CTAn

CTAn history legend:
* updated functionality
+ added functionality
- bug fixes
added/updated functionality (only for Version+)
Version 1.14
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[1.14.4.1]
+ added to the <BatMan> a possibility to clear task or dataset list by
combination of the Ctrl key and the <Remove> button.
+ added the <Black Body> color palette to the <Palette> dialog.
[1.14.4.0]
- fixed issue: the <Browse> button of the <Save from ROI...> dialog does not
select current folder if it's locating at the "Desktop".
+ added preview of the ISQ-files and the RAW-files (generated by CTAn) in the
<File open> dialog.
+ added import of the VFF-files (created by the GE eXplore Locus scanners).
[1.14.3.2]
+ added to the <Individual object analysis> plug-in a checkbox <Save to
Clipboard color-coded images> that allow to generate color-coded images according
to object size (ECDa/ESDv).
+ added the <Action> option to the <Reload> plug-in. When the <Clipboard> is
selected there are three options to reload it:
- <Delete> - clear and free allocated memory;
- <Fill by Image>, <Fill by ROI> - allocate the clipboard memory and fill
it with initial image/roi data.
- fixed: wrong position of the main toolbar after applying the <Reset window
layout> command.
+ added a parameter symbol line to the report of the <Individual object
analysis> plug-in.
[1.14.3.1]
- fixed an issue of exporting/importing RAW-files.
[1.14.3.0]
- fixed a bug of v.1.14.2.0: program crashes after pressing the button <Save
results> in the <Individual 2D object analysis> dialog.
- fixed a bug of <Arithmetical operations> plug-in: operation does not take
effect when a <Value> is the subtrahend.
+ added multiple ROI drawing:
- add free drawn shape (shift+right mouse button);
- subtract free drawn shape (ctrl+right mouse button).
[1.14.2.0]
+ added a tab <Collection> at the <Plug-in> window of the CTAn/BatMan where can
be collected often used task lists.
* the <Export task list> dialog has possibility to pin saved task list to the
<Collection> tab.
* changed the default directory for importing/exporting task lists. From now
it's defined by <Preferences/Directories/Collection and external plug-ins files>.
* updated the <Despeckle> and <ROI shrink-wrap> plug-in.
[1.14.1.0]
- fixed minor bugs.
- fixed a bug of the <Geometrical transofmations> plug-in: the operations
applied to the image are affecting to the region of interest and vice versa.
* updated Fractal dimension calculation.
[1.14.0.0]
* Unicode version.
- fixed a bug of importing task file: the plug-in configuration cleared when
changing the size of data structure.
[1.13.12.0]
+ added the <Convert to 8 bit> dialog to the procedure of opening isq-files.
[1.13.11.0]
- fixed a bug of the 1.13.8-10 versions: The <Bitwise operations> plug-in in
some cases produces wrong results.
+ added the NOR and NAND operations to the <Bitwise operations> plug-in.
[1.13.10.1]
- fixed a bug of the 1.13.8-10 versions+: crashing when the 3D stereology is
started.
[1.13.10.0]
* changed the naming procedure in the <Save bitmaps>, the <3D analysis> and the
<Individual object analysis> plug-ins to reduce the length of automatically
generated subfolders.
Now subfolders in the <Save bitmaps> plug-in named as:
- VOI - images inside ROI;
- IMG - only images;
- ROI - only ROI;
- CLP = clipboard.
Subfolders in the <3D analysis> plug-in named as:
- TBTH - images of trabecular thickness;
- TBSP - images of trabecular separation.
Subfolder generated by the <Individual object analysis/2D space> plug-in
named as I2D.
* renamed the <General scientific/Fragmentation index (Fr.I)> to the <General
scientific/Surface convexity index (SCv.I)>.
- fixed bug: the <Individual object analysis/2D space> plug-in applied always
to the full images instead of images inside ROI.
+ added the <Z-position> field to the output of <Histogram/2D space> plug-in.
[1.13.9.1]
+ added the <Density> parameter to the results of <Individual object analysis>
plug-in (2D and 3D).
The native functions use an original image as the map of density but the
plug-in uses the <Clipboard> for that.
- fixed bug of v.1.13.8-9: the <Save bitmaps> plug-in saves <Clipboard> images
with wrong numbering.
[1.13.9.0]
+ added an operation of copying of the selected ROI to the group of slices, for
that:
1. Select the slice 'A' with the ROI to be copyed;
2. Press the <Ctrl>+<Shift> key and click the left mouse button at the slice
'B'. The ROI from slice 'A' will be copyed to all slices within the range 'A'-'B'.
- fixed: the MIL parameter <Sphere centered at> was shown as the position
relatively the VOI.
+ added a possibility to dump the raw data of MIL ( theta, phi, number of
intersections ).
- fixed bug: the <Automatic (Otsu method)> and the <Multilevel (Otsu method)>
of the <Thresholding> plug-in in <2D space> show an image inside ROI instead of a
full image when the checkbox <Inside ROI> is checked.
+ added the <Two-dimensional (Otsu method)> to the <Thresholding> plug-in.
[1.13.8.1]
* changed the original MIL algorithm to remove an instability of results
obtained from 3d-volumes with the different proportions of dimensions.
+ added to the <View> menu the command <Reset Window Layout>.
[1.13.8.0]
+ added to the <Plug-Ins> menu/toolbar the command <Clipboard view>.
The <Clipboard> is an extra 3D-volume that can be used as storage for
intermediate data.
Initially the <Clipboard> if empty and does not require extra memory.
But at the moment of the first use an extra 3D-volume will be allocated in
the memory.
For that:
+ added to the <Bitwise operations> plug-in a parameter <Clipboard>.
+ added to the <Arithmetical operations> plug-in a parameter <Clipboard>.
+ added to the <Geometrical transformations> plug-in a parameter <Clipboard>.
+ added to the <Save bitmaps> plug-in a parameter <Clipboard>.
+ added to the <Reload> plug-in a parameter <Clipboard>.
The <Reload> plug-in frees the memory allocated for the <Clipboard>.
+ added to the <Bitwise operations> plug-in an optiion to copy value to
<Image>/<Region of Interest>/<Clipboard>.
+ added an exclamation icon for the plug-in loaded with "problem"
configuration.
+ added a check-box <Show this dialog for the next mismatch> to the dialog
witch appears when loaded the the plug-in with "problem" configuration.
* the output of the <Histogram> plug-in aligned for line-by-line comparison.
[1.13.7.0]
* the checking of the dataset integrity allows the difference of image
resolution in one pixel (to avoid problems with loading oversize scanned datasets).
[1.13.6.0]
+ added to the report file an indication of the manual loading/reloading of
dataset in the <Custom processing>.
[1.13.5.1]
- fixed bug of vv.1.13.3-1.13.5: blank movie created by the <Export to movie>
command.
[1.13.5.0]
- fixed issue of loading DICOM files that contain an "Icon Image Sequence" tag
(0088,0200).
- fixed bug: if adaptive rendering is chosen in the preferences then the
function to make the 3D model at the binary page does not work.
[1.13.4.0]
- fixed bug of the <Thresholding> plug-in: an inversed prethresholding when
background is <Light>.
+ added the <Average principal moment of inertia (min)> to the summary of the
<2D analysis>.
[1.13.3.1]
- fixed bug of v.1.13.3.0: wrong thickness calculation.
[1.13.3.0]
+ added an export of 3D model to the CTVox Mobile data file (VXM-file).
* renamed the <Export to I3M-file> by the <Export to mobile device>.
* renamed the <Export to AVI-file> by the <Export to movie>.
* enabled a <Cancel> button in the progress window when started the <Save
Images from ROI>.
* modified: always create cache images loaded from the removable media or
remote(network) drive.
+ added support of the tiff-files with the big endian ("motorola") byte order.
- fixed bug: the message <Can't open file ******* for output> appears at the
start of a plug-in when single file was opened with the resizing.
- fixed bug of vv. 1.12.10-1.13: impossible automatically load isq-file.
+ added <Minimum Feret diameter> to the <Indivadual 2D analysis> dialog and
plug-in.
[1.13.2.1]
- fixed bug of v. 1.13.2.0: the check box <Create folder named> of the <Save
Images from ROI> dialog displays an empty string "".
[1.13.2.0]
- fixed issue: on the multimonitor systems application does not restore a
previous position when the main monitor is not the left one.
- fixed bug of the vv.1.12.1.0-1.13.1.1: with an evaluation license the CTAn
displays "Demo version" but it is still working as an evaluation.
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[1.13.1.1]
- fixed bug: a random color of saturation into the movie created by the
<File\Export\to AVI-file" command.
[1.13.1.0]
+ added the option <Area/Volume out of range> for the <Remove black/white
speckles> of the <Despeckle> plug-in.
[1.13.0.0]
+ added the option <Area/Volume within range> for the <Remove black/white
speckles> of the <Despeckle> plug-in.
+ added the number values for the brightness/contrast (or color density)
sliders of the <Palette> window.
+ added the <Biggest inner circle diameter> to the <Individual 2D analysis>
dialog and plug-in.
[1.12.12.0]
- fixed bug: the parameter <Average in 3D> does not reported correctly in the
output file.
* modified the prethreshold functionality of <Thresholding> plug-in:
- intensity becomes the 0 when it <= than low threshold level;
- intensity becomes the 255 when it >= than high threshold level.
[1.12.11.0]
- fixed bug: the CTAn vv.1.12.1.0-1.12.10.3 with lic-file created after
01.03.2012 does not show correctly lycense type and user name in the <About>
dialog.
- fixed bug: when an adaptive threshold selected in the <Tresholding> plug-in
the <2D-analysis> and <3D-analysis> plug-ins report wrong threshold levels.
[1.12.10.3]
+ added the <Average moment of inertia (x)> and the <Average moment of inertia
(y)> to the 2D analysis summary results.
[1.12.10.2]
- fixed issue of <Save *** images> dialogs: the target directory was not valid
when the folder attribute has archive bit.
[1.12.10.1]
- fixed bug: a multi-frame DCM-file was opening as the single-frame.
[1.12.10.0]
+ added the import of DICOM DCM-files to the batch manager.
+ added the <Convert to 8 bit> dialog for custom selecting range of data from
12/16 bit DICOMs to 8 bit.
+ added export images as the TIFF-files to the <Save bitmaps> plug-in and to
the following dialogs:
- <Save images from ROI>;
- <Save resliced images>;
- <Save MIP images>;
- <Save shadow images>.
+ added two buttons <Customize...> on the configuration dialog of the <2D-
analysis> plug-in.
Dialogs which opened by those buttons allow to include/exclude parameters
from the full results table and the summary table.
[1.12.9.0]
+ added to the <Region of interest/Size...> dialog the fields <Left> and
<Bottom> where one can specify the ROI position relatively an image origin
(according to the <Preferences/General/Image origin> setting).
+ added the import of DICOM DCM-files. Supported only following transfer
syntaxes (noncompressed data or RLE-compressed):
- 1.2.840.10008.1.2
- 1.2.840.10008.1.2.1
- 1.2.840.10008.1.2.2
- 1.2.840.10008.1.2.5
[1.12.8.1]
- fixed: distorted text in the <Keyboard shortcuts> dialog when used the large
system font size (>90 DPI).
[1.12.8.0]
+ added the import of Scanco ISQ-files.
* changed: the dropdown list <Bacground color> shows original image colors.
* renamed the "processed images" menu item to the "measurement".
* renamed the "binary images" menu item to the "binary selection".
- fixed: the dialogs <Profile/Reslice model>, <Profile/Maximum intensity
projection> and <Profile/Shadow projection> save new dataset png-files as bmp-
files.
* redesigned the <Save images from ROI> dialog, added options to automatically
create new dataset folder and to restart program with new dataset.
* redesigned the <Save binary images> dialog and added an option to
automatically create new image folder.
* redesigned the <Save resliced images> dialog and an added option to
* redesigned the <Save MIP images> dialog and added an option to automatically
create new image folder.
* redesigned the <Save shadow images> dialog and added an option to
[1.12.7.0]
+ added to the <Bitwise operations> plug-in the <Value> argument.
+ added the <Comment> plug-in to add some text to the task list output file.
[1.12.6.0]
+ added the <Geometrical transformations> plug-in with the following options:
- <Flip vertical>;
- <Flip horizontal>;
- <Translate>;
- <Rotate by 180>.
[1.12.5.0]
+ added the <Arithmetical operations> plug-in with the following options:
- <ADD>;
- <SUB>;
- <MUL>;
- <DIV>.
* moved operations <MIN> and <MAX> from the <Bitwise operations> plug-in to the
<Arithmetical operations> plug-in.
[1.12.4.3]
- fixed issue: multiple raw-files cannot be opened as a dataset.
+ added the <Scan order> combo-box on the <Import raw data> dialog where are
available following options:
- <Upside-down> - the raster scan starts from the lower left corner;
- <Normal> - the raster scan starts from the upper left corner;
+ added a checkbox <Normal raster scan order> on the <Save bitmaps> plug-in
dialog and <Save Images from ROI> dialog (available only for RAW-data type)
[1.12.4.2]
- fixed an compatibility issue with ATI/AMD graphics cards: the <Plot> view of
the <Volume> window does not react to the changes of color.
* changed a chamfer mask to obtain more rounded sphere (used in 2D/3D thickness
calculations).
+ added extra information about a datset in the header of output file generated
by the batch manager.
An information about ROI file shown only when it was loaded and doesn't
modified later.
+ added a checkbox <Navigates to position of object centroid> at the
<Individual 3D analysis> dialog.
* updated: the <Send image into projection window> command of the <Profile>
dialogs now can be applyed to the resized images too.
But this "projection" will be temporary used only with an instance of loaded
dataset.
Similar temporary "projection" will be applyed when after pressing the <Send
image into projection window> button one responses "No" to the
question :"XXX_spr.bmp already exists.\nDo you want to replace it?"
[1.12.4.1]
- fixed bug of versions 1.12.1- 1.12.4: when the CTAn is starting under full
license (generated after the 01.03.2012) the <Preferences/Volume/Maximum dimension
of texture> is limited by 128 and the number of datasets in the batch manager is
limited by 2.
[1.12.4.0]
+ added the <Plug-Ins> menu.
+ added following commands to <Plug-Ins> dialog and menu:
- <Toggle pause state of plug-in>;
- <Resume paused task>.
- fixed bugs of versions 1.12.3.x:
- an error message ("float4 parsing error") apears when loading dataset on
the laptops with hybrid graphics;
- a navigation clip plane of the <Volume> window does not updated when the z-
position is changing.
[1.12.3.1]
+ added the <Show the results based on direct counting of pixels/voxels> check
box to the <Preferences/Advanced> dialog.
* renamed a <Equivalent circle diameter (ECD)> by the <Area-equivalent circle
diameter (ECDa)>.
+ added to the <Individual 2D object analysis> dialog and plug-in following
parameters:
- <Perimeter-equivalent circle diameter>;
- <Hydraulic diameter>.
+ added to the <Individual 3D object analysis> dialog and plug-in following
parameters:
- <Volume-equivalent sphere diameter>;
- <Surface-equivalent sphere diameter>;
- <Sauter diameter>;
- <Sphericity>.
+ added a marker which shows an object (centroid) position of the selected item
of the <Individual 3D object analysis>.
- fixed issues of the <Individual 3D object analysis> dialog:
- the <Centroid z> was shown as a relative position from the bottom slice
of VOI;
- sometimes the <Centroid x> and <Centroid y> don't updated when the
<Preferences/General/Image origin> changed.
* changed: in the Summary data of the <2D analysis> and <3D analysis> plug-ins
the fieds <Lower grey threshold> and <Upper grey threshold> will report the values
obtained by the <Thresholding/Global> or the <Thresholding/Automatic (Otsu
method)/3D> plug-ins.
Otherwise they will report "n/a".
* changed: in the table of results of <2D analysis> plug-in will be included
two colums: <Lower grey threshold> and <Upper grey threshold> when the
<Thresholding/Automatic (Otsu method)/2D> plug-in was applyed.
[1.12.3.0]
+ added the <Send image into projection window> button to the <Profile/Cut
model> dialog.
+ added the <Send image into projection window> button to the <Profile/Reslice
model> dialog.
+ added the <Send image into projection window> button to the <Profile/Maximum
intensity projection> dialog.
+ added the <Volume/Plot> menu item and toolbar button.
[1.12.2.0]
+ added the <Send image into projection window> button to the <Profile/Shadow
projection> dialog.
This command creates/overwrites ***_spr.bmp file and open it in the <Shadow
projection> window.
This option is available only if a dataset opened without resizing.
* renamed the <Projection/Show full area> menu item by <Disable highlighting>.
+ added new menu items to the <Projection> submenu:
- <Show full area>;
- <Show active area>;
- <Show selected area>.
+ added to the <Volume> rendering window:
- a possibility to shift a scene using the left mouse button with Ctrl-
key;
- an indication of shifting of virtual cube;
- an indication of zoom factor.
+ added the <Preferences/Volume/Projection type> combo-box with two options:
<Perspective> and <Parallel>.
They describe the method of mapping three-dimensional object to a viewport.
[1.12.1.0]
+ added the <Average principal moment of inertia (max)> to the summary results
of 2D analysis.
* renamed the <Profile/Apply ROI> to the <Profile/Apply VOI>. Other <Profile>
routines consider this option at runtime.
+ added the <Profile/Shadow projection...> menu item and toolbar button.
+ added: the <Region of interest/Size...> dialog shows dimensions of a bounding
box in the equivalent values of a default unit.
+ added the <Output color of class thresholding> list-box for <Multilevel (Otsu
method)> of <Threshold> plug-in.
There are three options: <Mean intensity in class>, <Threshold level of
class> and <Class id>.
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[1.12.0.0]
+ added the <Profile> submenu.
+ added the <Reset to default> menu item to the <Profile> submenu. This command
reset the position of profile line to default state.
+ added the <Rotate to...> menu item to the <Profile> submenu( alternative way
see in [1.11.4.1] ). This command allows to rotate a profile line to specified
angle.
+ added the <Rotate by...> menu item to the <Profile> submenu( alternative way
see in [1.11.4.1] ). This command allows to rotate a profile line by an arbitrary
angle.
+ added: a <Selection> dialog appears when double clicking on the <Selection>
pane of the status bar.
+ added the <Zoom...> menu item to the <Image> submenu and image context menu
where an exact zoom-factor can be specified.
+ added: a zoom-slider appears when double clicking on the <Zoom> pane of the
status bar.
+ added the <Rotate by...> menu item to the <Region of interest>
submenu( alternative way see in [1.11.4.2] ). This command allows to rotate an
Image ROI.
+ added the <Size...> menu item to the <Region of interest> submenu. It also
appears when double clicking on the <ROI size> pane of the status bar.
* renamed the <Size> tab of <Analysis> dialog by <Size (ECD)>.
+ added the checkbox <Maximum width> on the <MIP> dialog. This option allows to
expand the width of a profile line to the maximum possible value in current
orientation.
+ added the checkbox <Maximum width> on the <Reslice model> dialog. This option
allows to expand the width of a profile line to the maximum possible value in
current orientation.
[1.11.10.0]
- fixed bug: wrong fractal dimension number.
[1.11.9.3]
* improuved the <Volume/Attenuate> preview.
- fixed bug: the <Filtering/Kuwahara/3D space> plug-in goes to an infinite loop
when the Z-spacing exceed the size of kernel radius.
- fixed bug: the reopening of the <Individusl 3D object analysis> dialog does
not recalculate values if the several results were deleted from the list of
objects.
[1.11.9.2]
+ added the <File/Export/to I3M-file> menu item wich can be used to export
dataset to the "ImageVis3D Mobile" application
(http://itunes.apple.com/us/app/imagevis3d-mobile-universal/id378071694?mt=8).
+ added the <Preferences/Volume/Mobile volume data/Maximum dimension> spin
control to limit the size of the exported volume data.
[1.11.9.1]
+ added a zooming with mouse wheel inside <Volume> window. Avaliable only when
the option <Preferences/General/Forward mouse wheel to controls> is active.
* fixed: inactive toolbar in the undocked (float) window.
[1.11.9.0]
+ fixed issue of outer image surfaces of 3D-model generated by adaptive
rendering algorithm with smoothing.
+ added the <Preferences/General/Forward mouse wheel to controls> option that
allows to use mouse wheel in all program windows without activate them.
[1.11.8.0]
+ added in the <3D model> plug-in a selection between apply to <Image inside
ROI>, <Image> or <ROI>.
+ added in the <3D model> plug-in an option <Smoothing> for the <Adaptive
rendering> algorithm.
+ added a <Standard deviation> of the Tb and Sp values in the <3D analysis>
results table.
[1.11.7.0]
- fixed bug: the application hangs when one opens a single image with resizing
and starts custom processing.
+ added the new command line key:
/Ps - specifies the new <s> pixel size in mm of image/dataset.
+ added in the <BatMan/Properties> dialog the button <Change> that allow to
modify the pixel size of image/dataset.
+ the <File/Save binary...> command saves images according of the
<Preferences/Region of Interest/Save Images> options.
- fixed bug: wrong z-position numbering inside roi-file when loaded a stack of
resized binary images as ROIs.
+ added the checkbox <Save only the current slice> to the <Save> plug-in. This
option is avaliable only in the <Custom processing> mode.
[1.11.6.0]
- fixed bug: in the CTAn the interpolation of ROI becames a dynamic just after
ROI loading (this bug does not affect the BatMan).
[1.11.5.1]
- fixed bug: the program crashes at the save operations if the pathname of data
contains the symbol '%'.
[1.11.5.0]
+ added the export of 3D model to the ASCII STL-file
[1.11.4.2]
+ added rotation of Image ROI. When mouse cursor is over the small circle at
the right side of the bounding rectangle
one can rightclick mouse to call context menu with command <Rotate by...> or
left click and drag mouse to rotate shape.
[1.11.4.1]
* increased speed of the <Despeckle> plug-in.
* increased speed of the <Shrink-wrap> plug-in.
* increased speed of the <3D analysis/Additional values/Number of objects>
calculation.
implemented multithreaded version of the <Individual 2D object analysis>
(native and plug-in).
+ added a tooltip indication of the value of angle while the profile line is
changing.
+ added a saving of state of following options:
- <Profile/Apply ROI>;
- <Histogram/Logarithm scale>;
- <Analysis/Area histogram>;
- <Analysis/Show absolute values>.
+ added rotation of profile line around his own centroid:
SHIFT+'+' - clockwise rotation;
SHIFT+'-' - counter clockwise rotation.
When mouse cursor is over the begin/end of profile line one can rightclick
mouse to call context menu with two commands <Rotate profile line to...> and
<Rotate profile line by...>.
[1.11.4.0]
- fixed bug: the <Individual 2D object analysis> slightly overrates the value
of porosity of several objects.
[1.11.3.6]
* changed the output of the <Save bitmaps> plug-in
* in the <Preferences/Region of interest> three options were set to default
value and were hided:
<Restore binary selection>(On), <Restore volume of interest>(On), <Prompt on
load>(Off).
[1.11.3.5]
- fixed issue: stl-file fails to load in the Cinema4D.
[1.11.3.4]
- fixed bug of v.1.11.3.3: zero length of postfix filename when one uses "Open
with..." explorer command.
[1.11.3.3]
+ added an option to the <Profile> bar:
the previous drawn line returns to the default vertical or horizontal line
when doubleclicking the left mouse button on the image.
+ added intermediate levels between the power 2 values in the
<Preferences/Volume/Maximum dimension of texture> droplist.
* fixed bug of v.1.11.3.2: division by zero
+ added the <Preferences/General/Filename postfix length> option that specifies
the default number of digits in the postfix of filename.
+ added the <#> droplist in the <Load image or dataset> dialog that allows to
modify the length of the postfix of filename.
Initial value of that control will taken from the preferences or from the
command line. The command line has higher priority.
The postfix length does not change till loading of new dataset.
[1.11.3.2]
+ added the <Multilevel (Otsu method)> thresholding (2D/3D) to the
<Thresholding> plug-in.
The output of plug-in is grayscale image with N+1 colors, where N is number
of threshold levels.
[1.11.3.1]
* renamed command <ROI view> by <VOI view> in the <Histogram> menu.
* removed menu item/tab <From Selection> from the <Histogram> menu/dialog.
* the plotting of histogram updated according to the combination of <VOI view>
state and active tab (<From image>/<From dataset>) of <Histogram> dialog .
[1.11.3.0]
+ added the <Automatic (Otsu method)> thresholding (2D/3D) to the
<Thresholding> plug-in.
* the Otsu thresholding implemented for the <Automatic thresholding> command of
the <Histogramm> menu / toolbar.
[1.11.2.0]
+ added <Lower grey threshold> and <Upper grey threshold> in the results text
file of individual 2D/3D object analysis (CTAn native dialogs).
[1.11.1.1]
- fixed bug: the <Individual object analysis> plug-in does not report two 2D
parameters: <Equivalent circle diameter> and <Roundness>.
[1.11.1.0]
* changed SkyScan logo in the <Print Layout> dialog.
- fixed bug: wrong painting of image when the <Individual 2D object analysis>
dialog is opened.
- fixed bug in the <Configuration> dialog of <3D model> plug-in:
when button <Cancel> is pressed the configuration does not restore its
previous state.
[1.11.0.0]
- fixed bug of versions 1.10.10-12: sometimes the program crashes when clicked
<Analysis/Porosity> tab.
Version 1.10
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[1.10.12.0]
- fixed an issue of versions 1.10.2-11: in the BatMan the browsing of ROI files
starts from wrong folder
[1.10.11.0]
* updated the <Thresholding> plug-in: removed pre-smoothing option. It can be
done with an internal <Filtering> plug-in.
+ added the checking an integrity of dataset. The nonregular image numbering in
the dataset can be a reason of wrong calculations.
[1.10.10.2]
- fixed an issue of versions 1.10.5-10: the application hangs when a 3D model
creation is started in <Adaptive rendering> mode.
[1.10.10.1]
+ added the check-box <Add border> on the <Preferences/Region of interest>
dialog.
This option enables/disables an addition of extra space around image when the
<Save Images/Inside accumulated ROI bounds> is selected.
+ added the calculation (based on direct counting of pixels) of the 2D values
to the <Analysis> window, <Save 2D analysis results> command and <2D analysis>
plug-in:
- <*Object area>;
- <*Total ROI area>;
- <*Percent object area>;
- <*Average object area>;
- <*Average object equivalent circle diameter>;
- <*Area of closed pores>;
- <*Area of open pore space>;
- <*Total area of pore space>;
- <*Closed porosity (percent)>;
- <*Open porosity (percent)>;
- <*Total porosity (percent)>.
+ added the calculation (based on direct counting of pixels) of the 2D values
to the <Summary 2D data> of the <Save 2D analysis results> command and <2D
analysis> plug-in:
- <*Total VOI volume>;
- <*Object volume>;
- <*Percent object volume>;
- <*Mean total crossectional ROI area>;
- <*Mean total crossectional object area>;
- <*Average object area per slice>;
- <*Average object equivalent circle diameter per slice>;
- <*Closed porosity (percent)>.
* impoved the <Individual 2D object analysis>
- fixed bug of versions 1.10.2-10: the <Major diameter> and <Minor diameter>
report wrong results
[1.10.10.0]
implemented multithreaded version of the <3D analysis/Stereology>
calculations
+ added the calculation (based on direct counting of voxels) of the <*Object
volume>, <*Volume of pores>, <*Porosity> to the <Individual 3D object analysis>
dialog and plug-in.
[1.10.9.0]
* increased speed of the <3D analysis/Additional values/Fractal dimension>
calculation
- fixed bug of versions 1.10.2-8: the Batch Manager does not open roi-files
[1.10.8.0]
- fixed bug: the plug-in and native versions of the <Fragmentation index>
sometimes report different values
implemented multithreaded version of the <Individual object analysis> plug-in
(3D)
implemented multithreaded version of the <3D analysis/Basic values>
calculations
implemented multithreaded version of the <3D analysis/Additional
values/Structure model index> calculations
implemented multithreaded version of the <3D analysis/Additional
values/Number of objects,..,Euler number> calculations
[1.10.7.0]
- fixed bug of versions 1.10.5-6: the averaging of dataset in 3D causes the
program crash
* impoved the <Opening by reconstruction> and <Closing by reconstruction>
functions in the <Morphological operations> plug-in (grayscale 2D)
implemented multithreaded version of the <Morphological operations/Erosion>
plug-in (grayscale 2D/3D)
implemented multithreaded version of the <Morphological operations/Dilation>
implemented multithreaded version of the <Morphological operations/Opening>
implemented multithreaded version of the <Morphological operations/Closing>
implemented multithreaded version of the <Morphological operations/Opening by
reconstruction> plug-in (grayscale 2D)
implemented multithreaded version of the <Morphological operations/Closing by
reconstruction> plug-in (grayscale 2D)
[1.10.6.0]
- fixed small issue of popup warning window in the <Profile> dialog
implemented multithreaded version of the <Thresholding/Adaptive(median-C)>
plug-in (2D/3D)
implemented multithreaded version of the <Thresholding/Adaptive(mean-C)>
plug-in (2D/3D)
implemented multithreaded version of the <Thresholding/Adaptive (mean of min
and max values)> plug-in (2D/3D)
[1.10.5.0]
+ the radius of <Gaussian blur> and <Unsharp mask> filters (the <Filtering>
plug-in) accepts non-integer values
implemented multithreaded version of the <Filtering/Gaussian blur> plug-in
(2D/3D)
implemented multithreaded version of the <Filtering/Unsharp mask> plug-in
(2D/3D)
implemented multithreaded version of the <Filtering/Median> plug-in (2D/3D)
implemented multithreaded version of the <Filtering/Uniform> plug-in (2D/3D)
implemented multithreaded version of the <Filtering/Kuwahara> plug-in (2D/3D)
[1.10.4.0]
+ added the 3D implementation of <Unsharp mask> filter to the <Filtering> plug-
in
+ added the elevation of privelege when it required
- fixed an issue when program starts under the Guest user account
[1.10.3.0]
* the <Smoothing> plug-in renamed to the <Filtering>
+ added the filter <Unsharp mask> (2D version) in the <Filtering> plug-in.
"... Typically three settings control digital unsharp masking:
- Amount is listed as a percentage, and controls the magnitude of each
overshoot (how much darker and how much lighter the edge borders become).
This can also be thought of as how much contrast is added at the edges.
It does not affect the width of the edge rims.
- Radius affects the size of the edges to be enhanced or how wide the edge
rims become, so a smaller radius enhances smaller-scale detail.
Higher Radius values can cause halos at the edges, a detectable faint
light rim around objects. Fine detail needs a smaller Radius. Radius and Amount
interact; reducing one allows more of the other.
- Threshold controls the minimum brightness change that will be sharpened or
how far apart adjacent tonal values have to be before the filter does anything.
This lack of action is important to prevent smooth areas from becoming
speckled. The threshold setting can be used to sharpen more-pronounced edges, while
leaving subtler edges untouched. Low values should sharpen more because fewer areas
are excluded. Higher threshold values exclude areas of lower contrast."
(http://en.wikipedia.org/wiki/Unsharp_masking)
[1.10.2.0]
+ added a X/Y translation of VOI when the Left mouse button with the Ctrl key
is pressed inside the fixed shape of ROI.
+ added new type of region of interest - an Image ROI. The Image ROI has a
limitation: it should contain less than the 16K fragments.
(Here the fragment is a continuous part of the image stripe). The Image ROI
can be translated, resized and saved into the ROI file.
+ added the loading of VOI from the set of monochrome bitmap files.
This option is available when one changes the type of the file to the <Bitmap
files (*.bmp)> on the <Load the regions of interest> dialog.
+ added two options on the <Preferences/Region of Interest> dialog:
- the <Center bitmaps> defines how should the loaded bitmaps are positioned;
- the <Resize bitmaps> enables the resizing of loaded bitmaps according to
their pixelsize.
+ added the <Load Image ROI> command to the <Region of Interest> menu
+ added the check-box <inside VOI> on the <Histogram> plug-in dialog
- fixed the issue with building a cubic ROI
[1.10.1.6]
- fixed a bug of formatting output data: the "Number of voxels" in the output
histogram can report negative value
[1.10.1.5]
/nNUM - number of digits in the postfix of the filename (default value is
4)
- fixed an issue of the writing of png-images under the Windows 7
[1.10.1.4]
+ added a PNG-file format in the list of supported files
* changed the mouse button commands for the volume rendering window:
LEFT - zoomin/zoomout;
LEFT+SHIFT - move clip plane;
RIGHT - rotate all;
RIGHT+CTRL - rolate clip cube;
+ added the reading of the 24-bit RGB tiff files
- fixed an issue of the crushing of program when on the Sony Vaio with NVidia
GeForce
+ added the calculation of SMI in the <Individual 3D object analysis> dialog
and plug-in
[1.10.1.3]
+ added the <MIN> and <MAX> operations in the <Bitwise operations> plug-in
+ added the <Opening by reconstruction> and <Closing by reconstruction>
operations (only 2D versions) in the <Morphological operations> plug-in.
[1.10.1.2]
* updated the drawing of a polygonal ROI (the dotted line closes a polygon
shape).
- fixed an issue: in several situations the <File/Open> dialog loads the
dataset as a single file.
+ added a combo-box <Number of orientation> of MIL on the <Advanced> property
page of the <Preferences> dialog.
+ added a check-box <Averaging in 3D> on the <File/Open> dialog. The number of
averaged images in 3D can be less than the 2D resize factor and depends of the
spacing between images.
+ added an information about resizing of images on the
<BatMan/Dataset/Properties> dialog.
/v - use averaging in 3D (applicable only when the "/d" key ("resize by")
is specified).
* updated: the <User defined histogram intervals> menu item and button in
<Analysis> panel are available for all types of distribution and have his own
independ configurations.
+ added a <Unit of item> combobox on the <User defined histogram intervals>
dialog for the <Size>, <Major diameter> and <Perimeter> distributions. There are
two options the "um" and the "pixel".
* updated: when the default ROI type changed and there are not the edited ROIs
the ROI shapes update immediately (before to apply the new default ROI one had to
press the <Reset all ROI> button).
+ added the <Palette window sliders> radio buttons on the <Preferences/Tools>
dialog.
There are two options: the <Brightness/Contrast> (the style of the previous
versions of the CTAn ) or the <Color density range> ( the style similar to
presented in the Dataviewer ).
This options takes effect after the restart of program.
[1.10.1.1]
+ added to the <Measure> tool the <Area> tab that allows to delineate and
measure areas with a freehand tool.
+ added the <Apply thresholding> button and menu item in the <Volume> preview
window
+ added a button <Create/Update> program shortcuts on the <Preferences/Tools>
dialog.
It will create/update the User Desktop or the User Start menu shortcus of the
CTAn and BatMan.
The shortcuts will be the different for the 32/64-bit versions of program.
...................................................................................
.................
[1.10.1.0 Release]
* fixed a bug of the version 1.10.0.5
[1.10.0.5]
+ added a combo-box <Origin of scaling> on the <Volume> property page of the
<Preferences> dialog where one can choose the center or the left down point of
image as the reference point of the scaling in the <Volume> preview window
* fixed an issue: the <Reload> plug-in does not restore initial state of a
grayscale/binary flag of the restored data
* fixed an issue with volume renering on the ATI Mobility Radeon video card
* improved the <Morphological operations> <Closing>/<Opening> in 3D space
* improved the <ROI shrink-wrap> plug-in in 3D space
* increased a speed of the binary <Morphological operations> in 3D space
* increased a speed of the <ROI shrink-wrap> plug-in in 3D space
[1.10.0.4]
* increased a speed of the binary <Morphological operations> in 2D space
* increased a speed of the <ROI shrink-wrap> plug-in in 2D space
[1.10.0.3]
* removed the <Save color-coded image...> command from the <Analysis> dialog
and menu.
+ added a check box <Save color-coded image> in the <Save histogram of
distribution> dialog
+ added a <3D space> mode in the <Threshold> plug-in
+ added a <SWAP> operation in the <Bitwise operations> plug-in
[1.10.0.2]
- fixed bug: the <Individual 3D analysis> crashes when a filename contains symbol
'%'
[1.10.0.1]
+ added the <Peripheral VOI surface> and the <Percent intersection surface>
parameters at a "Summary 2D data" field of the <2D analysis> (native and plug-in)
+ added the <Save color-coded image...> command to the <Analysis> dialog and
menu. It allows to save a single colored image which shown at the image preview
window.
[1.10.0.0]
+ added the tab <Volume> at the <Preferences> dialog.
This tab is visible only when a video adapter supports the OpenGL 2.0 and
higher.
At this tab can be specified the following options:
- default preview at loading ( full volume or volume of interest );
- maximum dimension of the texture ( it depends of video adapter and fixed
for demo and evaluation licenses at 128 )
Version 1.9
___________________________________________________________________________________
_________________
[1.9.3.4]
* in the registration dialog one item renamed from the "Registration code" to
the "Product ID"
[1.9.3.3]
+ added in the <3D analysis> dialog (native and plug-in) three new items:
- <Euler number>;
- <Connectivity>;
- <Connectivity density>.
...................................................................................
.................
[1.9.3.2 Release (Update of 1.9.1.0)]
* special build without the <Volume> preview window. It's just the fix of bugs
of the versions 1.9
[1.9.3.1]
+ added the new command line keys:
/rROIPATHNAME - load a roi for dataset
/tTASKPATHNAME - load a task file
/lLISTPATHNAME - load a list of datasets (applicable only when the "/a"
key is specified)
/c - close the program when the calculation are finished (applicable only
when the "/a" key is specified)
/a - autostart the task routines
/? - show the command line format
[1.9.3.0]
+ added an <Axes> command to the <Volume> menu and toolbar
- fixed an issue: rarely the <Custom processing> window does not accept the
plug-ins that can work on binary images and shows an error message: "Images must be
black and white"
- fixed a bug: the <3D analysis> plug-in saves the <Save color-coded images...>
for TbTh and TbSp in the opposite sequence
- fixed a bug: the <3D analysis> plug-in calculates wrong TbTh and TbSp when
was selected the partial VOI and the <Preferences/Advanced/Restrict the thickness
calculations to within the VOI only> flag is disabled.
To fix this issue the following plug-ins were modified to proceed a dataset
according a VOI restriction:
- <Thresholding>
- <Smoothing>
- <Morphological operations>
- <Despeckle>
- <Bitwise operations>
[1.9.2.9]
+ added a <Navigation clip plane> command to the <Volume> menu and toolbar
- removed a flickering of the listboxes
[1.9.2.8]
+ added a <Clip plane> command to the <Volume> menu and toolbar
* increased the speed of the volume color transfer function
- fixed some small bugs
+ added new function in the <Volume> preview: by the double clicking of the
right mouse button one can toggle a zoom origin between the center and the left-
bottom side of window
[1.9.2.7]
- fixed a bug: wrong size of images when used the <Save dataset from ROI>
command with an inverted ROI
[1.9.2.6]
- fixed a bug of versions 1.9.2.4-5: invalid HUTAG structure size
[1.9.2.5]
+ added the <Volume> popup menu
[1.9.2.4]
- fixed an issue: native jpeg resolution tag does not support a dpi > 65535
(~0.39um) and we add the proprietary tag
- fixed an issue: the resampling of dataset produces files in the opposite
sequence
+ added the <Volume> preview vindow (avaliable only for video cards which
support a hardware acceleration of Open GL)
where one can:
- rotate the volume and the clip box when the Left mouse button is pressed;
- rotate only the clip box when the Left mouse button and the Ctrl key are
pressed;
- zoom the volume and the clip box when the Right mouse button is pressed:
- the moving to center - Zoom out,
- the moving from center - Zoom in;
- select and move the clip plane when the Left mouse button and the Shift key
is pressed.
For the instance the volume cube dimesions are limited by 128x128x128 pixels.
[1.9.2.3]
- fixed a problem with a window position on the multi-monitor systems
- fixed a bug of versions 1.9: at the start of program several options of
<Preferences/General> did not applied to environment
- added in the <MIP> dialog a <Number of projections> edit box
[1.9.2.2]
- fixed an issue with a drag-and-drop of the 16-bit TIFF-files
[1.9.2.1]
* disabled the SkyScan stamp checking from the TIFF-file loading
[1.9.2.0]
+ added to the <BatMan/Preferences/Tools> an option to use the global CTAn
read-only or the local persist BatMan preferences
+ added to the <Measure> tool the <Coordinate> tab that allows to record a xyz
positions of clicked points
+ added to the <Despeckle/Sweep> plug-in function the <Remove> combobox where
are specified the objects to be deleted
+ added: the <Preferences> dialog goes to the last visited tab in the program
process instance
+ added a combobox to the <Preferences/Histogram> dialog which sets the way of
the calibration: HU->BMD or AC->BMD
...................................................................................
.................
[1.9.1.0 Release]
+ added the export of 3D model to the binary PLY-file (tested with
http://www.cyberware.com/products/software/plyview.html)
[1.9.0.0]
+ added the loading of "old" versions of the task lists in the <BatMan>. The
message box will appear when the wrong configuration of plug-in has been found and
the status of the task item will be marked as "invalid configuration".
Version 1.8
___________________________________________________________________________________
_________________
[1.8.2.4]
* the <Length> parameter of the <Individual 2D analysis> renamed to the <Major
diameter>
* the <Breadth> parameter of the <Individual 2D analysis> renamed back to the
<Minor diameter> (see v. 1.8.2.3)
* the <Equivalent circle diameter per slice> parameter of the <2D analysis>
renamed to the <Average object equivalent circle diameter per slice>
* the <Equivalent circle diameter> parameter of the <2D analysis> renamed to
the <Average object equivalent circle diameter>
* updated the porosity calculation in the <3D analysis> and <Individual 3D
object analysis>
+ added the <Surface of closed pores> to the <3D analysis> dialog (native and
plug-in)
+ added the <Surface of pores> column to the <Individual 3D object analysis>
dialog
[1.8.2.3]
- fixed: program does not read the raw data file as the single-volume when the
filename postfix contains four digits
- fixed: the moments of inertia about the axes X and Y were swapped
+ added the Principal moments of inertia (max and min) in the <2D analysis> and
<Individual 2D object analysis> results (native and plug-in)
* improved the calculation of an object orientation
* the <Minor diameter> parameter of the <Individual 2D analysis> renamed to the
<Breadth>
[1.8.2.2]
- fixed the bug of v. 1.8.2.0-1: the <Save from ROI> function creates the
single-volume raw data file with an inverted z-order of images
[1.8.2.1]
- fixed the bug of v. 1.8.2.0: wrong information saved in the raw data file
header file when the ROI size has changed
+ added in the <Import raw data> dialog the new data types:
- unsigned short;
- signed short;
- unsigned long;
- signed long;
- float;
- double.
+ added two new fields <Minor value> and <Major value> in the <Import raw data>
dialog where one can cpecify the effective range of the imported raw data
[1.8.2.0]
+ added the possibility to prevent the unwished shut down of computer when the
batch processing is in progress
+ added the importing of raw data from the single-volume file or from the set
of enumerated files (for the moment supported only the 8-bit data)
+ added the <Raw data file type> to the <Preferences/General> dialog where one
can specify the type (extension of file) of raw data
+ added the <Raw data file type> in the <Save bitmaps> plug-in and the <Save
from ROI> dialog.
The check box <Single file> of those dialogs allows to choose the single-
volume output raw data.
+ added the <Text file type> in the <Preferences/General> dialog where one can
choose the default file extension of results data.
[1.8.1.9]
+ added the button <Save profile> to the <Profile> window
+ added the new parameters in the <Individual 2D analysis>:
- <Minor diameter>;
- <Aspect ratio>.
+ added the new buttons and menu items to the <Region of interest> toolbar and
menu:
- <Static interpolation> - the old style of interpolation
- <Dynamic interpolation> - the current style of interpolation
- <Adaptive interpolation> - (new!) the fusion of the previous two styles
[1.8.1.8]
* the two <2D analysis> items renamed:
- from <Average object size> to <Equivalent circle diameter>
- from <Average object size per slice> to <Equivalent circle diameter per
slice>
[1.8.1.7]
+ added the checkbox <Perform the advanced three-dimensional stereology> in the
<Preferences/Advanced> dialog
+ added the results of stereology analysis to the output of the <3D analysis>
plug-in
+ added in the <2D analysis> dialog (native and plug-in) the new items:
- <Number of closed pores>;
- <Area of closed pores>;
- <Perimeter of closed pores>;
- <Area of open pore space>;
- <Open porosity(percent)>;
- <Total area of pore space>;
- <Total porosity(percent)>.
+ added in the <3D analysis> dialog (native and plug-in) the new items:
- <Volume of open pore space>;
- <Open porosity(percent)>;
- <Total volume of pore space>;
- <Total porosity(percent)>.
- fixed the bug of versions 1.8.1.5-6: the incorrect displaying of a grayscale
jpeg image when the <RGB to gray> conversion not used
+ implemented the fast toggle back to the <Analysis> view and fast reopen of
the <Individual 2D object analysis>
when the ROI, binary selection and z-position of image have not changed
+ implemented the fast reopen of the <Individual 3D object analysis> when the
binary and VOI selection of image have not changed
+ added the new parameters in the <Individual 2D analysis>:
- <Equivalent circle diameter>;
- <Roundness>.
[1.8.1.6]
- fixed the bug of the version 1.8.1.5: program crashes when open the
<Preferences> dialog in the <BatMan> mode
[1.8.1.5]
+ added the item <RGB to gray> in the <Preferences/General> dialog wich select
the way of converting of the color images to the grayscale
...................................................................................
.................
[1.8.1.4 Release]
- fixed the bug: when the datasets loaded had been reconstructed by steps other
than step 1, the created
MIP image (along profile) does not reflect the step intervals in Z direction
and it is vertically compressed
[1.8.1.3]
* changed the symbol of 2d parameters <Average object size>: "Av.Obj.Le" ->
"Av.Obj.Sz";
- fixed the bug: the program crashes while build the 3D-model by adaptive
rendering with grayscale smoothing and binary selection started from zero
[1.8.1.2]
- fixed the bug: if the program pathname contains the space symbol the dialog
with message "X:\XXXXXXX\XXXX contains an incorrect path" is shown while
registration
- fixed the bug of v. 1.8.1.1: wrong format of report line of <3D analysis>
[1.8.1.1]
+ added in the <3D analysis> dialog (native and plug-in) three new items:
- <Number of closed pores>;
- <Volume of closed pores>;
- <Closed porosity (percent)>.
- fixed the bug of versions 1.8.0.9 and 1.8.1.0: the
<Preferences/General/Notation> item did not save state
[1.8.1.0]
+ added the <Total intersection surface> item in the summary results of <2D
analysis>. It does not include the horizontal intersection surfaces
[1.8.0.9]
+ added the <Bitwise operations> plugin that contains <COPY>, <NOT>, <OR>,
<AND>, <XOR> and <SUB> operations
+ added in the <Save bitmaps> plug-in an item <Insert scale bar>
+ added in the <3D analysis> plug-in the checkboxes <Save color-coded
images...> for TbTh and TbSp
* removed the <Image copy> operation from the <Shrink-wrap> plug-in. Use for
that a <COPY> operation of the <Bitwise operations> plug-in.
- fixed the "border" issue of 3D operations of <Shrink-wrap> plug-in when the
<stretch over holes> is selected
* added the item <Notation> in the <Preferences/General> dialog where one can
apply <Non-scientific> or <Scentific> notation to numbers
- fixed the bug: the 64-bits version stops working when builds a huge 3D-model
by <Adaptive rendering>
[1.8.0.8]
- fixed problem: the video-compression codec locks the avi-file in error case
[1.8.0.7]
+ added in the <Profile> view the moving of a profile line by the combination
of <Shift> and arrows keys
+ added in the <ROI> view the moving of a ROI-shape by the arrows keys while
the left mouse button is pressed inside ROI
+ added in the <ROI> view the resizing of a ROI-shape by the arrows keys while
the left mouse button is pressed inside a corner of ROI bounding rectangle
[1.8.0.6]
- fixed the bug: <Save bitmaps> plug-in doesn't allow to change the <Apply to>
item
- fixed the bug: the <Adaptive rendering> doesn't accept the <Tolerance> and
<Locality> properties
+ added in the <Preferences/Advanced/Adaptive rendering> the <Smoothing> item.
It doesn't affect to the plug-ins.
[1.8.0.5]
- fixed the problem of version 1.8.0.4: wrong drawing of polygon when delete
the node.
[1.8.0.4]
- added the <Edit> command in the <Region of Interest> menu and toolbar. It
enables/disables an editing of the polygon nodes
[1.8.0.3]
- fixed the bugs of versions 1.8.0.0-2:
- wrong report filename in several plug-ins;
- small difference of SMI reported by CTan and BatMan
[1.8.0.2]
- fixed the bug of versions 1.8.0.0-1: wrong format of report line in the <3D
analysis>
[1.8.0.1]
* improved the algorithm of the pores calculation in the <Individual 3D object
analysis>
[1.8.0.0]
+ added the check box <Resize to the ROI bounds> in the <Save bitmaps> plug-in
+ added the <Individual 3D object analysis> comand in the <Analysis> menu
+ added the configuration dialog for the <Individual object analysis> plug-in
with a 2D/3D space selection
* updated the <Histogram/Calibration...> dialog
Version 1.7
___________________________________________________________________________________
_________________
[1.7.0.7]
+ added a stretching the profile line
[1.7.0.6]
+ added the <Individual 2D analysis> plug-in
...................................................................................
.................
[1.7.0.5 Release]
- fixed small bug of version 1.7.0.4
[1.7.0.4]
* updated resizing mechanism of ROI's (very slow redrawing on some ATI
videocards)
[1.7.0.3]
+ added the shortcut <Alt+Del> for <Set Interpolated ROI>
- fixed bug: wrong ROI-size when save full size images
- fixed bug: wrong ROI-shapes when used the z-position slider while the ROI
interpolation in progress
- fixed the bugs in the stereology calculations (thanks to Peter Saparin)
[1.7.0.2]
[1.7.0.1]
- intermediate builds of program for a test purpose only
[1.7.0.0]
* small cosmetic changements
Version 1.6
___________________________________________________________________________________
_________________
[1.6.1.3]
+ added the check box <Restrict the thickness calculations to within the VOI
only> to the <Preferences/Advanced> dialog
+ added support for jpeg files for 64-bit version of CTAn
* increased ~ four times the speed of the <Median> filtration in the
<Smoothing> plug-in
- fixed problem: tooltips blocks the real time refreshing of some
actions( calculation, animation ... )
[1.6.1.2]
! the first 64-bit build
+ udded compability for Windows Vista
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!!!!!!!!!!!!!!!!!!!
ATTENTION to the users of Windows Vista!!! If you have installed the previous
(less than 1.6.1.2) version of program under Vista, the new version of program will
require the registration authentication.
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!!!!!!!!!!!!!!!!!!!
+ added html-help support
+ added a tool for measuring length of the freehand lines to the <Image
preview> window and <Shadow Projection> window.
Press Shift+left button mouse to activate it. This tool is disabled for the
<Image preview> while the ROI editing is active.
+ added the command <Measure...> to the <Image> menu and toolbar. This dialog
activates the protractor, line or path tool (depends of selected tab) and allows to
collect results and save them as text file.
When this dialog is active the ROI editing is disabled.
...................................................................................
.................
[1.6.1.1 Release]
+ added in the <Histogram> plug-in the selection of a calibration unit
* in the text report of individual 2d analysis of objects the parameter symbols
and units are the separate lines
[1.6.1.0]
+ added the <Preferences> menu item in the <System> menu of the <BATch MANager>
- fixed: the color of the <Turn Off Button> in the <BATch MANager> does not
restore the grayed state after deactivation while batch processing in progress
* in the <MIP> dialog box it is allowed the number of image slices to be
entered by text editing, not only by the spin button
- fixed: wrong z-position of a model that created by the "Adaptive rendering"
from partial VOI
- fixed: shrink-wrap in 3d with stretch over holes removes the top and bottom
slices
[1.6.0.0 Prerelease]
Version 1.5
___________________________________________________________________________________
_________________
[1.5.1.12]
+ added the <Rotate by angle> edit-box in the <Save from ROI...> dialog. Note
that the roi-file will be copied only when the rotation angle equal zero.
[1.5.1.11]
+ added the dataset log-file copying in the <Save from ROI>, <Save binary> and
<Save resliced images>
+ added the check box <Copy dataset log file> in the <Save bitmaps> plug-in
+ added the commands <Set the Top of Selection> (<Ctrl+Home>) and <Set the
Bottom of Selection> (<Ctrl+End>)
+ added the check-box <Overwrite output files> in the <BatMan> dialog
[1.5.1.10]
* changed the accelerators:
1. <Set the selection reference> - <Ctrl+Insert> (before it was <Insert>);
2. <Next Drawn ROI> - <Ctrl+Up> (before it was <+>);
3. <Previous Drawn ROI> - <Ctrl+Down> (before it was <->);
4. Image <Zoom In> - <+> (before it was <Right>);
5. Image <Zoom Out> - <-> (before it was <Left>);
+ added the edit mode when polygonal ROI is selected. One can change the
position of shape nodes, remove selected node (<Delete> key) or insert the new one
(<Insert> key).
* changed the reaction to mouse input when polygonal ROI is selected:
1. Move a ROI when the left mouse button is pressed inside the shape and
cursor is moved (before it was the <SHIFT key+left mouse button>);
2. Start the free-hand ROI drawing when the <SHIFT+left mouse button> is
pressed and cursor is moved (before it was the left mouse button).
+ added: for all ROI shapes it's possible to cancel the drawing/moving/editing
procedure and restore the previous shape state if one press the <ESC> key before
the release of left mouse button.
- fixed bug: in the <BATch MANager> the <About> dialog box always shows: "Demo
version".
+ added: the call of the <Ctrl+Delete> key will reset the Plolygonal ROI and
assign it with its boundaries.
+ added the command <Cut ROI> to the ROI menu and toolbar.
+ added the keyboard accelerators:
1. <ROI Cut> - <Ctrl+X>;
2. <ROI Copy> - <Ctrl+C>;
3. <ROI Paste> - <Ctrl+V>;
4. <Fit to Window> - <*>;
5. <Actual Size> - <=>;
6. <Properties> - <Alt+Enter>;
7. <Top Image> - <Home>;
8. <Bottom Image> - <End>.
+ added the <Purge outside VOI> menu item in the ROI submenu (<Shift+Del>).
+ added the <Keyboard Shortcuts> dialog that shows the actual keyboard
shortcuts (<Alt+F1>)
[1.5.1.9]
* updated the thickness measurement (sphere fitting) in the 3D analysis: the
updated algorithm crosses the VOI boundary to prevent small spheres going into the
corners, but takes more calculation time.
+ added the new type of ROI interpolation that will be the default. The
previous one is obsolete but will applied when old roi-files is loaded until the
button <Reset all ROI> be pressed.
The algorithm contains the fine interpolation of non-polygonal ROIs and a
little bit more realistic polygonal interpolation.
- fixed bug: the vertical flip of JPEG-images in the CTAn versions 1.5.1.
(6,7,8)
[1.5.1.8]
+ added the volume of objects inside each range of the thickness and separation
distributions
+ added <Histogram> plug-in
[1.5.1.7]
+ added a <3D space> mode in the <ROI shrink-wrap> plug-in
- fixed bug: wrong model size when one create a 3D-model from the images with
reduced size
[1.5.1.6]
+ added the HU information tag in the JPEG-file
+ added an JPEG image format in the <Save bitmaps> plug-in
+ added an JPEG image format in the <Save from ROI> dialog
+ added an JPEG image format in the <Cut model> dialog
+ added an JPEG image format in the <Reslice model> dialog
+ added an JPEG image format in the <Maximal intesity projection> dialog
+ added the <JPEG quality factor> in the <Preferences/General> dialog
+ added the <Convert to monochrome image> in the <Save bitmaps> plug-in dialog
[1.5.1.5]
- fixed bug in the <3D model> plug-in: wrong model when the image width is not
multiple to four
[1.5.1.4]
+ added a notification icon to the BatMan dialog that appears when the ROI does
not loaded
+ added in the BatMan the buttons <Import> and <Export> to load and save a
Dataset list
[1.5.1.3]
* the density histogram outputs the results text files in the comma-delineated
format (it was tab delineated)
+ added an <Intersection perimeter> in the 2D results
* fixed in the 2D analysis summary data the small diveation of Av.Obj.Ar. and
Av.Obj.Le.
The mean values of MMI(polar), Ecc, Tb.Pf and FD calculated by exclusion the
slices with zero values.
Another mean values calculated by using total number of slices.
[1.5.1.2]
- fixed bug: some 2D analysis summary data (BATMAN version) are WRONG when the
VOI is partial
[1.5.1.1]
+ added the moving of poligonal ROI (SHIFT+Left mouse button)
+ added in the ROI bar and menu two items: <Copy ROI> and <Paste ROI>. With
this command one can copy any non interpolated ROI and paste it to any image
+ added the <Image inside ROI> button in the <Profile> bar
[1.5.1.0]
+ added the <Maximal Intensity Projection> button to the <Profile> bar.
[1.5.0.4]
+ added in the <Image/Properties> dialog the button <Change> that allow to
modify the pixel size of dataset.
[1.5.0.3]
+ added the <Thickness distribution> and the <Separation distribution> items in
the <Print layout> dialog
* fixed: the wrong bottom palette colour when one change contrast and
brightness
[1.5.0.2]
+ the mouse wheel is disabled while drawing the ROI
+ added in the <Despeckle> plug-in report the number of removed speckles
[1.5.0.1]
- fixed bug: wrong 3D model when one saves a small model in the p3g-format.
(The afected models contain near 60000-130000 facets)
...................................................................................
.................
[1.5.0.0 Release]
+ added <Mean fractal dimension> to the summary of 2D analysis
* in the <3D model> plug-in the unit is fixed to voxel for the P3G and CTM
files
Version 1.4
___________________________________________________________________________________
_________________
[1.4.1.20]
- fixed bug: self-closing of the application when in the <Open file> dialog the
"Desktop" folder is selected and mouse goes over an bmp-file
[1.4.1.19]
- fixed bug: crash when load some 16-bit tiff-files
[1.4.1.18]
* Changed the way (based on perimeter/surface of objects) of the 2D/3D farctal
dimension calculation.
[1.4.1.17]
- fixed bug: the two new 3D functions (<Fractal dimension> and <Number of
objects>) do not apply the ROI
[1.4.1.16]
- fixed small bugs
[1.4.1.15]
+ added <Number of objects> to the <3D analysis>
[1.4.1.14]
+ added <Fractal dimension> to the <3D analysis>
[1.4.1.13]
- fixed bug: incorrect report of TS and BS values in the summary of 2D analysis
(non plug-in version).
+ added a <Fractal dimension> item to report of 2D analysis
[1.4.1.12]
+ added the <Hand mode> menu item in the <Image> submenu and image context menu
- fixed problem with the reported threshold levels in the 2D/3D analysis plug-
ins
[1.4.1.11]
- fixed problem with naming convention of log-file
[1.4.1.10]
+ added the indication of central point of rectangle, square, elliptic and
round ROIs
[1.4.1.9]
+ added a protractor tool to the <Image preview> window and <Shadow Projection>
window.
Press Ctrl+left button mouse to activate it. Switching/releasing a Ctrl key
when moving mouse, you can select an active side of the protractor
+ added a <Fractal dimension> to the <Processed images> bar
[1.4.1.8]
* implemented a correct <Attenuation coefficient> range for selected part of
16-bit TIF images
+ added a manual calibration of Attenuation in the <Histogram> bar
[1.4.1.7]
+ added in the 3D analysis the calculation of the 3D-centroid
+ added in the summary of 2D analysis the coorinates of 3D-centroid
+ added in 2D analysis an item "Z position"
+ added the global threshold levels to the 2D/3D text report
+ in the <ROI shrink-wrap> plug-in added an <Image copy> mode
+ added the <Attenuation coefficient> tab to the <Histogram> bar
[1.4.1.6]
* enabled a Kuwahara filter (2D/3D) in the <Smoothing> plug-in
[1.4.1.5]
- fixed bug in <Reslice model>: wrong bitmaps when the dataset images are not
square
- fixed bug in <3D-model> plug-in: a write error when a reduced dataset is
opened
* in <Preferences/Animation>, the default frame rate for both visualisation and
avi is increased from 2 to 15
* in <Preferences/Region of interest> two selectable options are hided
<Aautosave ROI> and <Copy shadow projection> and always are done by default
+ added <Reload> plug-in to reload the dataset or ROI
[1.4.1.4]
+ added 3D-filters in the <Smoothing> plug-in
+ added in tif-file a support of x and y resolution denominators
+ added in the <Individual 2D object analysis> dialog a <Note> field
+ added a scrolling of image to center an object selected in the <Individual 2D
object analysis> dialog,
if the zoom factor of an image is less than 1 the image will be displayed in
actual size
+ added in the <Print layout.../Layout item/Custom text> the button <Font> to
change a font for the user typed text
[1.4.1.3]
+ 3D-transformations added in the <Morphological operations> plug-in
* optimized the speed of the <Median> filtration in the <Smoothing> plug-in
[1.4.1.2]
+ added in the dialog <Choose Details> a button <Restore Default>
- fixed problem: a <Save bitmaps> plug-in can't create destination folder if
the source folder contains a dot (".") symbol
[1.4.1.1]
+ added in the dialog <Choose Details> buttons <Move Up>,<Move
Down>,<Show>,<Hide> and edit box <Width of column>.
- fixed problem with small ROI shifting in some datasets
[1.4.1.0]
- fixed bug: self-closing program when one browses for dataset
- fixed problem with calculation some parameters of non Skyscan images with
zero pixel size ( zero resolution is forced to 96 dpi )
+ added preservation of a condition of the <Create 3D model> dialog
- fixed bug: crashing when open a single image for 3D analysis
+ added in the <Individual 2D object analysis> dialog a <Choose Details> button
that open a dialog with the same name where one can select the details to display
for the results.
+ added in the <Preferences/Advanced> dialog a check box <Allow all users to
start the program>. (This option requires the registration authentication under
administrative account).
* removed <Marching Cubes> rendring from <Preferences/Advanced> dialog and <3D-
model> plug-in dialog to avoid Marching Cubes rendering
- fixed bug in <ROI shrink-wrap> plug-in: incorrect <Adaptive> shrink-wrapping
when the <Stretch over holes> check box is selected
+ added in the <Histogram> bar two edit boxes which allow to change of the
thresholds by text editing
+ added two buttons and menu items in the <Histogram> bar and menu. There are
the <Halftone view> and the <ROI view>
+ added an item <Apply to:> to <Despeckle> plug-in dialog and a despeckle
implementation for ROI
+ added a 3D version of the despeckle operations in the <Despeckle> plug-in
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!!!!!!!!!!!!!!!!!!!
ATTENTION !!! After one starts once this or next versions of program the start
of the older versions (less than 1.4.1.0) will require the registration
authentication.
To keep working the Ant-application one must update it to
version 2.4.2.0 or high
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!!!!!!!!!!!!!!!!!!!
[1.4.0.1]
- fixed: a P3G model origin is always centred, an unit is voxel
...................................................................................
.................
[1.4.0.0 Release]
- fixed small bugs of the versions [1.3.3.10] and [1.3.3.11]
Version 1.3
___________________________________________________________________________________
_________________
[1.3.3.11]
+ added <Tissue surface>, <Mean total crossectional tissue area> and <Mean
total crossectional tissue perimeter> in the summary of 2D analysis
+ added <Tissue perimeter> in the 2D image analysis
[1.3.3.10]
- fixed problem: when one changes view mode the scroll position of image is
changed
[1.3.3.9]
- fixed incorrect marker position of object when the image origin is in the
center of image
[1.3.3.8]
- fixed bug in the <Strech over holes> function of the <ROI shrink-wrap> plug-
in
[1.3.3.7]
+ added <Strech over holes> possibility to the <ROI shrink-wrap> plug-in
- fixed "border effect" in the <Close> transformation of the <Morphological
operations> plug-in
+ added in the <Preferences/General> an option for the default orientation of
the profile line
- fixed problem with printing by the Adobe PDF-Writer
- fixed bug in 2D analysis: in some datasets there is wrong calculation of some
object parametes
+ added an <Object Analysis> item in context menu when one presses the right
mouse button in the object
+ added a marker which shows an object (centroid) position of the selected item
of the <individual 2D analysis>
+ added <Load> and <Save> commands in the <User defined histogram intervals>
dialog
+ added the <ANT-style> item in the <Preferences/Advanced/3D surface
construction algorithm>
+ added the buton <Hand mode> in the main toolbar and item of the <View>
submenu
+ added accelerators <Alt+Home> (go to the top of the selection), <Alt+End> (go
to the bottom of the selection),
<Alt+Insert> (go to the selection reference) and <Insert> (set the
selection reference)
+ when one loads a ROI in the <Batch Manager> the dialog starts in the folder
of dataset
[1.3.3.6]
- fixed a problem with updating of input controls of <Selection dialog> when
press <Enter> button
- fixed incorrect auto ROI-file creating when <Save new dataset from ROI>
+ added <ROI shrink-wrap> plug-in
+ added the <Fill-out> mode in the <ROI shrink-wrap> plug-in
+ added the <Adaptive> mode in the <ROI shrink-wrap> plug-in
[1.3.3.5]
- fixed problem with color picker in the <Save new dataset from ROI> dialog
[1.3.3.4]
- fixed bug in <individual 2D analysis>: crash with big images
[1.3.3.3]
+ added the colour picker to the <Save new dataset from ROI> dialog
+ added the <Single image>/<Volume of interest> selector in the <Save histogram
of distribution> dialog
[1.3.3.2]
+ added the three buttons (<Image view>/<Image inside ROI view>/<ROI view>) in
the <Plug-ins> bar
* redisigned the <Despeckle> plug-in dialog
+ added the area selector (<less than>/<more than>) for <Remove white/black
speckles> operation in the <Despeckle> plug-in
+ added the <Remove pores (detected by image/ROI borders)> command in the
<Despeckle> plug-in
+ added the <Remove broken pores (detected by image/ROI borders)> command in
the <Despeckle> plug-in
+ added the <Remove broken objects (detected by image/ROI borders)> command in
+ added the <Remove inner objects (detected by image/ROI borders)> command in
+ added the <Remove outer objects (detected by image/ROI borders)> command in
+ added the <Sweep> command in the <Despeckle> plug-in: find largest connected
binarised object and delete all other objects
[1.3.3.1]
+ added <Lenght distribution> menu item and tab in <Analysis> panel
+ added <Save histogram of distribution > menu item and button in <Analysis>
panel to save histograms of distribution in line-by-line text file (with comma
delimiter)
+ added <Show absolute values> menu item and button in <Analysis> panel to
display absolute values of histogram entries (# or area)
+ added <User defined histogram intervals> menu item and button in <Analysis>
panel (only for <Lenght distribution>)
+ added <Major axis-length of inertia>, <Minor axis-length of inertia> and
<Length> columns in 2D individual analysis
+ added <Mean Thickness> column in 2D individual analysis
+ added ROI transformations to <Morphological operations> plug-in
+ added the CR to the end of results line when the <2D analysis> plug-in writes
a single line-by-line text file
* 3D parameter calculations are preset to 33 marching cubes method
* increased the number of dicimal places to 3 for mean value of whole spectrum
in the <Histogram Bar>
+ added <Mean total crossectional object/bone area> and <Mean total
crossectional object/bone perimeter> to Summary 2D analysis
- fixed problem with the recognition of the inverted ROI
* increased the number of dicimal places to 5 for all parameters of the 2D and
3D reports
- fixed "empty data" problem in <3D analysis> plug-in
- fixed problem with the TBPF
[1.3.3.0]
- fixed small bug in <3D model> plug-in
+ added information about 3D surface algorithm in the summary and the line-by-
line reports of 3D analysis
+ added a menu item <Subtractive> in menu <Region of Interest>
[1.3.2.11]
+ added in <2D analysis> plug-in a possibility to write Summary results of 2D
analysis to specified line-by-line file
+ added the volume an surface calculation based on Marching Cubes 33 algorithm
(for 3D analysis plug-in as well as for CTAn)
+ added the volume an surface calculation algorithm selection (MC or MC33) to
<Preferences/Advanced> and <3D analysis> dialogs
+ added the <Subtractive ROI> button that inverts all regions of interest
* enabled <Cancel> button when load ROI. When one press this button all ROIs
will be reset to default state
[1.3.2.10]
+ added in 3d thickness/separation data report a column with a single value
representing the midpoint of thickness range
+ added <Marching Cubes 33> algorithm witch resolves ambiguous situations of
MC.
+ added in <Batch Manager> button to shut down computer when all datasets will
be processed
[1.3.2.9]
- fixed bug: <3D model> plug-in writes STL & CTM upside down models
+ added p3g-format support to <3D model> plug-in and <Create 3D-model> command
[1.3.2.8]
* <Selection> dialog goes directly to <Analytic> tab when reference level
exists
- fixed bug: when press ESC or ENTER button a contents of active bar disappears
+ added checked state for <Invert palette> button
- fixed palette problem when save new file. From now the new file will be saved
with original palette.
- fixed bug: ctm-model has no some facets at the border side of images
- fixed bug: redundant facets in stl-model when applied the Double-Time cubes
algorithm
+ added in <3D analysis> plug-in a possibility to save single text line & text
table at the same time
+ added internal <3D model> creator plug-in with MC, DTC and ANT-like
algorithms
* in the dialog box for saving a new ROI dataset the message at the bottom from
"fill outside space with white colour" was changed to "..with ambient colour".
[1.3.2.7]
+ added in <Preferences/Histogram> a button <Calibration> that open a BMD
density calibration dialog
[1.3.2.6]
- fixed small bugs
+ added a line-by-line file selection for <3D-analysis> plug-in
[1.3.2.5]
- fixed bug: wrong stereology when the ROI is selected
[1.3.2.4]
- fixed bug: wrong MIL calculation when <Cache image> flag is off
[1.3.2.3]
- fixed problem with jumping of selected item when Up/Down buttons are pressed
- fixed stereology problem
- fixed problem: default thresholding levels can self-change while batch-
processing
* removed from 2D and 3D analysis plug-ins report about thresholding
+ added an item <Summary results of 2D analysis> in <Print Layout> dialog
+ added the reference indication icon.
If dataset has not reference a selected item will be taken as reference in
<Selection dialog>.
If one does select range of images from <Direct> tab of <Selection dialog> or
change it manually from
selection sliders the reference will be removed from dataset.
* removed the button <Stop> from <Batch Manager>.
+ added ROI filename in report file
+ added dialog for <2D analysis> plug-in to modify report style
+ added progress bar for individual tasks in <Batch Manager>
- fixed bug: button <Properties> in <Batch Manager> sometimes do not shows the
right information
+ added "Crossectional thickness" in the summary data for 2d line-by line
analysis
+ added support of the registration password that will be supplied with new
lic-files (disabled!)
* evaluation version limits the number of datasets for processing in batch mode
- fixed problem with the saving of dataset (binary, resampled and images from
roi) with the same prefix name to another folder
[1.3.2.2]
- fixed an unexpected dataset reload when change a view mode
* some small cosmetic changements in results layout
[1.3.2.1]
+ added in submenu <View> a command <Selection...> that opens dialog for VOI
selection
+ added in <Selection> dialog the button <Apply> to apply the selection without
a dialog closing
+ added the <Analytic> tab to the <Selection> dialog to apply a reference
selection
+ added the menu item <Selection reference> in a context menu of the <Dataset>
bar to apply a reference selection
...................................................................................
.................
[1.3.2.0 Release]
* small cosmetic changements
[1.3.1.9]
- fixed bug: <Batch manager> crashes when calls some not existing now resources
* when in <Custom processing> or <Batch Manager> output/report files locked by
enother programs (like MS Excel),
program tryes to create enumerated files like dataset(1).ctan.txt and if it's
not possible (protected folder or CD-drive)
writes these files in "My Documents/CTAn" folder. The same rules works for
Save plug-in.
[1.3.1.8]
+ added Tb.N(rod) and Tb.Sp(rod) calculations and changed correction factors
for Tb.Th (2/bs/bv) and Tb.Dm (4/bs/bv)
[1.3.1.7]
* in 2D results updated a mean area, added a mean size and a mean porosity
* to indicate an equator ROI in a cube and sphere VOI all ROIs except for
equator change its type (cube->rectangle,round->ellipse)
- fixed bug: wrong a total object surface in Summary 2D data
* removed 3D surface area factor ( see comments for version [1.2.22.0] )
- fixed bug: crashing when export to avi a 24-bit bitmap
+ implemented Nomenclature selection in <Preferences/General>
- fixed bug: 3D plugin in dialog (non batch) mode takes original images (not
from previous plug-in)
- fixed bug: <Custom processing> not reloads ROIs after they were changed
- fixed bug: <Custom processing> sometimes disables the <restore dataset>
button when a dataset was changed
- fixed bug: when a volume of objects = 0 the 3D calculation stops
* <Custom processing> writes report and results file called prefix.ctan.log and
prefix.ctan.txt,
* <Batch Manager> writes report and results file called prefix.batman.log and
prefix.batman.txt
[1.3.1.6]
- fixed bug: CTAn falls after a 3D-model creation and CTVol starting
+ added a visualisation of resampled area and an indication of image position
inside this area
* CTM-file has a centred model with pixel unit
- Histogram menu is extended by commands whitch was accesible bofore only from
buttons from Histogram bar
- fixed bug: <Save images from ROI> saves wrong palette
* a text file with histogram has new column <Selected %>
- fixed some small problems with visualisaton
[1.3.1.5]
* updated saving thresholded binary images (old files with the same prefix-name
were not removed before writing new files)
+ implemented image reslicing and saving new dataset to disk
+ implemented DA calculations based on model surface (but it is disabled at
moment)
+ in the <Image Properties> dialog when a mouse cursor goes over very long
pathname the tooltip appears
[1.3.1.4]
* the button <Analysis/Area histogram> is enabled only for size distribution
histogram
+ implemented Double-Time Cubes rendering algorithm (<Preferences/Advanced/3D
surface construction algorithm>) which produces two time less facets but with loss
of an exactitude of evaluations.
For this reason the volume calculations continue to be carried out on
Marching Cubes algorithm
+ there is an possibility to choose adaptive (in um) or fixed (in pixels) line
spacing for MIL/DA calculations in dialog <Preferences/Advanced/MIL line spacing>
[1.3.1.3]
+ implemented an image caching to speedup read operations (requires an extra
disk space)
[1.3.1.2]
+ implemented DA calculations inside sphere circumscribed around a ROI/VOI
* !!! for the moment line spacing in DA calculations fixed in 5 pixels
[1.3.1.1]
+ implemented DA calculations inside bounded ROI/VOI cube
[1.3.1.0]
+ possibility to open an autosaved report file in 3D-analysis by pressing the
information icon
* <Gaussian blur> plug-in renamed to <Smoothing>
+ added to <Smoothing> plug-in median, uniform (mean) and Kuwahara smoothings
- fixed problem with size adjustment of docked panels
* MIL/anisotropy analysis returned to original method of a sphere enclosing the
whole selected ROI
+ added a stereology analysis report only in main program (this functionality
must be activated)
...................................................................................
.................
[1.3.0.5 Release]
- fixed bug: diagonal distortion of images in a plugin of morphological
operations
[1.3.0.4]
+ selection of the new added dataset in BatMan
- fixed bug: the results of 2d-analysis plugin had the reverse order of image
numbers
- fixed bug: incorect (sometimes) calculating of Mean trabecular pattern factor
[1.3.0.3]
- fixed image align problem in internal plug-ins
[1.3.0.2]
* removed unused options from <Preferences/Tools>
- fixed bug in BMD preview
+ added BMD calibration in <Preferences/Histogram>
+ implemented binary images support
+ added a checking of single plug-in before execution
- fixed some small problems with reading TIF-files
+ added Hounsfield density range calibration in <Histogram> window
[1.3.0.1]
* removed tab <Preferences/Histogram> and added fast density unit switching in
Histogram window
+ added accelerators for dataset tabs:
Alt+1 - Raw images
Alt+2 - Regions of interest
Alt+3 - Binary images
Alt+4 - Processed images
Alt+5 - Custom processing
+ added possibility to copy shadow projection, when save new dataset from ROI
+ added a checking of plug-ins task queue before execution
[1.3.0.0]
+ added plug-ins managment
+ added batch processing
+ added selection frame rate for visualization and video-export functions
- fixed bug: wrong CTM-model position
+ CTM and STL files have model unit taken from program preferences
+ added possibility to autosave ROI, when save new dataset from ROI (position
of new ROIs depends of new size of images)
+ added a selection of intencity range from 16-bits TIF-files
+ added support for new BMP and TIF formats, contained HU-information
+ added in histogram window more statistics about grey/HU values of all
selected voxels:
total number of voxels, standard deviation, standard error of mean, 95%
confidence limits (minimum and maximum)
+ added build-in <Threshold> plug-in
+ added build-in <Save bitmaps> plug-in
+ added build-in <2D analysis> plug-in
+ added build-in <3D analysis> plug-in
+ added build-in <Gaussian blur> plug-in
+ added build-in <Morphological operations> plug-in
+ added build-in <Despeckle> plug-in
Version 1.2
___________________________________________________________________________________
________________
[1.2.35.3]
- fixed bug when evaluation key does not work under subversions of program
[1.2.35.2]
+ added in prefereces the possibility of a choice: resize or not images when
save new dataset from ROI
[1.2.35.1]
- fixed problem when program not started under non-administrative profile
[1.2.35.0 Release]
+ added a calculation of Summary 2D data when save results of 2D analysis
- fixed problem with permanent recalculation of histograms when after ROI
modification one changes VOI selection
- fixed bug in version 1.2.34 with incorrect loading ROI from file
[1.2.34.0]
+ implemented Demo, Evaluation and Full execution mode
[1.2.33.0]
+ the WHEEL or UP / DOWN keys change position inside dataset
+ the WHEEL + SHIFT or LEFT / RIGHT keys zoom an image
+ all sliders change his own position by one line when used mouse wheel
- fixed bug: incorrect interpolation when an empty region drawn on next slice
after nonempty ROI
- fixed bug inside the <Selection VOI> dialog
+ added a calculation of histogram average value from selected threshold levels
+ added a showing histogram values in preffered units
* all opening / saving operations don't change default dataset directory
- fixed bug: a ROI area was calculated by the different algorithm that an image
area
+ added possibility to build a cubic/sherical volume of interest from a
square/circle ROI taken as equator shape.
This action also changes the volume of interest selection according figure
dimension.
* corrected a total porosity calculation in <2D image analysis>: the pores
inside selected oblect but outside of ROI are ignored
- fixed bug: sometimes the ROI loses his position inside dataset
[1.2.32.0]
* new expiration time ( 15 october of 2003 )
+ added in <Individual 2D analysis> and <3D analysis> a possibility to save
results as HTML-file
+ added indication of the start point of profile line
+ possibility to start / stop play images by pressing SPACE button
+ possibility to change the play direction by pressing TAB button
+ possibility to return at the last edited ROI by pressing BACKSPACE button
- fixed incorect ROI-file loading
[1.2.31.0]
* new expiration time ( 1 october of 2003 )
* some fixes of calculation moments of inertia in <Individual 2D analysis>
+ added in <Individual 2D analysis> calculation of porosity
+ added in 2D image analysis calculation of:
- moments of inertia XX and YY (about centroid of image);
- polar moment of inertia (about centroid of image);
- product of inertia (about centroid of image);
- porosity
- orientation
- eccentricity
+ added in <2D image analysis> a Porosity distribution histogram
+ added indication of VOI when projection image is selected in the print layout
+ added in <Selection dialog> indication of VOI selection in custom units
+ added possibility to auto save 3D analysis results
+ added in ROI-file information about VOI and binary selection
[1.2.30.0]
+ added in <Individual 2D analysis> calculation of:
- moments of inertia XX and YY (about centroid of object);
- polar moment of inertia (about centroid of object);
- product of inertia (about centroid of object).
+ added a calculation of image centroid in 2D image analysis
+ added a 2 pixel thick extra border around the ROI dataset in <Save binary
selection> or <Save dataset from ROI>
- fixed bug: program crashed when opens <Histogram bar> and it has not enough
disk space
[1.2.29.0]
+ added warning when overwrite an existing dataset from ROI
+ added warning when overwrite an existing dataset from binary selection
* removed warning "Do you want to replace file?" when <Append to file> check
box is selected
+ <Save binary selection> writes images only from
+ <Save dataset from ROI> writes images only from maximal ROI bounding
rectangle inside VOI
+ added histogram preview in Hounsfield Units whitch defined in ..._cfg.txt and
..._rec.txt
- fixed bug in extent calculation
[1.2.28.0]
- fixed bug: default ROI is always square after reset ROI
- fixed bug: wrong shear image when cuted rarefied dataset
* items inside list box does not scrolled while play dataset and just after the
stop it scrolls to be sure that selected item is visible
[1.2.27.1]
* ranges of thickness shifted down by pixel
[1.2.27.0]
+ jumping between edited ROI levels by pressing <+>/<->
* renamed check box in <Save new dataset from ROI> ("solid colour" changed by
"white colour")
* smaler increments for logarithmic histogram curve
* removed excess spaces between items in 2D text report
* the reference of selected image always visible in dataset window
- fixed bug: extra lines in view menu
* implemented canceling open dataset operation
+ display ROI dimensions in status bar
+ coloured icons for ROI
- fixed bug: not stored pixel size in Y-dimension
* new version of thickness calculation
[1.2.26.0]
+ recoded DA calculations
[1.2.25.0]
+ possibility to edit path of 3D-visualisation program
+ added full path item in properties dialog
+ added pixel size in 2D and 3D results
+ reset ROI command is added
+ logarithm histogram scale
[1.2.24.0]
* corrected version of trabecular thickness calculation
+ added expiration time ( 1 september of 2003 )
[1.2.23.0]
+ added <Profile bar> to preview image colour profile
+ added <Cut model> dialog in <Profile bar> to cut model inside selected VOI by
profile line and save result image to bmp-file
+ added possibilty to fill outside ROI space with solid colour when save ROI
selection as new dataset
[1.2.22.0]
* surface area multiplied by 0.95
* removed empty lines from text file output
* show BA/TA and BV/TV as "percent value"
[1.2.21.0]
- fixed bug: sometimes buttons in <Individual 2D analysis> are hidden
- flicking screen while load ROI from file is avoid
[1.2.20.0]
- fixed incorrect font size displaying in <Print layout> dialog
+ added Skyscan/custom logo in <Print layout> dialog
+ page header with program version is added in <Print layout> dialog
- bug in STL file export function is fixed
- bug in SMI calculation is fixed
+ export model to CTM file with smoothed normals is added
+ two levels of model resolution is implemented in CTM file
+ implemented canceling 3D model creation
+ default filename to save 2D slice-by-slice data is ending by _2D.txt
- fixed bug: if images has depth else than 8-bits AVI-export didn't work
+ new command in <3D analysis> dialog allow to save results line by line
+ added <Custom text> item in <Print layout> dialog
[1.2.19.0]
- fixed bug: program crashes when droping file to shortcut
+ added print layout dialog. It is optimized for page size less than 350x350 mm
( else it will be drawing problem ).
* changed output order 3D results
+ added DA calculation by two ways: max_eigenvalue / min_eigenvalue and ( 1 -
min_eigenvalue / max_eigenvalue )
* output eugenvalues normalized by 1.0
[1.2.18.0]
+ implemented canceling accumulative histogram calculation
+ measuring distances in image and projection
* some modifications in user interface:
- <Options> renamed to <Preferences> and placed in submenu <File>;
- menu item <Temp folder> moved to <Preferences\Directories> dialog;
- ROI type buttons organised like one drop down button;
- fixed painting problems during tooltips movement
[1.2.17.0]
- fixed incorrect showing some controls under non XP-style desktop themes
* shade color is changed in projection image view
+ real time displaying during modification of ROI dimensions ( bounding
rectangle ) or position ( offset )
+ movie saving with or without compression by installed codecs
- fixed bug: wrong drawing position of poligonal ROI in scrolling window
* VOI dialog has in input Z-positions
[1.2.16.0]
+ implemented displaying ROI bounding rectangle
* ROI box does not shrink after single mouse click on image
+ image background color corresponds to state of selection
+ square and round ROI are added
+ histogram saving as text file is added
+ show selections in rulers
[1.2.15.0]
* new look of ROI preview when displaying binarised dataset
+ saving a new dataset from VOI+ROI selection as grayscale bmp-files is added
+ added tabs for fast switching distribution histograms
* changed look of distribution histograms
+ scales for distribution histograms is added
+ scales for shadow projection is added
- fixed bug of virtual memory usage
+ added tabs for fast switching grey levels histograms
+ scales for grey levels histograms is added
+ implemented image selection from shadow projection window
+ measurements in shadow projection are added
[1.2.14.0]
- fixed bug in MIL calculation
+ SMI calculation is added
+ the VOI selection dialog is added
+ histogram average value calculation is added
+ columns with pixel size and image size are added in raw images preview
- fixed bug in TBPf calculations
+ implemented ROI preview when displaying binarised dataset
+ Extent calculation is added in <Individual 2D object analysis>
+ Eccentricity calculation is added in <Individual 2D object analysis>
[1.2.13.0]
+ the Euler number is added in total and individual 2D analysis
[1.2.12.0]
+ the preliminary version of MIL calculations is added
[1.2.11.0]
+ trabecular number (Tb.N.) and percent plate (P.Pl) calculation are added in
3D analysis
* the choice of a grid for morphological operations is removed from options
* thickness calculations are more precise
- fixed bug: wrong original palette preview
* main window doesn't hide in calculation time
+ <Individual 2D object analysis> and <3D analysis> buttons are added in
toolbar
[1.2.10.0]
* small corrections in output forms like: ROI->VOI, Total Volume->Volume of
objects
+ the choice of a grid for morphological operations and evaluations based on
them is added
+ indication of cursor position
+ adaptive parameter display precision
[1.2.9.0]
+ unit and origin choice possibility
- some found bugs in thickness calculation fixed
+ speedup thickness calculation ( depends from ROI )
[1.2.8.0]
* origin of 3D model shifted to position: size_of_x/2, size_of_y/2, 0
+ command line for 3D Visualization program has flag with pixel size in um:
-p20.5
+ possibility to create 3D model from resampled images with original dimensions
[1.2.7.0]
* histogram recalculation applies only in accumulative (from selection or from
dataset) modes
* animation shows images in selection range
- fixed bug: sometimes in interpolated regions there are small holes
+ possibility to launch 3D Visualization software from specified path
[1.2.6.0]
+ possibility to interrupt 3D calculations
* memory usage reduced in thickness calculation
[1.2.5.0]
+ new XP-style look (only under Windows XP)
- fixed potential memory leaks in <Individual 2D object analysis> & <3D
analysis> dialogs
( stream class <fstream.h> changed by stream i/o rutines <stdio.h> );
- fixed bug: reenter to <Individual 2D object analysis> dialog does not refresh
all information;
* from now <Save binary selection> dialog writes files from selected images;
* writing results of 2D calculations from selected images to file (<Save
calculation results> dialog)
[1.2.4.0]
+ progress indication to <Save binary selection> dialog;
+ two-directional sorting to <Individual 2D object analysis> dialog;
+ deletion data from selection to <Individual 2D object analysis> dialog;
* removed Hasp-key support

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