+Q15+Q19+Q20
stress =~ Q1+Q6+Q8+Q11+Q12+Q14+Q18
global =~ depression + anxiety + stress
'
alternative.model = '
depression =~ Q3+Q5+Q10+Q13+Q16+Q17+Q21
anxiety =~ Q2+Q4+Q7+Q9+Q15+Q19+Q20
stress =~ Q1+Q6+Q8+Q11+Q12+Q14+Q18
global =~ NA*depression + anxiety + stress
global ~~ 1*global
'
##bifactor model
bifactor.model = '
depression =~ Q3+Q5+Q10+Q13+Q16+Q17+Q21
anxiety =~ Q2+Q4+Q7+Q9+Q15+Q19+Q20
stress =~ Q1+Q6+Q8+Q11+Q12+Q14+Q18
global =~
Q3+Q5+Q10+Q13+Q16+Q17+Q21+Q2+Q4+Q7+Q9+Q15+Q19+Q20+Q1+Q6+Q8+Q11+Q12+Q14+Q18
'

##run the models

first.fit = cfa(first.model, data=data)
second.fit = cfa(second.model, data=data)
bifactor.fit = cfa(bifactor.model, data=data, orthogonal = TRUE, std.lv =
TRUE)

##pictures
semPaths(first.fit, whatLabels = "std", layout="tree")
semPaths(second.fit, whatLabels = "std", layout="tree")
semPaths(bifactor.fit, whatLabels = "std", layout="tree")

##fit indicees
fitMeasures(first.fit)
fitMeasures(second.fit)
fitmeasures(bifactor.fit)

#summary
summary(first.fit, standardized = TRUE, rsquare=TRUE)
summary(second.fit, standardized = TRUE, rsquare=TRUE)
summary(bifactor.fit, standardized = TRUE, rsquare=TRUE)