Loci used in Other Name given Chromosomal Type of sequence (Repeat sequence)

CODIS location
§ CSF1PO CSF Chromosome – [AGAT]
5 – around
149 Mb
§ FGA FIBRA Chromosome –
4 – around [TTTC]3TTTTTTCT[CTTT]nCTCC[TTCC]2
156 Mb
§ THO1 HUMTH01 Chromosome – [AATG] , [TCAT]
11 – around 2
Mb
§ TPOX hTPO Chromosome – [AATG]
2 – around 1
Mb
§ VWA VWA31A Chromosome – [AGAT], [TCTA] , [TCTG],
12 – around [TCCA]
20 Mb
§ D3S1358 Chromosome – [AGAT], [TCTA]
3 – around 45
Mb
§ D5S818 D5 Chromosome – [AGAT]
5 – around
123 Mb
§ D7S820 D7 Chromosome – [GATA]
7 – around 83
Mb
§ D8S1179 D6S502 Chromosome – [TATC]
8 – around
125 Mb
§ D13S317 D13 Chromosome – [GATA], [TATC]
13 – around
80 Mb
§ D16S539 D16 Chromosome – [GATA]
16 – around
86 Mb
§ D18S51 D18 Chromosome – [GAAA]
18 – around
59 Mb
§ D21S11 Chromosome – [TCTA], [TCTG]
21 – around
19 Mb
§ D1S1656 UniSTS: 58809 Chromosome -[TAGA]n[TGA]0-1[TAGA]n[TAGG]0-1[TG]5
1 - 228.972
Mb
§ D2S441 CHLC.GATA72A05 Chromosome - [TCTA]
2-
68,213,613 bp
§ D2S1338 UniSTS: 30509 Chromosome - [TGCC]n[TTCC]n
2 - 218.705
Mb
§ D10S1248 CHLC.GGAA23C05 Chromosome -[GGAA]n
10 -
130,566,908
bp
§ D12S391 CHLC.GATA 11 Chromosome -[AGAT]8-17[AGAC]6-10[AGAT]0-1
HO8. `12

§ D19S433 CHLC.GGAA2A03 Chromosome -

19 -35.109 (AAGG)(AAAG)(AAGG)(TAGG)[AAGG]n
Mb
§ D22S1045 CHLC.ATA37D06 Chromosome - [ATT]n
22 -
35,779,368 bp
Answer the following question on loci used in DNA profiling; this assignment
will be due at the start of lecture in next week.

1. Write out the information for the 20 loci used in CODIS (Set up a table with
their names, chromosomal location, and type of sequence (what is the repeat –
the actual letters) (20 marks)

http://strbase.nist.gov/str_fact.htm