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Urine volatile organic compounds as biomarkers for minimal change type nephrotic
syndrome
Desheng Liu, Nana Zhao, Mingao Wang, Xin Pi, Yue Feng, Yue Wang, Hongshuang
Tong, Lin Zhu, Changsong Wang, Enyou Li
PII: S0006-291X(17)32572-X
DOI: 10.1016/j.bbrc.2017.12.164
Reference: YBBRC 39164
Please cite this article as: D. Liu, N. Zhao, M. Wang, X. Pi, Y. Feng, Y. Wang, H. Tong, L. Zhu, C. Wang,
E. Li, Urine volatile organic compounds as biomarkers for minimal change type nephrotic syndrome,
Biochemical and Biophysical Research Communications (2018), doi: 10.1016/j.bbrc.2017.12.164.
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Urine Volatile Organic Compounds as Biomarkers for Minimal Change type Nephrotic
Syndrome
Desheng Liu2, Nana Zhao2, Mingao Wang3, Xin Pi2, Yue Feng1, Yue Wang1,Hongshuang Tong1, Lin
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Department of Critical Care Medicine, the Third Affiliated Hospital of Harbin Medical University,
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Harbin, China.
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Department of Anesthesiology, the First Affiliated Hospital of Harbin Medical University, Harbin,
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China
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Department of Nephrology, the First Affiliated Hospital of Harbin Medical University, Harbin, China
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*Corresponding authors:
Department of Critical Care Medicine, the Third Affiliated Hospital of Harbin Medical University,
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Harbin, China.
Department of Anesthesiology, the First Affiliated Hospital of Harbin Medical University, Harbin,
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China.
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Yue Feng. E-mail: 1175635758@qq.com
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Yue Wang. E-mail: 1206743386@qq.com
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Lin Zhu. E-mail: 370774491@qq.com
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Changsong Wang. E-mail: changsongwang@aliyun.com
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Abstract
Urinary volatile organic compounds (VOCs) profiling has recently received considerable attention
because it can be obtained noninvasively and conveniently while it can be successfully used in a
variety of diseases and can provide unique biomarkers. The aim of current study was to investigate
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potential biomarkers between minimal change type nephrotic syndrome (MCNS) and normal. Urinary
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samples were collected from 38 minimal change type nephrotic syndrome patients and 15 healthy
controls. Solid phase microextraction (SPME) and chromatography– mass spectrometry (GC-MS) were
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used to analysis the urinary metabolites. To deal with the final data, the statistical methods principal
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component analysis (PCA) and orthogonal partial least-squares discriminant analysis (OPLSDA) were
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performed. Six specific VOC biomarkers were present at abnormal levels in the urine of MCNS
salt; 1-butyne, 3,3-dimethyl-; diisopropylamine; and 4-heptanone. These biomarkers may be useful as a
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new diagnostic method and for monitoring the prognosis for MCNS patients.
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Keywords Minimal change type nephrotic syndrome, volatile organic compounds, Solid-Phase
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List of abbreviations
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VIP Variable importance in the projection
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SD Standard deviation
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ALB Plasma albumin
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Introduction
Minimal change type nephrotic syndrome (MCNS) is the most common cause of nephrotic
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syndrome in children, accounting for 70% and 25% of primary nephrotic syndromes in children and
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adults, respectively[1,2]. The disease has higher incidence in boys and is inversely proportional to age,
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allergens [5]. The pathological types and clinical features of nephrotic syndrome determine its
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prognosis and treatment. MCNS is a pathological diagnosis, often having typical clinical
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hyperlipidemia. Most people are sensitive to glucocorticoid therapy for MCNS, and approximately
60% of patients will relapse [1]. To reduce recurrence, a combination of glucocorticoids and cytotoxic
agent therapy has been adopted in China and abroad in recent years.
MCNS diagnosis mainly relies on clinical manifestations and laboratory test results, the
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confirmation of which also relies on the pathological diagnosis of renal biopsy specimens. It is
necessary for children who are glucocorticoid resistant or dependent and adults with MCNS to confirm
their diagnosis and to guide the treatment and prognosis via renal biopsy. However, the technology is
costly, invasive and prone to cause complications; it is absolutely contraindicated in cases of significant
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bleeding tendency, severe hypertension, solitary kidney, small kidney, psychosis or non-cooperative
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patients [6,7]. In addition, if a sufficient tissue specimen is not available, the pathological diagnosis of
renal biopsy may not be able to provide an accurate diagnosis [8]. Therefore, renal biopsy has
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limitations, and multiple punctures are not applicable, factors that restrict its clinical applications and
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the feasibility of patient follow-up. Thus, it is necessary to identify a new diagnostic technique that is
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precise, non-invasive, and able to continuously monitor the disease progression and the response to
Recently, a growing number of researchers have become dedicated to the research of urinary
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metabonomics, including VOC profiling and urinary non-volatile metabolic profiles. In particular,
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urinary levels of nucleosides as biomarkers of cancers have already been applied to the identification of
cases of leukemia [9], hepatocellular carcinoma [10], colorectal cancer [11], and breast cancer [12],
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which are not associated with patient age or gender. In addition, Vanessa Pérez et al. [13] proposed that
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urinary peptide profiling, as a type of urinary metabonomics, could differentiate minimal change
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disease (MCD) and primary focal segmental glomerulosclerosis (FSGS), which are also not associated
Notably, urinary VOC profiling has recently received considerable attention because it is an
ideal source of biomarkers and can be obtained noninvasively and conveniently. In fact, urinary VOC
profiling can be successfully used in a variety of diseases and can provide unique biomarkers. Wu et al.
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[14].confirmed that the pattern of urinary VOCs in patients with hepatocellular carcinoma was different
from those of healthy controls. Jobu et al. [15] demonstrated that urinary VOC metabolites in bladder
cancer patients were more sensitive than urine cytology. CL Silva et al. [16] concluded that different
urinary volatile metabolomic profiles for healthy people and cancer patients were successfully
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recognized. Therefore, based on the above, we postulated that kidney disease can affect the
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composition and content of urinary VOCs. However, it is still unknown whether urinary VOC profiling
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We assumed that, compared with healthy subjects, MCNS patients might produce potential
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urinary VOCs. Our main goals of this study involved focusing on urinary VOC profiling of MCNS to
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improve the diagnosis of MCNS patients.
Statistical Analysis
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Normalized data were exported to SIMCA-p 11.5 platform for principal component analysis (PCA) and
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orthogonal partial least-squares discriminant analysis (OPLSDA) after being performed total area
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cross-validation in the SIMCA-P software, and performed permutation tests using 100 iterations to
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further validate the supervised model. In addition, the nonparametric Kruskal–Wallis rank sum test was
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performed for each metabolite. The potential metabolic biomarkers were selected based on variable
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importance in the projection (VIP) values calculated from the OPLSDA model of 1.2. In this study, the
Human Subjects
The present experiments were conducted in accordance with the Declaration of Helsinki. The
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protocol in this study was approved by the Ethics Committee at the First Affiliated Hospital of Harbin
Medical University (No.201314), and written informed consent was obtained from patients prior to
study enrollment. This study was conducted between Dec. 2013 and Oct. 2014 at the Department of
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Included in this study were men between 16 and 65, and women between 20 and 61 years of age
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identified as ASA I and II individuals and scheduled for renal biopsy. In addition to the group of kidney
disease patients, this study also examined healthy volunteers, whose inclusion criterion were the
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absence of a history of kidney diseases and urinary infection, renal function were normal at the same
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time. This study involved a total of 53 individuals, including 38 individuals with MCNS and 15 healthy
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volunteers. The demographic characteristics are summarized in Table 1.
As detailed in Table 1, the normal control group involved 15 patients. The 38 MsPGN patients
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who were selected included 21 males and 17 females. The mean age of the MsPGN patients was 33 y,
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with a standard deviation (SD) of 13.8 y, and 15 of these patients were smokers.
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Urine Collection.
Portions of midstream urine samples of patients without breakfast were collected severally in the
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morning before analysis. All samples were analyzed within 1h after they were collected.
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Solid-Phase Microextraction(SPME).
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thickness was purchased from Supelco (Bellefonte, USA). The SPME fiber was inserted into the vial
and exposed to the gaseous sample for 20 min at 40 . Subsequently, the desorption of volatiles
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Analysis was performed on a GC/MS (Shimadzu GC-MS QP 2010, Shimadzu, Japan) equipped
with a DB-5MS (length 30 m *ID 0.250*film thickness 0.25 um; Agilent Technologies, USA) plot
column. Injections were performed in the splitless mode. The temperature of injector was 200 . The
flow rate of the helium (99.999%) carrier gas was kept constant at 2 ml min-1. The column temperature
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was held at 40 for 1 min to concentrate the hydrocarbons at the head of the column and then
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increased by 5 for 1 min, then ramped 15 . The MS analyses were
performed in full-scan mode, using a scan range from 35–350 amu. The ion source was maintained at
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230 , and an ionization energy of 70 eV was used for each measurement.
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Extraction and Pretreatment of the GC/MS Raw Data.
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Raw GC/MS data were converted into CDF format (NetCDF) files using Shimadzu GCMS
Postrun Analysis software and subsequently processed using the XCMS toolbox (http://metlin.scripps.
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edu/download/). The XCMS parameters consisted of the default settings with the following exceptions:
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plottype=‘‘mdevden’’); and a bandwidth of eight for first grouping command and four for the second
grouping command. The data set of the aligned mass ions was exported from XCMS and could be
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further processed using Microsoft Excel to normalize the data prior to multivariate analyses.
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Results
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Additionally, the VOCs in the exhaled breath of 38 patients with MCNS and 15 healthy subjects
were analyzed using GC-MS. Between the patients with MCNS and the healthy subjects, we obtained
two-dimensional PCA score plots using 215 parameters, with good separation tendency (Figure 1). A
PLS-DA score plot was then used to separate these two groups with three components (R2X=0.362,
R2Y=0.837, and Q2=0.697) (Figure 2). A validation plot obtained from 100 permutation tests revealed
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that all R2 and Q2 values calculated from the permutated data were lower than the original values
(Figure 3). All VIP values of the examined factors in either the PLS-DA model or OSC-PLS-DA model
were calculated. The distinct metabolic biomarkers were selected based on the standard of a VIP value
greater than 1.2 using the NIST 11 database with a similarity threshold of 75% (Tables 2).
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Discussion
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In a previous study, Solid-Phase MicroExtraction (SPME), a powerful, reliable and selective
technique, was applied to the analysis of urinary VOCs and was combined with GC-MS [16,17]. Based
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on this advantage, our study elucidated potential biomarkers of urinary metabolomics in MCNS
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patients using SPME-GC-MS and multivariate data analysis.
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VOCs are emitted by several biological fluids (e.g., urine, blood) and tissues (e.g., lungs, bowels).
Urine is a promising source of volatile markers due to the kidneys’ function of preconcentration. Indeed,
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approximately 230 types of urinary volatiles have been detected and identified in human urine [17-20] .
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These volatiles include pyrroles, ketones, hydrocarbons, aldehydes, terpenes, furans, and heterocyclic
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and sulfur compounds. Currently, a large number of trials have primarily focused on the biomarkers of
urinary metabolomics (e.g., VOCs) for many diseases, such as detecting urinary tract infections [21]
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and colorectal cancer [22], monitoring lung cancer development [23], differentiating pathological types
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of lung cancer [24], and discriminating tuberculosis patients from healthy subjects [25]. A previous
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study differentiated glomerular kidney disease patients and healthy subjects by urinary peptides [26].
However, thus far, relatively few studies have investigated the urinary VOCs in MCNS.
In our study, different urinary volatile profiles for healthy human and MCNS patients were
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with healthy subjects, these specific VOC biomarkers were present at abnormal levels in the urine of
MCNS patients.
Our results revealed that 4-heptanone, a type of ketone, exhibited a decreasing concentration trend
in MCNS patients. In fact, there were relatively abundant ketones in human urine [18,20,27] . Human
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breath, blood and urine contained a major ketone, acetone (2-propanone). Ketones can originate from
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exogenous sources and the decarboxylation of oxo-acids[18]. Perbellini et al. confirmed that
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hepatocytes from acetoacetate during the decarboxylation of excess acetyl–CoA in healthy humans[29].
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A previous study demonstrated that 4-heptanone levels were increased in the blood and breath of
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end-stage renal disease patients[30]. In addition, Hans Gunther Wahl et al. found that 4-heptanone was
significantly elevated in the plasma of hemodialysis patients compared with controls[31]. Therefore,
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we speculate that any impairment of kidney function may reduce the filtration of 4-heptanone, which is
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consistent with the study of H. M. LIEBICH [32]. The decreasing concentration trend of 4-heptanone
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detected in the urine of the MCNS patients suggests that it is difficult for MCNS patients to filter
4-heptanone through the kidney’s glomerulus, which results in 4-heptanone remaining in blood and
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breath at increased levels. However, the mechanism of this phenomenon in MCNS patients is unclear
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One heterocyclic compound, pyrrole, also exhibited a decreasing concentration trend in MCNS
patients. It is still unclear how pyrroles are produced in the human body and appear in the urine.
Jackson et al. found that endogenous pyrroles can form in the central nervous system by the
metabolism of amino sugars and N-acetylneuraminic acid [33]. Additionally, endogenous pyrroles are
by-products in the synthesis process of porphyrin and bile pigment and are oxidation products of
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hemopyrrole and bilirubin [34]. Urine pyrroles can also be provided exogenously in beverages and
meat [35]. Hence, in our study, to avoid the influence of exogenous factors on urinary VOCs, the
middle portions of the early morning fasting urine of normal subjects and MCNS patients, both of
whom were subjected to more than eight hours of fasting, were used. However, it is still unclear which
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endogenous factors gave rise to the reduced urinary VOCs in the MCNS patients.
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Whatever the interaction mechanism, the significant decrease in pyrrole concentration indicates
that pyrrole is a potential biomarker for distinguishing the differences between normal subjects and
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MCNS patients.
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There was a decrease in urinary excretion of trans-2,2-Dimethyl-4-Decene, which is an olefin, in
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the MCNS groups. We found no reports on trans-2,2-Dimethyl-4-Decene in urinary samples. However,
biosynthesis[36-38] and is also a olefin. Isoprene is the major hydrocarbon present in exhaled breath
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and blood [39,40]. We postulated that the origin of trans-2,2-Dimethyl-4-Decene is similar to that of
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isoprene. In addition, squalene, another olefin, is a cholesterol precursor and can form some VOCs by
peroxidation [41]. The cause of MCNS is unknown, but the disease may be preceded by viral infection,
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allergic reactions, or recent immunizations [1]. Therefore, it may be speculated that MCNS could be
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Three other decreased biomarkers, Carbamic acid, monoammonium salt; 1-Butyne, 3, 3-dimethyl-;
and Diisopropylamine, were not found in the literature as biomarkers in urinary samples. Further
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Compared with healthy subjects, the unique VOC metabolites are present at reduced
concentrations in the body of MCNS patients, suggesting that MCNS patients have a unique VOC
profile. This profile may be useful as a diagnostic assay and for monitoring the prognosis in MCNS
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patients.
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Funding This work was supported by grants from the National Natural Science Foundation of China
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(No.81402462).
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Authors' Contributions EL and CSW have provided the conception and design. DSL and DW have
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been involved in drafting the manuscript. NNZ, MAW, XP, YF, YW, HST and LZ performed samples
collection and data analysis. All authors have read and given final approval of the version to be
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published.
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Competing interests All authors declare that they have no conflict of interest.
Ethical approval Authors state that they have obtained appropriate institutional review board approval
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or have followed the principles outlined in the Declaration of Helsinki for all human or animal
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experimental investigations. In addition, for investigations involving human subjects, informed consent
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Table 2 Related metabolites that exist at abnormal levels in the urine from MCNS patients.
Figure legends
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Table 1
Normal MCNS
subjects(n) 15 38
age 35(7.6) 33(13.8)
male 7 21
female 8 17
smokers(n) 3 15
SCR(umol/L) 60.6(8.4) 73.0(29.5)
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ALB(g) 47.9(4.7) 22.1(7.3)
24h urine protein (g) 0.06(0.04) 3.8(2.1)
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Table 2
Potential biomarker RT p-value FC VIP
4-Decene, 2,2-dimethyl-, (E)- 843.41 0.002069 2.663267 1.5469
Pyrrole 189.02 0.000022 2.925238 3.55659
Carbamic acid, monoammonium salt 71.66 0.012750 2.281669 9.64736
1-Butyne, 3,3-dimethyl- 195.17 0.017817 1.515409 3.13792
Diisopropylamine 89.68 0.018791 1.678709 1.27765
4-Heptanone 333.48 0.000128 2.394785 4.87288
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Highlights
1、Compared with healthy subjects, the unique VOC metabolites are present at
reduced concentrations in the body of MCNS patients, suggesting that MCNS patients
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2、These biomarkers may be useful as a new diagnostic method and for monitoring the
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prognosis for MCNS patients.
3、These biomarkers may be useful as a new diagnostic method and for monitoring the
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prognosis for MCNS patients.
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