Beruflich Dokumente
Kultur Dokumente
Genetic variability of 95 isolates of Beauveria bassiana from different geographical regions and hosts was assessed using
RAPDs and ITS-RFLP molecular markers in order to characterize its genetic variability. Clusterings were obtained
using UPGMA and Principal Coordinates Analysis. Four groups were identified with RAPDs. A 930 bp fragment was
amplified with primers ITS1 and PN16, and polymorphisms were observed with AluI and MspI, generating two main clusters.
Results indicate low genetic variability present in the Colombian B. bassiana population, no association to host type or
geographic locality, and a population structure that is not clonal. This characterization sets criteria for determination of
bio-insecticide potentiality, introduction of foreign strains and improvement of entomopathogens within an IPM program.
used to determine the population structure of this ento- CCGAGCTG) ; OPF01 (5k-ACGGATCCTG) ; OPC20
mopathogen and provide criteria to improve the cur- (5k-ACTTCGCCAC); and OPX07 (5k-GAGCGAG-
rent strategies for use in an IPM programme. GCT). PCR reactions were carried out in 500 ml
microcentrifuge tubes with a total volume of 25 ml
containing 0.2 mM of each dNTP, 0.8 mM of the primer,
MATERIALS AND METHODS
0.625 U Taq DNA polymerase (Gibco BRL, Rockville,
Fungal isolates MD), 50 ng of template DNA in 1rPCR buffer (20 mM
of Tris HCl pH 8.4, 50 mM KCl) and 2.0 mM of MgCl2 in
The isolates studied consisted of 95 Beauveria bassiana
ultrafiltered water. Microtubes were placed in a Ther-
from parasitized insects found in different regions in
mocycler (MJ Research PTC 200) with the following
Colombia and around the world, as well as one isolate
program : 94 x for 5 min followed by 40 cycles with a
of B. brongniartii included as an outgroup (Table 1).
denaturation at 94 x for 1 min, annealing at 36 x for
For each isolate, five polypropilene vials containing
1 min and extension at 72 x for 2 min, and a final exten-
108 spores in 1.8 ml of 10 % glycerol were preserved at
sion at 72 x for 5 min. A negative control was included
x22 xC in the Mycological Collection of Cenicafé.
in every amplification reaction. All the reactions were
made at least twice in order to observe consistent band
Mycelium collection
patterns.
Mycelia and conidia from each isolate were plated on For ITS reactions, primers ITS 1 (5k-TCCGTAGG-
Sabouraud agar and inoculated into liquid GYM (glu- TGAACCTGCGG) and PN16 (5k-TCCCTTTCAA-
cose–yeast extract medium), incubated with orbital CAATTTCACG) that amplify the internal transcrip-
agitation (150 r.p.m.) at 25 x for 6 d. Mycelium was re- tion spacers (ITS1 and ITS2), the complete 5.8S rRNA
covered by vacuum filtration through a Whatman No. 1 gene and the 5k end of the 28S rRNA gene were evaluated
filter paper, washed twice with ultrafiltrated water, (White, Bruns & Taylor 1990). PCR reactions were set
lyophilized, and stored at x20 x until extraction. up in a 500 ml microcentrifuge tube with a total volume
of 100 ml containing 0.2 mM of each primer, 2.5 U of
DNA extraction Taq DNA polymerase (Gibco BRL), 100 ng of template
DNA, in 1rPCR buffer (20 mM of Tris HCl pH 8.4,
The CTAB extraction procedure (Zolan & Pukkila
50 mM KCl) and 1.5 mM of MgCl2 in ultrafiltrated
1996) was used with few modifications. About 50–
water. Amplification reactions consisted of an initial
100 mg of lyophilized mycelium was macerated in a
denaturation at 94 x for 5 min followed by 40 cycles with
prefrozen mortar, adding liquid nitrogen, until a pow-
denaturation at 94 x for 1.5 min, annealing at 55 x for
dered mycelium was obtained. The powder was then
1 min, extension at 72 x for 2 min, and a final extension
transferred into a polypropylene test tube containing
at 72 x for 5 min. A set of negative controls was included.
5 ml extraction buffer (700 mM NaCl, 50 mM Tris HCl
Amplification products were monitored by electro-
pH 8.0, 10 mM EDTA. 2 % CTAB, and 1 % mercapto-
phoresis in 1.5 % agarose gels, running 10 ml of ampli-
ethanol). Samples were incubated for 1 h at 60 x,
fication reaction using TBE Buffer 1r (89 mM tris
followed by two consecutive extractions with 5 ml
borate – 2 mM EDTA pH 8.0) at 4 V cmx1 during 2 h.
chloroform–isoamylalcohol (24 :1). The emulsions were
The gels were stained with ethidium bromide and visu-
centrifuged at 3500 r.p.m. for 15 min and the aqueous
alized under UV light.
phase recovered and taken to another tube. DNA was
precipitated by adding 0.54 v/v of cold isopropanol and
chilled at x20 x for at least 30 min. RFLP’s
DNA was collected by centrifugation at 10 000 r.p.m.
PCR products were precipitated with 0.2 M NaCl and
at 4 x for 15 min. The supernatant was discarded and
two volumes of ethanol, and resuspended in water.
the pellet dried at room temperature. DNA was dis-
Eight restriction enzymes were evaluated: AluI, EcoRI,
solved in 500 ml of TE buffer (10 mM Tris HCl pH 8.0,
MboI, HincII, SstI, MspI, ClaI and HaeIII (Promega,
1 mM EDTA pH 8.0) and treated with 5 ml of RNAse
Madison, WI) following the conditions recommended
A (10 mg mlx1) at 37 x during 1 h. After RNA diges-
by the supplier. Digestion products were analyzed in
tion, samples were extracted with 500 ml chloroform–
agarose gels at 2 % and in polyacrilamide gels at 12%,
isoamylalcohol (24 :1), centrifuged at 10 000 r.p.m. and
stained with ethidium bromide, and visualized with UV
DNA was precipitated from the supernatant at x20 x
light. Digestions were repeated at least twice to avoid
after addition of 2 v/v of absolute ethanol and 0.3 M
the possibility of incomplete digestions of the fragments
sodium acetate. DNA was finally collected by centri-
that could alter the final results.
fugation at 3500 r.p.m. and dissolved in 100 ml of TE
buffer.
Data analysis
Amplification
Only reproducible bands were taken into account to
For RAPD analysis, five random sequence primers develop a presence-absence binary data matrix. With
were used : C3 (5k-CGGCTTGGGT); OPA02 (5k-TG- this, Jaccard similarity coefficients were calculated
A. Gaitan and others 1309
Table 1. Genotype information for the 95 Beauveria bassiana (Bb) and one Beauveria brongniartii (Bbr) isolates compared.
Table 1. (cont.)
(a/(a+b+c)), and a dendrogram generated using hier- Bb9309, with a similarity index of 0.9655 ; The isolates
archical methods by the UPGMA clustering algorithm were from two different Colombian coffee regions, on
(Sneath & Sokal 1973). Additionally, an ordering coffee pests of the orders Coleoptera (H. hampei) and
analysis was made using a Principal Coordinates Lepidoptera (Perileucoptera coffeella). The lowest simi-
Analysis (Sneath & Sokal 1973). Similarity coefficient larity value was found for Bb9023 and Bb9504, with a
calculations, dendrograms and Principal Coordinates similarity index of 0.1944 ; isolates from the Philippines
Analysis were carried out with the NTSYSpc 2.02I and Guatemala, on insects of the order Hemiptera and
program (Exeter Software, Setauket, NY). Coleoptera (Leptocorisa sp. and H. hampei, respect-
ively).
The dendrogram generated with the similarity data
RESULTS (Fig. 2a) separated the 96 isolates into four groups.
Group one, the three isolates mentioned above (Bb9001,
RAPD’s
Bb9023 and Bb9024), from Colombia, Philippines and
The five primers produced 60 bands, the number gen- Canada, respectively. Group two, of ten isolates, nine
erated by each primer varying between 7 (for OPX 07) from Colombia and one from China (Bb9027), and
and 15 (for primer C3). As shown in Fig. 1, 25 bands mostly obtained from H. hampei. Group three, the
occurred as rare alleles, present in less than 10 % of the largest one, comprising 75 isolates. And the fourth
isolates tested, while 10 were fixed alleles, present in group, consisting of eight isolates from different coun-
more than 90 % of the isolates, leaving most variation in tries (Thailand, China, Colombia, Brazil and the Phi-
the remaining 25 bands. This initial bandmap shows lippines), and associated to various insect orders. This
relatively low variability in the isolates studied, even the last group had the lowest similarity index (0.4836), and
ones from around the world included. Also, three iso- the isolate of B. brongniartii (Bbr9301) was included in it.
lates (Bb9001, Bb9023 and Bb9024), were distinct from In general, no direct relationship was observed with
the rest, and finally, the B. brongniartii isolate was in- respect to host or geographical origin, although small
cluded amongst those of B. bassiana. groups comprised isolates from geographically close
Pairwise comparisons (data not shown) produced an areas. This was the case for Bb9003, Bb9004 and
average similarity value of 0.7063. Isolates exhibiting Bb9005, with an average similarity index of 0.9355,
exactly the same patterns with the five primers were not from the southern Colombian region of Nariño ; Bb9118
found. The highest values were between Bb9118 and and Bb9309, which came from Caldas and Quindı́o,
A. Gaitan and others 1311
Fig. 1. Bandmap based on RAPD markers (rows) for all the Beauveria bassiana isolates (columns). Marker presence is denoted
by a black square. The white triangle indicates B. brongniartii. Black triangles indicate genotypes Bb9001, Bb9023 and
Bb9024. Column on the right : white, rare alleles (less than 0.1 frequency) ; grey, allele frequency between 0.1 and 0.9 ; black,
very frequent alleles (higher than 0.9).
located in the Colombian central coffee zone, with a 9012, 9002, 9003, 9004, 9006, 9007, 9008, 9009, 9010,
similarity index of 0.9655, and obtained from H. hampei 9013, 9014, 9015, 9017, 9018, 9019, 9020, 9021, 9022,
and P. coffeella ; Bb9117, Bb9206 and Bb9215 from 9025, 9028, 9029, 9102, 9106, 9120, 9203, 9204, 9205,
Valle del Cauca, southwestern Colombia, with an aver- 9215, 9218, 9512, 9601) and a subgroup of the 59 ad-
age similarity of 0.8571 ; Bb9102, Bb9106 and Bb9107 ditional isolates. Again, none of the groups could be
proceeding from Antioquia, Caldas and Risaralda, all in related to either host or geographic location.
the main Colombian coffee zone, and from H. hampei,
P. coffeella and Bombix mori, with an average similarity
of 0.9524. Finally, Bb9007, Bb9315 and Bb9316 isolated DISCUSSION
from Antioquia, Caldas and Risaralda on insects of the
In order to determine the genetic variability of Beauveria
families Scarabeidae, Saturniidea and Blattidae, with an
bassiana in Colombia, a broad range of samples were
average similarity of 0.8751.
studied using markers unaffected by environmental
Principal Coordinates Analysis (Fig. 3) of the binary
factors and targeting the whole genome at random
matrix data clearly separated individuals belonging to
(RAPD’s), and also markers relevant to species-level
Group One, whereas a densely populated cloud con-
taxonomy (ITS). Using five random sequence RAPD
tained 80 isolates, and left out 14 that belonged indis-
primers on the 95 B. bassiana and one B. brongniartii
tinctively to the groups two (Bb9114), three (Bb9006,
isolates, no identical banding patterns were found.
Bb9026, Bb9112, Bb9206, Bb9213, Bb9510, and
However, a 0.7063 average similarity index indicates low
Bb9604) and four (Bb9016, Bb9022 and B. brongniartii)
genetic variation especially considering that isolates
of the dendrogram.
from different continents and hosts were included, and
that a molecular marker technique that covers the
ITS-RFLP’s
whole genome (RAPD’s) was used, which allowed to
Primers ITS1 and PN16 amplified a 930 bp fragment find differences amongst genetically close individuals.
for all the 95 isolates of Beauveria bassiana and the RAPD data, therefore, does not indicate that the B.
isolate of B. brongniartii. From the eight enzymes used, bassiana population in Colombia comprises clonal sub-
polymorphisms were observed with AluI and MpsI populations, due to the variability observed, and the
(Table 2), while MboI, HaeIII, HincII and ClaI pro- lack of association among the 25 (41.6%) highly poly-
duced monomorphic band patterns, and no restriction morphic bands obtained (Fig. 1).
fragments were obtained with EcoRI and SstI. The The 930 bp ITS fragment amplified in this experiment
dendrogram generated (Fig. 4) clustered the B. bassiana matches the reports by Neuvéglise et al. (1994), that
isolates into three well-differentiated groups, while the permitted the differentiation of Paecilomyces from
B. brongniartii sample was clearly separated from B. Beauveria, but not between Beauveria species. In that
bassiana. A second group was formed, once again, by study, ITS markers were useful in evaluating the
Bb9011, Bb9023 and Bb9024. In the third group, four variability of B. brongniartii isolates from different
different RFLP patterns were found : two were unique geographical origins and hosts. However, very few
for isolates Bb9011 and Bb9016. The other two were B. bassiana isolates were studied in that work or else-
associated with a subgroup of 32 isolates (Bb : 9005, where to date, and they display a conserved ITS
Genetic variability of Beauveria bassiana 1312
Fig. 2. Genetic similarity dendrogram based on 60 RAPD markers in Beauveria bassiana. Black squares indicate individuals
belonging to the first large subgroup obtained by ITS-RFLP. Individuals with unique ITS-RFLPs are labelled with an
asterisk. Origins : P, Philippines ; C, Canada; Ch, China ; E, Ecuador; G, Guatemala ; I, Italy ; T, Thailand ; U, USA.
br9301, B. brongniartii.
A. Gaitan and others 1313
Fig. 3. Principal Coordinates Analysis output for Beauveria bassiana. br9301, B. brongniartii.
Table 2. Band patterns (in bp) for polymorphic ITS-RFLP in No concordance was observed between the grouping
Beauveria bassiana. obtained with RAPD’s and that from ITS-RFLP
Enzyme Pattern 1 Pattern 2 Pattern 3 Pattern 4 Pattern 5 analysis (Fig. 2b). This indicates that a mechanism that
may result in diminished gene exchange and isolation of
AluI 470 600 670 genetic types, such as heterokaryon incompatibility, is
165 140 175
140 110 140
not at work. On the contrary, the presence of the two
110 60 110 main ITS types scattered among most of the RAPD’s
60 groups, together with the common absence of the teleo-
MspI 460 460 460 460 460 morph (Cordyceps staphylinidaecola), suggests that an
280 280 280 280 300 open gene transfer system could generate the observed
130 100 100 100 100 genetic diversity of the population. Under laboratory
100 80 80 60 90
conditions, both heterokaryon incompatibility and ana-
80 60 60 60
60 30 stomosis have been reported in B. bassiana (Paccola-
Meirelles & Azevedo 1991). However, further research
is required to establish the presence and significance of
sequence length. In fungi, ITS length polymorphisms parasexual recombination in nature for B. bassiana.
are not frequent within the same species; in most of the In addition to gene exchange, two other factors can
cases, variation in the ITS size does not exceed a few be related to genetic diversity in populations : host
nucleotides among species of the genus, even closely range and ecological conditions. Maurer et al. (1997)
related ones (Nazar et al. 1991). Our results, with a used RAPD markers and observed clusterings based
larger number of isolates, confirm these observations on the host insect, independently from the geographic
since the 95 isolates evaluated were monomorphic in origin. Similarly, Castrillo et al. (1999) observed a
length, and exhibited only six different variations in ITS common presence of a B. bassiana genotype associated
restriction patterns; four of these patterns were rep- with Alphitobius diaperinus, as well as genetic variability
resented by only one (Bb9001, Bb9011, Bb9016) or in the population, represented by the presence of 77
two (Bb9023 and Bb9024) isolates. Contrary to RAPDs, genotype-specific bands among 78 isolates evaluated.
ITS-RFLP data only indicates two very conserved and This indicates that a predominant factor that affects
widely dispersed genotypes of B. bassiana, which can- the population structure of B. bassiana is the host range,
not sufficiently differentiate the isolates in this study. In exerting a selection pressure favoring one or few geno-
addition, the recovery of conserved genotypes from types. In contrast, the population under study revealed
different continents indicates that the two ITS genotypes a clustering of isolates from H. hampei (40 isolates)
of B. bassiana may be distributed worldwide. together with ones from other coleopterans, and with
Genetic variability of Beauveria bassiana 1314
Fig. 4. Genetic similarity dendrogram based on ITS-RFLP markers for Beauveria bassiana. To facilitate reading, only the
first member of the large subgroups mentioned in the text is indicated.