400+ Tools and Innovations in Scholarly Communication

http://bit.
ly/innoscholcomm-list
authors:
contact:
url:
friendly url:
related to poster:
part of project:
background:
how to use:
publication date:
availability:
license:
current inclusion criteria:
current exclusion criteria:
variables:
ID =
NAME =
URL =
WEBLAUNCHYEAR =
PRIMEPHASEALPHA =
PRIMEPHASENUMBER =
FUNCTIONFREE =
UI_FUNCTIONFREE =
FUNCTIONCONTROLLED =
GEOCATEGORY =
UI_GEOCATEGORY =
UI_FIELDUSE_AH =
UI_FIELDUSE_SS =
UI_FIELDUSE_LF =
UI_FIELDUSE_PT =
TWITTERACCOUNT =
TWITTERFOLLOW =
ACTIVEPRE =
ACTIVEDIS =
ACTIVEANA =
ACTIVEWRI =
ACTIVEPUB =
ACTIVEOUT =
ACTIVEASS =
UI_REMARKS =
research phase number

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apart from our own explorations we

have used these invaluable tool lists and
resources; each has its seperate value
and we encourage you to visit them
#NAME?
400+ Tools and innovations in
scholarly communication
web-based tools a researcher can use

Bianca Kramer & Jeroen Bosman (and you?)
@MsPhelps & @JeroenBosman, both at Utrecht University Library
https://docs.google.com/spreadsheets/d/1KUMSeq_Pzp4KveZ7pb5rddcssk1XBTiLHniD0d3nDqo
http://bit.ly/innoscholcomm-list
http://dx.doi.org/10.6084/m9.figshare.1286826
https://101innovations.wordpress.com/
This is a shared database that grew out of the "101 innovations in scholarly communication" project. When we
published the 101 list of selected innovations our database already contained some 200 innovations/tools. The 101
selection was strictly on innovativeness and thus did not contain recent tools if they where not innovative compared to
older ones with the same functionality, even if the more recent ones were more popular or well-known. The database
shared here has dropped that strict innovativeness criterion and thus contains multiple tools offering basically the same
functionality. The masterfile that this database is derived from is still being worked on. Additional fields may become
can find tools
available herebyin workflow phase (see also below) and find some details on each of the tools. You are also warmly
a later stage.
invited to add tools or give suggestions/corrections/updates for field values. Please use the *green* user input columns
and leave the
20150301, data
last itself as
updated it is. When adding, you are welcome to leave your name, but it is not required. Please do not
20170209
20150301 through at least 20151231; from 20160101 until transfer to a more permanent open and free home
CC-BY 4.0
is end-user tool; is aimed at or working on scholarly information; is web-based; is multidisciplinary or targets broad
is software/app/browser extension that has to be installed; is a standard or programming language; is field specific tool
fields
that can not easily be applied in other fields or scaled to work for other fields; has active use limited to certain groups
ID,
e.g.NAME, URL, WEBLAUNCHYEAR,
institutional repositories PRIMEPHASEALPHA, PRIMEPHASENUMBER, FUNCTIONFREE,
FUNCTIONCONTROLLLED, GEOCATEGORY, FIELDUSE_AH, FIELDUSE_SS, FIELDUSE_LF, FIELDUSE_PT,
TWITTERACCOUNT, TWITTERFOLLOW_20150301, ACTIVEDIS, ACTIVEANA, ACTIVEWRI, ACTIVEPUB, ACTIVEOUT,
ACTIVEASS, UI_REMARKS
identification number
name of the tool
link to homepage of tool website
date/year of launch on web, when absent date/year of founding/creation
primary workflow phase name that the tool addresses (out of 30, see below )
primary workflow phase number that the tool addresses (out of 30, see below )
description of what the tool is or does
user input on: description of what the tool is or does
description of what the tool is or does (controlled)
effect of tool on scholarly communication: whether it makes that more (O)pen, E(fficient) or G(ood), where "Good"
means "reproducible"
user input on: effect ofor "fair"
tool on scholarly communication: whether it makes that more (O)pen, E(fficient) or G(ood),
where "Good" means "reproducible" or "fair"
used or can be used in Arts & Humanities (user input field)
used or can be used in Social Sciences (including law/economics) (user input field)
used or can be used in Life Sciences (user input field)
used or can be used in Physical Sciences & Technology (user input field)
link to Twitter profile
number of Twitter followers
usability in preparation phase of research workflow
usability in discovery phase of research workflow
usability in analysis phase of research workflow
usability in writing phase of research workflow
usability in publication pase of research workflow
usability in outreach phase of research workflow
usability in assessment phase of research workflow
remarks (user input field)
research phases (30)

project management
crowdsource/define research priorities/ideas/collaborations
fund / get contract
search (lit/data/patents/code)
get access
get alerts / get (reading) recommendations
reference management
read / view
annotate/tag (during/after reading)
experiment & collect/mine/extract data
share notebooks / protocols / workflows
analyze
visualize
write (+ code)
cite
translate
archive/share code
archive/share data / video
archive/share publications
archive/share posters
archive/share presentations
present research findings
peer review and comment/recommend (pre-pub)
select journal to submit to
publish
outreach/valorization
researcher profiling (& social network)
comment
peer review (post-pub)
measure impact (of output, e.g. article)
assessment (of researcher/research group)
creators + title
Crouzier: Connect Researcher - digital Tools for researchers
Dirt Directory: Dirt Directory Digital research Tools
Ebermann: Data Stack
Force11: Force11 Resource and Tool Catalog
LabWorm: tools
Martyn Rittman: Research preprints: server list
Research Stash
SciCrunch: resources
Tennant & Mounce: Open Glossary
Wikipedia: Comparison of research networking tools and research profiling systems
research phases (7)
preparation
discovery
analysis
writing
publication
publication
outreach
assessment
link
http://connectedresearchers.com/online-tools-for-researchers/
http://dirtdirectory.org/
https://blog.liip.ch/archive/2017/02/13/data-stack.html
https://www.force11.org/catalog
https://labworm.com/discover
https://docs.google.com/spreadsheets/d/17RgfuQcGJHKSsSJwZZn0oiXAnimZu2sZsWp8Z6ZaYYo/edit#gid=0
https://researchstash.com/
https://scicrunch.org/browse/resourcedashboard
https://docs.google.com/document/d/1-6ZokH_dyeMYB5vXJNgSnzu6EtWtKrvgpB8nNHfZynU
http://en.wikipedia.org/wiki/Comparison_of_research_networking_tools_and_research_profiling_systems
YYo/edit#gid=0
ing_systems
please do not sort columns Want to get rid of the "No fly zone" hash obscuring your view? Uncheck protected ranges in the Vie
NAME URL WEBLAUNCHYEAR PRIMEPHASEALPHA PRIMEPHASENUMBER

year of weblaunch /
name (blue ones were added primary phase of workflow phase
clickable link introduction /
last month) targeted order
founding
OSF (Open Science Framework)https://osf.io 2013 project management/planning 0
AsPredicted https://aspredicted.org 2015 project management/planning 0
DMP Tool https://dmptool.org/ 2011 project management/planning 0
Projects https://projects.ac/ 2013 project management/planning 0
Confluence (Atlassian) https://www.atlassian 2003 project management/planning 0
crowdsource/define research
Innocentive http://www.innocentiv 2001 1
priorities/ideas/collaborations
DHcommons http://dhcommons.org/ 2010 1
Syneratio https://syneratio.com 2012 1
LinkNovate http://www.linknovate 2014 1
Direct2experts http://direct2experts.o 2010 1
Scholar Universe http://www.scholaruni 2005 1
researcher profiling (& social
AcademicLabs http://www.academicla 2015 1
network)
Journal of Brief Ideas http://beta.briefideas.o 2015 1
Kolabtree https://www.kolabtree 2015 1
Thinklab http://thinklab.com/ 2015 fund / get contract 1
Kaggle https://www.kaggle.co 2010 fund / get contract 2
Walacea http://walacea.com/ 2014 fund / get contract 2
Petridish down 2011 fund / get contract 2
Endeavorist https://www.endeavori 2014 fund / get contract 2
Consano https://www.consano.o 2013 fund / get contract 2
SciFlies http://sciflies.org/ 2009 fund / get contract 2
Experiment.com https://experiment.co 2011 fund / get contract 2
Thinkable.org https://thinkable.org/ 2014 fund / get contract 2
My Projects http://myprojects.canc 2008 fund / get contract 2
http://scifundchallenge.org/
SciFund 2012 fund / get contract 2
? Uncheck protected ranges in the View menu! Please do not sort columns/rows!
Does the tool
FUNCTIONFREE UI_FUNCTIONFREE FUNCTIONCONTROLLLED G-E-O-CATEGORY UI_GEOCATEG make science
more Open,
user input for "what is/does Open / Efficient /
what is/does it? (free text) what is/does it? (controlled) Efficient or
it?" Good
Good /
version control system, collaboration
open project management G upload preprint.
Reproducible
software, project
standardized management
preregistration and+
form
preregistration platform G ?
platform
create data mangement plans project management E
science project management; manage
project management E
experiments and data
team collaboration/planning project management E only for inside j
crowdsourced innovation
connect researchers to research E/O
digital humanities platform matching
connect researchers to research O/E
projects to researchers crowdfunding platform, and
crowdfunding and collaboration E/O registered
Find experts, technology, innovative more
experts search engine E
startups
A federatedthrough non-pub
national (US) sources
network of
experts search engine E
research networks in biomedicine
find experts experts search engine E tried to registe
Facilitate research (group) collaboration &
matching network E
find matches
citable online index of research ideas
research ideas search engine O/E
available
platform to forhire
public scrutiny
freelance researchers for
connect researchers to research E
short-term
researchersprojects
and commenters can get
connect researchers to research O/E
paid
connect data scientists to (commercial)
contract competition E
market; open code competitions; jobs
crowdfunding crowdfunding platform E
curated platform of science projects for
crowdfunding platform E
crowdfunding
matching research and funds/grants crowdfunding platform E/G
non-profit curated crowdfunding for
medical
Organizes research projects
crowdfunding
platform for projects looking for
crowdfunding
promote open & fundamental research G/E
crowdfunding platform
through
showcase funding, prizesprojects,
of research and sponsorhsips
public can
choose
support which to donate
researchers to
in crowdfunding and
crowdfunding platform E/O
science outreach activities
ows!
TWITTERFOLLOW preparation
ACTIVEPRE/ ACTIVEDIS ACTIVEANA ACTIVEWRI ACTIVEPUB ACTIVEOUT
authoring /
Twitter followers define discovery, publication /
writing / outreach &
Twitter account cl on February 1, research data analysis archiving /
including visibility
2017 priorities / get collection sharing
annotations
https://twitter.co 7859 V
funding V V V V V
no account V
https://twitter.com 584 V
https://twitter.com/p 899 V
https://twitter.com/ 13.8K V
https://twitter.com/ 2394 V V V
https://twitter.com/l 12.4K V
no account V? V? V
no account V
https://twitter.com 386
no account V V
https://twitter.com/ 2508 V
https://twitter.com/t 154 V
https://twitter.com/S 190 V
no account V
https://twitter.com/ 1231 V V
ACTIVEASS
assessment /
metrics (incl.
comments,
discussion) https://osf.io
V
https://aspredicted.org/
https://dmptool.org/
https://projects.ac/
https://www.atlassian.com/software/confluence
http://www.innocentive.com/
http://dhcommons.org/
https://syneratio.com
http://www.linknovate.com/
http://direct2experts.org/
http://www.scholaruniverse.com/
http://www.academiclabs.co/
http://beta.briefideas.org/
https://www.kolabtree.com/
http://thinklab.com/
https://www.kaggle.com/
http://walacea.com/
http://www.petridish.org/
https://www.endeavorist.org
https://www.consano.org/
http://sciflies.org/
https://experiment.com/
https://thinkable.org/
http://myprojects.cancerresearchuk.org/
http://scifundchallenge.org/
Research Professional http://info.researchpr 2000 fund / get contract 2
Pivot http://pivot.cos.com/ 2012 fund / get contract 2
Foundation Directory https://fconline.founda 2013 fund / get contract 2
Newton's list http://newtonslist.crdf 2013 fund / get contract 2
Grants.gov http://www.grants.gov/ 2002 fund / get contract 2
Grant Forward https://www.grantforw 2012 fund / get contract 2
Fundref search http://search.crossref. 2013 fund / get contract 2
WorldCat http://www.worldcat.or 2006 search (lit/data/patents/code) 3
Standard Analytics http://www.standardana 2013 search (lit/data/patents/code) 3
Crossref Simple Text Query http://www.crossref.o 2006 search (lit/data/patents/code) 3
nanoHUB https://nanohub.org/ 2002 search (lit/data/patents/code) 3
PubMed https://www.ncbi.nlm. 1997 search (lit/data/patents/code) 3
Refindit http://www.refindit.org/ 2014 search (lit/data/patents/code) 3
Neuroscience Information Framehttps://www.neuinfo.or 2008 search (lit/data/patents/code) 3
PubPsych http://www.pubpsych.e 2013 search (lit/data/patents/code) 3
Scicurve http://scicurve.com/ 2013 search (lit/data/patents/code) 3
CiteSeer(X) http://citeseerx.ist.psu 1998 search (lit/data/patents/code) 3
Medline https://www.nlm.nih.g 1964 search (lit/data/patents/code) 3
RepEc (Research papers in Econhttp://repec.org/ 1997 search (lit/data/patents/code) 3
PubGet http://pubget.com/ 2008 search (lit/data/patents/code) 3
GoPubMed http://www.gopubmed 2004 search (lit/data/patents/code) 3
Quertle http://quertle.com/ 2009 search (lit/data/patents/code) 3
PhilPapers http://philpapers.org/ 2009 search (lit/data/patents/code) 3
Open Commons of Phenomenolohttp://ophen.org 2015 search (lit/data/patents/code) 3
Chemspider http://www.chemspide 2007 search (lit/data/patents/code) 3
COD http://www.crystallogr 2003 search (lit/data/patents/code) 3
DocGraph - Linea http://linea.docgraph.o 2015 search (lit/data/patents/code) 3
One Repo http://onerepo.net/ 2015 search (lit/data/patents/code) 3
CERN Open Data http://opendata.cern.c 2014 search (lit/data/patents/code) 3
DataBank http://data.worldbank. 2010 search (lit/data/patents/code) 3
finding funders funder search E registration imp
finding funders funder search E
overview of US grants funder search E
Search engine for research grants funder search E
Search research funding organisations funder search E
search books, articles and more; find collated library catalogue search
E
holding libraries
articles/databases) machine readable and engine
enhancing bibliographic records E
API-accessible, adding
Batch retrieving DOI's based linkedon
data and
free style
centralized platform for computational extracting metadata E
bibliography
nanotechnology research, education, and field specific search engine E
collaboration
discovery tool for biomedical sciences field specific search engine E
metasearch engine for life sciences field specific search engine E
neuroscience information, tools, data or
field specific search engine E
materials,
search stands, ontology
psychological literature, mainly
European
Visual exploration of PubMed literature
records
bibliographical database, citation field specific search engine,
E
enhanced citation enhanced
field specific search engine,
index of medical literature E
online bibliographic database for citation enhanced
E
economics citation enhanced
Search engine for life-science PDFs E
citation enhanced
semantic search using MEDLINE corpus E
citation enhanced
semantic search using MEDLINE corpus E
comprehensive citation enhanced search, citation enhanced
phenomenological literature. Planned: full- E
archive & community for philosophy collaborative
text search, citation indexing, timeline and O
search collaborative
networkchemical structures
visualisations, byannotations,
online name and field specific search engine, for
E
Open-access
structure collection of crystal chemical structures
field specific search engine, for
structures
communityofopen organic,
data inorganic,
platform tometal- E/O
crystal structures
field specific search engine, for O/E
organic
discover, compounds and
and minerals
eventuallyaggregate
all the world’s enrich new open
repositories,in data
healthcare datasets field specific search engine, for
uniform format, freely accessible to all as O
data
a set(and
find of web
use)services
CERN data and as harvestable O
free economic/social data from World data specific search engine, for
field
O
Bank data
no account V
https://twitter.com/ 130K V
https://twitter.com/c 2095 V
no account V
https://twitter.com/worldcatorg [account changed] V
no account V V? V?
no account V
https://twitter.co 1948 V V
https://twitter.com 22.3K V
https://twitter.com/f 1 V
https://twitter.com/s 4891 V
no account V
no account V
no account V
no account V V V
no account V
https://twitter.com 731 V V
no account V
no account V V
http://info.researchprofessional.com/
http://pivot.cos.com/
https://fconline.foundationcenter.org/
http://newtonslist.crdfglobal.org/
http://www.grants.gov/
https://www.grantforward.com
http://search.crossref.org/fundref
http://www.worldcat.org/
http://www.standardanalytics.io/
http://www.crossref.org/SimpleTextQuery/
https://nanohub.org/
https://www.ncbi.nlm.nih.gov/pubmed/
http://www.refindit.org/
https://www.neuinfo.org/
http://www.pubpsych.eu/
http://scicurve.com/
http://citeseerx.ist.psu.edu/
https://www.nlm.nih.gov/pubs/factsheets/medline.html
http://repec.org/
http://pubget.com/
http://www.gopubmed.com/web/gopubmed/
http://quertle.com/
(V) http://philpapers.org/
http://ophen.org
http://www.chemspider.com/
http://www.crystallography.net/
http://linea.docgraph.org/
http://onerepo.net/
http://opendata.cern.ch/
http://data.worldbank.org/
heets/medline.html
EurekaMag http://eurekamag.com/ 1998 search (lit/data/patents/code) 3
SciBite http://scibite.com 2012 search (lit/data/patents/code) 3
GenBank http://www.ncbi.nlm.n 1982 search (lit/data/patents/code) 3
OpenPHACTS http://www.openphacts 2011 search (lit/data/patents/code) 3
Expernova https://en.expernova. 2014 search (lit/data/patents/code) 3
PaleoBioDB https://paleobiodb.org 2000 search (lit/data/patents/code) 3
Yale Image Finder http://krauthammerlab 2008 search (lit/data/patents/code) 3
MEDIE http://www.nactem.ac. 2005 search (lit/data/patents/code) 3
JournalMap https://journalmap.org 2010 search (lit/data/patents/code) 3
OALib (search) http://www.oalib.com 2013 search (lit/data/patents/code) 3
Scilit http://www.scilit.net 2013 search (lit/data/patents/code) 3
Paperity http://paperity.org/ 2014 search (lit/data/patents/code) 3
Libraccess http://libraccess.org/ 2015 search (lit/data/patents/code) 3
Science Open articles/authors https://www.scienceo 2014 search (lit/data/patents/code) 3
ResearchPad http://researchpad.co/ 2014 search (lit/data/patents/code) 3
DBpedia http://wiki.dbpedia.org 2007 search (lit/data/patents/code) 3
CitEc (Citations in Economics) http://citec.repec.org/ 2004 search (lit/data/patents/code) 3
JISC Open Citations http://opencitations.ne 2011 search (lit/data/patents/code) 3
Metalib http://www.exlibrisgr 2002 search (lit/data/patents/code) 3
JSTOR http://www.jstor.org/ 1995 search (lit/data/patents/code) 3
Research-o-Matic http://www.researchom 2011 search (lit/data/patents/code) 3
Recherche Isidore http://www.rechercheis 2010 search (lit/data/patents/code) 3
Worldwidescience http://worldwidescienc 2007 search (lit/data/patents/code) 3
Hathi https://www.hathitrust. 2008 search (lit/data/patents/code) 3
Baidu Scholar http://xueshu.baidu.c 2014 search (lit/data/patents/code) 3
Europeana http://www.europeana 2008 search (lit/data/patents/code) 3
Open Grey http://www.opengrey.e 2011 search (lit/data/patents/code) 3
Iris.ai https://iris.ai/ 2016 search (lit/data/patents/code) 3
Science Citation Index (Web of Shttp://wokinfo.com/ 1964 search (lit/data/patents/code) 3
Microsoft Academic Search (MAShttp://academic.resea 2009 search (lit/data/patents/code) 3
literature pre-2000, including reports, field specific search engine, for
using text-mining E/O
reviews, meeting; to track latest
uploading news in
full-text natural science
pharma/biotech
annotated collection of all publiclyfree
(in-company and E
news
search
availableinterface)
DNA sequences, provided by E
open access innovation platform for drug searching DNA
field specific sequences
search engine,
NCBI O
discovery via a semantic web approach field specific
searching search engine,
economic data
search engine for innovation searching experts and
field specific search engine, E
organisms of all geological ages, as well companies
search OA images andeasy
figures in to data searching taxonomic data of E/O
data services to allow access field specific search engine,
PubMedCentral by searching text within organisms E/O
retrieving searching text in images
images biomedical correlations from field specific search engine,
E
medline
Search (environmental) literature based semantic
field specific search engine, with
E
on geolocation
aggregate and index scholarly OA geolocations
full text OA aggregation,
O/E
publications multidisciplinary
FT OA aggragation E
multidisciplinary
multidisciplinary OA aggragation O
interdisciplinary, full text aggregating open multidisciplinary
O
access resourcesmulti-field,
OA aggragation, across repositories,
with post to multidisciplinary
O
publication peer review multidisciplinary
OA search engine/ePub reader O/E
crowdsourced extraction of structured multidisciplinary
machine readable references E
information from Wikipedia
extracting references and citation from
machine readable references E
economics publications
making references available machine readable references E
federated
database of search
journal articles, books and metasearch engine E
primary sources; some public domain multidisciplinary search engine E
(essays,
material, book
back notes,
files AP notes, term multidisciplinary search engine E
papers,
Integrated searchpapers,
research theses,
of archives &
multidisciplinary search engine E
repositories for SSH search (French)
Metasearch of scholarly databases multidisciplinary search engine E
preserve and disseminate collections of
partner institutions in digital form
scholarly search engine (Chinese) multidisciplinary search engine E
search documents and artefacts from the
European
search grey heritage
literature institutions
(in Europe), data
automatically multidisciplinary
multidisciplinary search
search engine O/E
from 1950s onwards information from
extract engine
scientific papers, explore related research for finding conceptually related E Language resea
from 30 index
M OA papers multidisciplinary search engine,
information
citation E
citation enhanced
multidisciplinary search engine,
citation index E
citation enhanced
https://twitter.com/S 398 V
no account V
no account V
no account V
https://twitter.com/O 68 V V
no account V
https://twitter.com/P 1299 V
no account V
no account V
https://twitter.com/h 9592 V
no account V
https://twitter.com/T 726 V
https://twitter.co 1447 V V
http://eurekamag.com/
http://scibite.com
http://www.ncbi.nlm.nih.gov/genbank/
http://www.openphacts.org/
https://en.expernova.com
https://paleobiodb.org
http://krauthammerlab.med.yale.edu/imagefinder
http://www.nactem.ac.uk/medie/search.cgi
https://journalmap.org/
http://www.oalib.com
http://www.scilit.net
http://paperity.org/
http://libraccess.org/
https://www.scienceopen.com/
http://researchpad.co/
http://wiki.dbpedia.org/
http://citec.repec.org/
V http://opencitations.net/
http://www.exlibrisgroup.com/category/MetaLibOverview
http://www.jstor.org/
http://www.researchomatic.com/
http://www.rechercheisidore.fr/
http://worldwidescience.org/
https://www.hathitrust.org/
http://xueshu.baidu.com/
http://www.europeana.eu
http://www.opengrey.eu/
https://iris.ai/
V http://wokinfo.com/
V http://academic.research.microsoft.com/
/imagefinder
ory/MetaLibOverview
experiment &
Science Open Citation Index https://www.scienceo 2015 3
collect/mine/extract data
Scopus http://www.scopus.co 2004 search (lit/data/patents/code) 3
Google Scholar http://scholar.google. 2004 search (lit/data/patents/code) 3
Semantic Scholar https://www.semantics 2015 search (lit/data/patents/code) 3
BookGenie451 http://www.bookgenie 2014 search (lit/data/patents/code) 3
Research Data Switchboard http://rd-switchboard.n 2015 search (lit/data/patents/code) 3
SHARE Notify https://osf.io/share 2015 search (lit/data/patents/code) 3
Delpher http://www.delpher.nl/ 2013 search (lit/data/patents/code) 3
Open Knowledge Maps http://openknowledge 2016 search (lit/data/patents/code) 3
PLOS Cloud Explorer http://groups.ischool. 2014 search (lit/data/patents/code) 3
OpenEdition http://www.openeditio 2011 search (lit/data/patents/code) 3
RockYourPaper http://www.rockyourpa 2013 search (lit/data/patents/code) 3
OpenAIRE https://www.openaire. 2010 search (lit/data/patents/code) 3
OAIster http://oaister.worldcat. 2002 search (lit/data/patents/code) 3
BASE (Bielefeld Academic Searchttp://www.base-searc 2004 search (lit/data/patents/code) 3
CORE https://core.ac.uk/ 2011 search (lit/data/patents/code) 3
Digital Commons Network http://network.bepres 2004 search (lit/data/patents/code) 3
WonderLib https://askwonder.com 2015 search (lit/data/patents/code) 3
Stack Exchange http://stackexchange. 2008 search (lit/data/patents/code) 3
Biostars https://www.biostars.o 2012 search (lit/data/patents/code) 3
Wolfram Alpha http://www.wolframalp 2009 search (lit/data/patents/code) 3
ContentMine http://contentmine.org 2014 search (lit/data/patents/code) 3
Orgref http://www.orgref.org 2014 search (lit/data/patents/code) 3
GRID https://www.grid.ac/ 2015 search (lit/data/patents/code) 3
ACI Scholarly Blog Index http://scholar.aci.info/ 2014 search (lit/data/patents/code) 3
mloss http://mloss.org/ 2007 search (lit/data/patents/code) 3
CrossRef Metadata Search http://search.crossref. 2013 search (lit/data/patents/code) 3
Prepubmed http://www.prepubmed 2016 search (lit/data/patents/code) 3
FAIRsharing (prev. Biosharing) https://fairsharing.org/ 2009 search (lit/data/patents/code) 3
ScienceStage http://sciencestage.co 2008 search (lit/data/patents/code) 3
citation index underlying Science Open multidisciplinary search engine,
E
database citation enhanced
citation indexing E
citation enhanced
index of scholarly publications E/O
semantic search engine for (OA?) citation enhanced
E
computer science papers citation enhanced
discovering
Find connectionsbooksbetween
& more research E
for books
datasets across ANDS, Dryad, CERN and multidisciplinary search engine, E
for data
other
searchinternational
events across repositories
the research cycle for events in research
multidisciplinary searchwhole
engine, E
search engine for full text search of Dutch cycle
discovery searching digitized historical E
literary andtool for openheritage
journalism science through
mapping/visualization (built on PLoS documents E/O
Visualization of PLOS articles by subject visual
Library) E
areas
Platform that combines calendar, blogging with visualization
(OA) Discovery and reference OA journal platform O
and OA journals/books for (French) SSH
management platform
knowledge infrastructure focus on South OA
aggregating open access search engine O/E
Asia, Africa and Latin America
and funded (FP7, H2020, national) open access search engine O
scholarly search engine indexing
content open access search engine O
repositories
scholarly search engine indexing
open access search engine E/O
repository content
search across OA repositories open access search engine E/O
search engine for content of repositories
research enginesoftware
fuelled by experts: email open access search engine E
using BEpress
questions, expert researcher will send Q&A platform E
Scholarly and non scholarly Q&A, by
back key reseources Q&A platform E
subject
Q&A platform for bioinformatics, by
Q&A platform, field-specific E
subject
computational knowledge engine reference E
mine facts from scientific literature reference (as linked data) E
research organization directory/dataset
research organization directory E/O
with IDs (in
research CSV)
organization directory/dataset
research
scholarly organization directory
blog posts search E
with IDs (in JSON/CSV)
search engine for scholarly blogposts,
Machine learning open source software - engine E
with LCSH search engine, field specific, for
crowdsourced collection w/ focus on O/E
software
interoperability
search
search DOI metadata
life science "preprints": indexes search engine, for metadata E
arXiv q-bio, PeerJ Preprints, Figshare, search engine, for preprints E/O
Portal
bioRxiv,forand
standards, databases and
F1000Research search engine, for standards
E
policies infor
Platform the life sciences
science videos/podcasts, and databases
search engine, for video E/O
networking and outreach
no account V
no account V
no account V
no account V
no account V
no account V
https://twitter.com/OpenAIRE_eu
6151 V
no account V
no account V
no account V
https://twitter.com 17K V
https://twitter.com 48.9K V V
https://twitter.com 1462 V V?
https://twitter.com/ 542 V? V?
no account V
no account V
no account V
https://www.scienceopen.com/
(V) http://www.scopus.com
http://scholar.google.com/
https://www.semanticscholar.org/
http://www.bookgenie451.com
http://rd-switchboard.net/
https://osf.io/share
http://www.delpher.nl/
http://openknowledgemaps.org/
http://groups.ischool.berkeley.edu/ploscloudexplorer/
http://www.openedition.org/?lang=en
http://www.rockyourpaper.org/
https://www.openaire.eu
http://oaister.worldcat.org/
http://www.base-search.net/
https://core.ac.uk/
http://network.bepress.com/
https://askwonder.com/
http://stackexchange.com/sites#
https://www.biostars.org/
http://www.wolframalpha.com/
http://contentmine.org/
V? http://www.orgref.org/web/download.htm
V? https://www.grid.ac/
http://scholar.aci.info/
http://mloss.org/
http://search.crossref.org/
http://www.prepubmed.org/
https://biosharing.org/
http://sciencestage.com/
oscloudexplorer/
Zanran http://www.zanran.co 2011 search (lit/data/patents/code) 3
Memento Timetravel service http://timetravel.mem 2015 search (lit/data/patents/code) 3
Aquabrowser http://www.proquest.c 2002 search (lit/data/patents/code) 3
EvidenceFinder http://labs.europepmc. 2014 search (lit/data/patents/code) 3
Arrowsmith http://arrowsmith.psyc 2001 search (lit/data/patents/code) 3
Wikidata http://www.wikidata.or 2012 search (lit/data/patents/code) 3
Primo http://www.exlibrisgr 2008 search (lit/data/patents/code) 3
Summon http://www.proquest. 2009 search (lit/data/patents/code) 3
Worldcat Local http://www.oclc.org/wo 2007 search (lit/data/patents/code) 3
Worldcat Discovery https://www.worldcat.o 2006 search (lit/data/patents/code) 3
EDS (Ebsco Discovery Service) https://www.ebscohost 2010 search (lit/data/patents/code) 3
OSF preprint search https://osf.io/preprints 2016 search (lit/data/patents/code) 3
La Referencia http://www.lareferencia 2013 search (lit/data/patents/code) 3
RES https://bbcarchdev.gith 2014 search (lit/data/patents/code) 3
Open Citation Corpus http://opencitations.ne 2010 search (lit/data/patents/code) 3
Meta (was Sciencescape) https://meta.science 2015 search (lit/data/patents/code) 3
JURN http://www.jurn.org/ 2009 search (lit/data/patents/code) 3
Paperscape http://paperscape.org/ 2013 search (lit/data/patents/code) 3
HowOpenIsIt? Open article gaug http://oag.cottagelabs 2013 get access 4
Scoap3 scoap3.org 2014 get access 4
Unglue it https://unglue.it/ 2011 get access 4
Open Access Button https://www.openacces 2013 get access 4
Deepdyve https://www.deepdyve 2008 get access 4
Hinari http://extranet.who.int 2002 get access 4
Research4life (in 4 UN progra http://www.research4li 2010 get access 4
oadoi.org https://oadoi.org 2016 get access 4
DOAI http://doai.io/ 2016 get access 4
SciFeeds https://scifeeds.com/ 2015 get alerts/recommendations 5
PubNiche http://www.pubniche. 2015 get alerts/recommendations 5
Sparrho http://www.sparrho.co 2013 get alerts/recommendations 5
search tables in texts on the web search engine, for web tables E
metasearch for previous versions of
search engine, historical E
webpages suing 10+ webpage archives
discovery layer over
enriches literature library catalogue
exploration in Europe search interface enhancement E
PMC by suggesting questions (based on search interface enhancement E
identifying meaningful
full-text results) alongside linkssearch
between two
results search interface enhancement E
sets of PubMed literature
Storage of structured data for wikimedia
search/use data E
products web scale discovery search
web scale discovery service E
engine
web scale discovery search
web scale discovery service E
webscale configurable discovery service engine
E
for libraries engine
webscale discovery of library holdings E
engine
webscale discovery search engine E
engine
aggregated preprint search engine search engine, for preprints O/E
federated network of institutional multidisciplinary search engine,
open discovery platform for digital O/E
repositories in Latin America. for repository content
collections of (UK) libraries, museums, E/O
for digital collections
broadcasters
repository for and
opengalleries
scholarly citation data citation data corpus O
scientific knowledge network powered by
search open access journal articles, multidisciplinary search engine E
AI
books and theses (Google custom search open access search engine O/E
over curated index)
Visualisation built on ArXiV field specific search engine E
determine license for journal articles determine license E
collaboratively flipping journals to OA get access by promoting OA O
crowdfunding to make specific books
get access by promoting OA O
freely
Access; available with CC-license
offers alternative ways to get
get access by promoting OA O
paywalled paper (repositories,
Pay-per-view access to scholarly contact
publication vendor E
publications reduced publication price /
reduced price access program O
waivers
reduced publication price /
reduced priced access program O
detect open access vesions of articles waivers
O
based on doipointing to Open Access
doi resolver
O
versions (including
citation analysis, on ResearchGate)
social media, news aggregator showing recent and
E
media, user interactions, and natural popular
aggregator science information
showing recent
science news curation E
articleforabstracts
alert resources based on
TOC/content alerting in feed format E
TOCs or search terms
no account V
no account V
no account V
https://twitter.com/w 8200 V
no account V
no account V
no account V
no account V
no account V
no account V
no account V
no account V
no account V
no account V V
https://twitter.com/u 1158 V V
https://twitter.com/d 40 V
https://twitter.com/s 11.8K V
http://www.zanran.com
http://timetravel.mementoweb.org/
http://www.proquest.com/products-services/AquaBrowser.html
http://labs.europepmc.org/evf
http://arrowsmith.psych.uic.edu/cgi-bin/arrowsmith_uic/start.cgi
http://www.wikidata.org
http://www.exlibrisgroup.com/category/PrimoOverview
http://www.proquest.com/products-services/The-Summon-Service.html
http://www.oclc.org/worldcat-local.en.html
https://www.worldcat.org/
https://www.ebscohost.com/discovery
https://osf.io/preprints/discover
http://www.lareferencia.info/
https://bbcarchdev.github.io/res/
V http://opencitations.net/
https://meta.science
http://www.jurn.org/
http://paperscape.org/
http://oag.cottagelabs.com/
scoap3.org
https://unglue.it/
https://www.openaccessbutton.org/
https://www.deepdyve.com/
http://extranet.who.int/hinari/en/journals.php
http://www.research4life.org
https://oadoi.org
http://doai.io/
https://scifeeds.com/
http://www.pubniche.com
http://www.sparrho.com/
services/AquaBrowser.html
bin/arrowsmith_uic/start.cgi
ory/PrimoOverview
services/The-Summon-Service.html
Scizzle http://www.myscizzle. 2013 get alerts/recommendations 5
Nowomics https://nowomics.com/ 2013 get alerts/recommendations 5
Flypapers https://twitter.com/fly 2013 get alerts/recommendations 5
PubChase https://www.pubchase 2013 get alerts/recommendations 5
JournalTocs (previously TicTocs) http://www.journaltocs 2008 get alerts/recommendations 5
Browzine https://browzine.com/ 2011 get alerts/recommendations 5
TiNYARM ('This is not yet anothehttp://atinyarm.appsp 2012 get alerts/recommendations 5
F1000 (Biology) http://f1000.com/prim 2002 get alerts/recommendations 5
F1000 Prime http://f1000.com/prim 2010 get alerts/recommendations 5
CitePeer http://citepeer.io 2016 get alerts/recommendations 5
CERMINE http://cermine.ceon.pl 2013 reference management 6
QUOSA https://www.elsevier.co 1996 reference management 6
RefBank http://refbank.refindi 2012 reference management 6
ACS ChemWorx https://hp.acschemwor 2014 reference management 6
RefME https://www.refme.com 2014 reference management 6
Stackly (disc. from 20150901) https://www.stackly.or 2014 reference management 6
Bibliogo http://info.bibliogo.com 2011 reference management 6
Google Scholar Library http://scholar.google. 2013 reference management 6
PaperPile https://paperpile.com/ 2012 reference management 6
CiteUlike http://www.citeulike.or 2006 reference management 6
BibSonomy http://www.bibsonomy. 2005 reference management 6
PaperBox http://www.paper-box. 2012 reference management 6
Qiqqa http://www.qiqqa.com/ 2010 reference management 6
Wizfolio http://wizfolio.com/ 2007 reference management 6
Reference Manager http://refman.com/ 1984 reference management 6
EndNote http://endnote.com/ 1988 reference management 6
RefWorks http://www.refworks.c 2001 reference management 6
Citavi https://www.citavi.com 2003 reference management 6
Zotero https://www.zotero.org 2006 reference management 6
PapersApp (Mekentosj -) http://www.papersapp 2007 reference management 6
alert for resources based on
alerting tool built on PubMed TOCs
alert fororresources
search terms, field
based on E
news feed for biological data and specific
Twitterbot of Drosophila papers in TOCs or search terms, field
alert for resources based on E
publications
PubMed, ArXiV, BioRxiv, PeerJ and specific
TOCs orresources
search terms, field E
alert for based on
alerting
F1000 & recommendations; personal specific
TOCs or search terms, field E
library sharing alert for resources based on
TOC-alerting specific, also collaborative E
TOCs or search terms,
alert for resources based multifield
on
TOC/content
share alerting
and suggest and PDF-reader
reading activities with E
TOCs or search terms, multifield
peers, so that these can act as an give and get recommendations E
information filter
recommendations recommendation by experts E
recommendations recommendation
alert for resourcesbybased
experts
on E
based on semantic mapping against
TOCs or search terms, field E
existing references of a paper. PubMed extract metadata from
extract metadata from scholarly PDF's specific E
enterprise reference management & full publications
collaborative bibliography of biodiversity full text management for groups E
text management
literature; nodes for different reference management O/E
collaborative
organizations,reference
publishersmanager coupled
(like Pensoft)
online reference manager; search by reference management E
with tools and services for authors
book/journal article title, DOI, ISBN, ISSN reference management E
reference
or copy/pastemanagement
URL, scantool,
bookwith
barshared
code reference management E/O
'stacks'to track
reference management; alerts and PDF
reference management E
workflow
simple reference management, restricted
to GS records
web-based reference management tool reference management E
reference management &
reference management & sharing E/O
sharing
reference management &
Share bookmarks
cloud-based and lists
reference + pdfofmanagement
literature. E
sharing
reference management, with
system E
cite/bibliography
reference management,options with
free reference manager E
online reference management tool, also cite/bibliography
E
for mp3, video, weblinks etc. cite/bibliography
cite/bibliography
cite/bibliography
cite/bibliography
cite/bibliography
reference management E/O
cite/bibliography
reference options with
management,
cite/bibliography options
https://twitter.com/j 1435 V
https://twitter.com/ 110
no account V
no account V
no account V
no account V
no account V V
https://twitter.com/bibliogodev V V
no account V V?
https://twitter.com/p 2394 V V
https://twitter.com/c 1297 V V
no account V V
https://twitter.com/w 52 V V
no account V V
https://twitter.com/ci 1768 V V
https://twitter.com/z 13.9K V V
http://www.myscizzle.com/
https://nowomics.com/
https://twitter.com/fly_papers
https://www.pubchase.com/
http://www.journaltocs.hw.ac.uk/
https://browzine.com/
http://atinyarm.appspot.com
V http://f1000.com/prime
V http://f1000.com/prime
http://citepeer.io
http://cermine.ceon.pl/index.html
https://www.elsevier.com/solutions/quosa-scientific-literature
http://refbank.refindit.org/RefBank/search
https://hp.acschemworx.acs.org/
https://www.refme.com/
https://www.stackly.org
http://info.bibliogo.com/
http://scholar.google.com/scholar?scilib=1
https://paperpile.com/
http://www.citeulike.org/
http://www.bibsonomy.org/
http://www.paper-box.co/
http://www.qiqqa.com/
http://wizfolio.com/
http://refman.com/
http://endnote.com/
http://www.refworks.com/
https://www.citavi.com/
https://www.zotero.org/
http://www.papersapp.com/
quosa-scientific-literature
Mendeley https://www.mendeley 2008 reference management 6
Colwiz https://www.colwiz.co 2012 reference management 6
Proquest Flow https://flow.proquest. 2013 reference management 6
Cite This For Me https://www.citethisfo 2012 reference management 6
F1000 Workspace (formerly beta)http://f1000.com/work/ 2014 reference management 6
Docear http://www.docear.org/ 2011 reference management 6
Qiqqa (from crowdsourced list) http://www.qiqqa.com/ 2010 reference management 6
JCB dataviewer http://jcb-dataviewer.r 2007 read/view 7
Utopiadocs http://utopiadocs.com/ 2012 read/view 7
Readcube https://www.readcube 2011 read/view 7
PubReader http://www.ncbi.nlm.n 2012 read/view 7
Ferret http://ferret.ai/ 2015 read/view 7
Wiley Smart Article http://onlinelibrary. 2012 read/view 7
Wiley Anywhere Article http://olabout.wiley. 2014 read/view 7
Incontext https://code.google.co 2011 read/view 7
CrossMark http://www.crossref.or 2013 read/view 7
annotate/tag (during/after
Annotag Calculator 2014 8
reading)
Hypothes.is https://hypothes.is 2011 annotate/tag (during/after read 8
Annotate.co https://www.annotate. 2014 8
reading)
Annotated Books Online http://www.annotated 2012 8
reading)
Cochrane EMBASE screening prohttp://screening.met 2014 8
reading)
PeerLibrary https://peerlibrary.org 2013 annotate/tag (during/after read 8
HistoryPin https://www.historypin 2010 8
reading)
Mark2Cure https://mark2cure.org/ 2014 8
reading)
ResQuotes http://www.resquotes 2013 8
reading)
Annotation Studio http://www.annotations 2013 8
reading)
TagTeam http://tagteam.harvard 2012 8
reading)
experiment &
TBE Validator service http://www.teibyexamp 2013 9
collect/mine/extract
experiment & data
Dedoose http://www.dedoose.c 2010 9
experiment & data
ManyLabs https://www.manylabs. 2013 9
reference management, with
reference management E/O
cite/bibliography options with
reference management,
reference
Referencemanagement
management tool, shared E
bibliographies
reference management, making/sharing E
annotations in papers,
reference manager, commenting
writing platform,on
w/ E
references
mindmapping feature, literature E
reference management, with suggestions, cite/bibliography options with
suggestions based on mindmaps E
related documents, etc.
viewing multidimensional images from cite/bibliography options
PDF reader esp. for scholarly docs image viewer E
JCB journal
suggesting related literature based on PDF reader with extra options E
recommendations,
what you read PDF-reader, annotator,
alternative web presentation to read PDF reader with extra options E
reference management
literature in PMC and Bookshelf (code in reading enhancement E
summarizing/enriching articles and
GitHub) reading enhancement E
providing
Enhancedfull-text search
article tools forbased on
chemistry
reading enhancement E
content
Enhanced in Wiley
HTMLjournals
article from Wiley
publisher.
navigate through RDF relations in a
smooth
show and understandable
information on the versionwayand
reading enhancement E/G
updates of a publication
annotation hashtag ('annotag') based on
annotation protocol E
ISBN, page(s)
annotating, commenting and tagging tool annotation tool O
Annotate and collaborate on documents
annotation, also collaborative E
and imagesplatform for early modern
annotation E/O
classify annotation, also collaborative
books research abstracts of RCTs in
Embase for inclusion in Cochrane annotation, also collaborative E/G
CENTRAL
collaborative annotating; discovery annotation, also collaborative O
crowdscourced community platform
annotation, also collaborative E/O
collaborating
crowdsourcedaround history
annotation of biochemical
annotation, also collaborative E/G
papers
saving and organizing Kindle quotes and
suite of collaborative web-based annotation, also collaborative E
web text snippets
annotation tools (currently under annotation, also collaborative E
open-source
development tagging
at MIT) platform and open vocabulary for the project topic. annotation, also collaborative,
E/O
feed aggregator
web-based validator for XML-encoded Each tag publishes a feed for using tags E
code/text validator
text
qualitative and mixed methods research
collect & visualize data E
with text,
tools and photos, audio, videos,
documentation for citizen crowdsourced/collaborative
O/E
science analysis
https://twitter.com 9902 V V V
https://twitter.com/c 705 V V
no account V V
https://twitter.com/ 297 V V (V)
no account V
https://twitter.com/ 2916 V (V)
no account V
https://twitter.com/g 236 V
no account V
no account V
no account V
https://twitter.com/ 5086 V?
no account V
https://twitter.com/H 12.1K V
no account V
https://twitter.com/ 2204 V V V
no account V
V https://www.mendeley.com/
https://www.colwiz.com/
https://flow.proquest.com/
https://www.citethisforme.com/
http://f1000.com/work/
http://www.docear.org/
http://www.qiqqa.com/
http://jcb-dataviewer.rupress.org/
http://utopiadocs.com/
https://www.readcube.com/
http://www.ncbi.nlm.nih.gov/pmc/about/pubreader/
http://ferret.ai/
http://onlinelibrary.wiley.com/subject/code/000128/homepage/new.htm
http://olabout.wiley.com/WileyCDA/Section/id-819787.html
https://code.google.com/archive/p/surf-incontext/
http://www.crossref.org/crossmark/
V https://hypothes.is
https://www.annotate.co/about.html
http://www.annotatedbooksonline.com/
http://screening.metaxis.com/EMBASE/login.php
https://peerlibrary.org
https://www.historypin.org/
https://mark2cure.org/
http://www.resquotes.com
http://www.annotationstudio.org/
http://tagteam.harvard.edu/
http://www.teibyexample.org/xquery/TBEvalidator.xq
http://www.dedoose.com/
https://www.manylabs.org/
bout/pubreader/
t/code/000128/homepage/new.htm
Section/id-819787.html
urf-incontext/
y/TBEvalidator.xq
experiment &
Morph.io https://morph.io/ 2014 9
experiment & data
Google NGram Viewer https://books.google 2010 9
experiment & data
Bellingcat https://bellingcat.che 2014 9
experiment & data
Tabula http://tabula.technolog 2013 9
experiment & data
WebPlotDigitizer http://arohatgi.info/We 2011 9
experiment & data
ScraperWiki https://scraperwiki.co 2009 9
experiment & data
PDF Miner http://www.unixuser.o 2004 9
experiment & data
TAGS https://tags.hawksey.in 2010 9
experiment & data
Import.io https://www.import.io/ 2013 9
experiment & data
Liquid https://getliquid.io/ 2014 9
1degreebio http://1degreebio.org/ 2010 experiment & collect/mine/extr 9
experiment &
Selectscience http://www.selectscien 1999 9
experiment & data
Biocompare http://www.biocompar 2000 9
experiment & data
StrainControl http://www.straincontr 2013 9
experiment & data
Sample of Science https://www.sampleofs 2013 9
experiment & data
Addgene https://www.addgene.o 2004 9
experiment & data
Resource Identification Portal https://scicrunch.com 2014 9
experiment & data
GeoSamples (SESAR) http://www.geosamples 2004 9
experiment & data
BioMedUSA http://biomedusa.org/ 2013 9
experiment & data
DISK http://disk-project.org/ 2016 9
experiment & data
GenomeCompiler http://www.genomecom 2012 9
experiment & data
Tatool http://www.tatool.ch/ 2015 9
experiment & data
Wings www.wings-workflows. 2012 9
experiment & data
Emerald Cloud Lab http://emeraldcloudla 2014 9
experiment & data
Eyewire http://eyewire.org 2012 9
experiment & data
Notes from Nature http://www.notesfromn 2013 9
Experimonths http://science.experi 2009 experiment & collect/mine/extr 9
experiment &
Leukippos http://www.leukippos.o 2010 9
http://crowdtruth.org/ collect/mine/extract
experiment & data
Crowdtruth 2013 9
experiment & data
CurateScience https://curatescience.o 2015 9
automated web-scraping data extraction E/O
chart frequencies of words/short
data extraction E
sentences
collaborative in space
Googlefor Books
journalist led and
data extraction E
citizen participating fact-checking
extract data from pdf tables data extraction E
Extract data from plots, graphs, maps etc data extraction E
extract/scrape tables from PDFs data extraction E
Extracting information from PDF
Google Sheet template which lets you data extraction E
documents
setup and run automated collection of data extraction E
Turning web into
search results data
from (scraping, parsing
Twitter data extraction E
etc.); not restricted to scholarly use data form
mobile data collection E
find reagents & lab products equipment & research samples E
independent, online review resource for
equipment & research samples E
lab equipment and techniques
lab equipment reviews equipment & research samples E
lab inventory for
Marketplace tool(physical) sample equipment & research samples E
sharing. Samples get published and equipment & research samples E/G
receive
plasmid DOI
sharing platform equipment & research samples E
providing, discovering and citing research
resources (organisms, antibodies, tools) equipment & research samples E/G
search
based on and register geosamples and get
RRIDs
sharing and licensing equipment & research samples E
GEOsample ID (IGSN)of biological
research materials and related equipment & research samples E
knowledge
technologies (automate the hypothesize-
Genetic design platformcycle)
(manipulate experiment E
test-evaluate discovery [login and
design everything from single genes to experiment E
Run
entirecomputer
genomes) based experiments (web
semantic workflow system that assists experiment E
and download)
scientists
web-basedwith lifethe designlab
sciences of computational
-run experiment E
experiments in a central lab from
experiments experiment E
anywhere experiment, collaborative or
a
Citizen to in
gameSciencemapthethe
world
brain(Zooniverse)
project (citizen science)
for E/O
outsourced
experiment, collaborative or
transcription of with specimens from E
citizen outsourced
natural science; month-long challenges to
history museums experiment, collaborative or
E
collect data
collaborative in silico synthetic biology outsourced
O/E
research
frameworkinfor thecrowdsourcing
cloud annotation outsourced
online platform to facilitate replication by E
data on text, images and videos outsourced collaborative or
experiment,
aggregating data/syntax files and E/G
outsourced
enabling curation
no account V
https://twitter.com/b 27.3K V
https://twitter.com/a 191 V
no account V
https://twitter.com/i 23.1K V
no account V V V
https://twitter.com/i 80 V
no account V
no account V
no account V
https://twitter.com/Socrates_Logos V V
https://morph.io/
https://books.google.com/ngrams
https://bellingcat.checkdesk.org/en
http://tabula.technology/
http://arohatgi.info/WebPlotDigitizer/
https://scraperwiki.com/
http://www.unixuser.org/~euske/python/pdfminer/index.html
https://tags.hawksey.info/
https://www.import.io/
https://getliquid.io/
http://1degreebio.org/
http://www.selectscience.net/
http://www.biocompare.com/
http://www.straincontrol.com/
https://www.sampleofscience.net/
https://www.addgene.org/
https://scicrunch.com/resources
http://www.geosamples.org/
http://biomedusa.org/
http://disk-project.org/
http://www.genomecompiler.com/
http://www.tatool.ch/
www.wings-workflows.org
http://emeraldcloudlab.com
http://eyewire.org
http://www.notesfromnature.org/
http://science.experimonth.com/
http://www.leukippos.org
http://crowdtruth.org/
https://curatescience.org/
thon/pdfminer/index.html
experiment &
OpenML http://www.openml.org 2013 9
experiment & data
ScienceExchange https://www.sciencee 2011 9
experiment & data
Transcriptic https://www.transcript 2012 9
experiment & data
Quartzy https://www.quartzy.c 2009 9
experiment & data
LabCritics http://www.labcritics. 2013 9
experiment & data
LabSuit www.labsuit.com 2015 9
experiment & data
AssayDepot https://www.assaydep 2014 9
experiment & data
ELIXIR Tools and Data Services R
https://bio.tools/ 2015 9
experiment & data
ELabInventory https://www.elabinven 2011 9
experiment & data
Laboratory Logbook http://lablog.sourcefor 2008 9
experiment & data
LabFolder https://www.labfolder. 2012 9
experiment & data
LabGuru http://www.labguru.co 2012 9
experiment & data
Findings App http://findingsapp.com 2014 9
experiment & data
TypeForm http://www.typeform. 2013 9
experiment & data
Socialsci https://www.socialsci. 2010 9
experiment & data
ProProfs Form maker http://www.proprofs.c 2012 9
experiment & data
Limesurvey https://www.limeservi 2003 9
experiment & data
SurveyMonkey https://www.surveymo 1999 9
experiment & data
Free online Surveys https://freeonlinesurv 2000 9
experiment & data
eSurveys Pro http://www.esurveyspr 2006 9
experiment & data
Survey Gizmo http://www.surveygiz 2006 9
experiment & data
FluidSurveys http://fluidsurveys.com 2008 9
experiment & data
Google Forms http://www.google.com 2014 9
experiment & data
SmartSurvey Academic https://www.smartsurv 2010 9
experiment & data
Qualtrics http://www.qualtrics.c 2015 9
experiment & data
OpenDataKit https://opendatakit.org 2008 9
experiment & data
AllTrials http://www.alltrials.net 2013 9
experiment & data
ClinicalTrials.gov https://clinicaltrials.go 2000 9
experiment & data
Prospero http://www.crd.york. 2011 9
experiment & data
Prolific Academic https://prolificacademi 2015 9
open science machine learning platform
(share and collaborate on data, tasks, O/E
outsourced
workflows,
outsourcingresults)
experiments E
remote, on-demand robotic life science outsourced
E
research
automation labof lab workflow (inventory, outsourced
lab management E
orders, protocols, equipment scheduling)
lab equipment reviews and comparisons lab management E
laboratory inventory management, share
pharmaceutical lab management E
with other labs marketplace for life
science research services (from lab management E
provide information
commercial about analytical tools
suppliers) lab management E/O
and data services for bioinformatics
Web-based laboratory inventory lab management E
document and manage lab data and
lab notebook E
metadata
electronic lab notebook lab notebook E
electronic lab notebook lab notebook E
electronic lab notebook (with some
lab notebook E
protocol sharing)
create surveys online surveys E
data collection platform: design surveys
online surveys E
and recruit from participant pool
Online forms creating and hosting online surveys E
Online survey creating and running online surveys E
online surveys online surveys E
survey tool online surveys E
web surveying tool online surveys E
simple mobile data collection in field, with
online surveys, mobile E
form, cloudfor
campaign storage and visualisation
preregistration of clinical
preregistration G
trials
preregistration of clinical trials preregistration G
preregistration of systematic reviews preregistration G
recruit participants for online studies
recruit participants E
(crowdsourcing)
https://twitter.com/L 1963 V
https://twitter.com/l 36 V
no account V
no account V
https://twitter.com/l 884 V V
no account V
no account V
no account V
https://twitter.com/Q 33.4K V
https://twitter.com/OpenDataKit V
no account V V V
no account V V V V
https://twitter.com/ 2693 V V V V
https://twitter.com/ProlificAc V
http://www.openml.org/
https://www.scienceexchange.com/
https://www.transcriptic.com/
https://www.quartzy.com/
http://www.labcritics.com
www.labsuit.com
https://www.assaydepot.com
https://bio.tools/
https://www.elabinventory.com/
http://lablog.sourceforge.net/
https://www.labfolder.com/
http://www.labguru.com/
http://findingsapp.com/
http://www.typeform.com
https://www.socialsci.com/
http://www.proprofs.com/form/
https://www.limeservice.com/en/
https://www.surveymonkey.com/
https://freeonlinesurveys.com
http://www.esurveyspro.com/
http://www.surveygizmo.com
http://fluidsurveys.com/
http://www.google.com/forms/about/
https://www.smartsurvey.co.uk/academic-research-surveys
http://www.qualtrics.com/
https://opendatakit.org/
V http://www.alltrials.net/
V https://clinicaltrials.gov/
V http://www.crd.york.ac.uk/PROSPERO/
https://prolificacademic.co.uk/
emic-research-surveys
experiment &
ResearchforGood http://www.researchfo 2011 9
experiment & data
Argo web based text mining http://argo.nactem.ac. 2012 9
experiment & data
Hackuarium http://www.hackuarium 2014 9
experiment & data
OpenTrials http://opentrials.net/ 2016 9
experiment & data
eagle-i https://www.eagle-i.ne 2011 9
share notebooks / protocols /
Docollab https://www.docollab. 2014 10
workflows
Sumatra http://neuralensemble 2011 10
workflows
LabArchives http://www.labarchive 2010 10
workflows
HiveBench https://www.hivebenc 2013 10
workflows
OpenWetWare http://openwetware.or 2005 10
workflows
Open Notebook Science http://onsnetwork.org/ 2006 10
workflows
Protocol online www.protocol-online.o 1999 10
workflows
Benchling https://benchling.com/ 2013 10
workflows
Scientific Protocols https://www.scientificp 2014 10
workflows
Protocols.io https://www.protocols.i 2014 10
workflows
Benchfly http://www.benchfly.c 2009 10
workflows
Crowdlabs http://www.crowdlabs. 2010 10
workflows
myExperiment http://www.myexperime 2007 10
workflows
JoVe http://www.jove.com/ 2006 10
workflows
RPubs http://rpubs.com/ 2012 10
workflows
OpenRefine (formerly Google Refhttp://openrefine.org/ 2010 analyze 11
DHbox http://dhbox.org/ 2014 analyze 11
Kepler https://kepler-project.o 2004 analyze 11
Appsoma https://appsoma.com 2013 analyze 11
Kaggle Datasets https://kaggle.com/dat 2016 analyze 11
iPython Notebook (now Jupyter Nhttp://ipython.org/not 2011 analyze 11
GenePattern http://www.broadinstit 2009 analyze 11
Google Cloud Datalab https://cloud.google.c 2015 analyze 11
Jupyter http://jupyter.org/ 2015 analyze 11
Galaxy https://galaxyproject.o 2005 analyze 11
respondent samples for surveys; donates
to charities/non-profits for every recruit participants E
completed
web based survey
text mining text/data mining E
community
locate, match, andandlab share
for biohacking
all publicly open laboratory O
search engine for clinical trials
accessible data and documents on all O
sharing and discovery tool for biomedical data
overview of resources for
clinical trials E/O
resources
Research project management and biomedical research
automated lab management O
publication electronic
of experimentslab notebook for
computational
electronic projects -(commercial
lab notebook aims to aid lab notebook E/G
reproducibility
provider); possibility to publish data lab notebook E/O
electronic
publicly lab notebook with some Open lab notebook O/E
protocols
lab notebooks and community lab notebook O
open (lab)notebook lab notebook O
database of research
data management andprotocols
collaboration research protocol searching O/E
platform to create, find, and discuss research protocol sharing O/E
open source, open access scientific
protocols research protocol sharing O
protocols
sharing protocols research protocol sharing O
video protocols and video platform for
research protocol sharing O/E
scientists
share Vistrails workflows sharing workflows O
sharing workflows, esp. in bioinformatics sharing workflows O Pathways zeich
Video Journal for biomedicine sharing workflows E
web publishing of RMarkdown documents
sharing workflows E/O
created
cleaninginand RStudio
transforming data, extending
cloud-based digital analysis platform/code E/O
data with other datahumanities lab, pre-
from web services
equipped
create, w/ IPython,
execute, RStudio,
and share Omeka,
models and analysis platform/code E
and NLTK.environment for integrating
analyses; analysis platform/code E/O
developing, runningcomponents
disparate software and publishing code
analysis platform/code E
for science applications
discover and analyse public datasets [part
analysis platform/code O/E
of Kaggle] of executable code, txt,
combination
mathematics,
genomic analysis plotsplatform
and media; parallel
that provides
access to hundreds
interactive tool/platformof genomics tools.and
for exploring
analysis platform/code E/O
visualizing
environments data- the future home of
online data manipulation and analysis, for analysis platform/code E
IPython notebook and related language-
biomedical research but in principle field analysis platform/code O/E
agnostic
no account V
https://twitter.com/o 3099 V V
no account V
https://twitter.com/ 404 V V?
https://twitter.com 490 (V) V
https://twitter.com 904 V V V? V V
no account V V?
https://twitter.com/ 1207 (V) V V?
no account V
no account V V?
https://twitter.com 9 V V?
https://twitter.com/ 67.2K V V
https://twitter.com/ 10.5K V V?
no account V (V)
https://twitter.com/ 12.2K V V?
http://www.researchforgood.com/
http://argo.nactem.ac.uk/
http://www.hackuarium.ch/en/
http://opentrials.net/
https://www.eagle-i.net
https://www.docollab.com/
http://neuralensemble.org/sumatra/
http://www.labarchives.com/
https://www.hivebench.com/
http://openwetware.org
http://onsnetwork.org/ or 1st: http://usefulchem.wikispaces.com/
www.protocol-online.org
https://benchling.com/
https://www.scientificprotocols.org
https://www.protocols.io/
http://www.benchfly.com/
http://www.crowdlabs.org/
http://www.myexperiment.org/
http://www.jove.com/
http://rpubs.com/
http://openrefine.org/
http://dhbox.org/
https://kepler-project.org/
https://appsoma.com
https://kaggle.com/datasets
http://ipython.org/notebook.html
http://www.broadinstitute.org/cancer/software/genepattern/
https://cloud.google.com/datalab/
http://jupyter.org/
https://galaxyproject.org/
/usefulchem.wikispaces.com/
r/software/genepattern/
ROpenSci http://ropensci.org/ 2012 analyze 11
Kitware http://www.kitware.co 1996 analyze 11
Arvados http://www.arvados.or 2013 analyze 11
Statcrunch http://www.statcrunch 2004 analyze 11
Wakari https://wakari.io/ 2012 analyze 11
Voyeur/Voyant tools http://voyant-tools.org 2009 analyze 11
Pegasus https://pegasus.isi.edu 2004 analyze 11
Statcheck http://statcheck.io/ 2016 analyze 11
BOINC http://boinc.berkeley.e 2002 analyze 11
Folding@home http://folding.stanford 2000 analyze 11
Open Science Grid http://www.openscienc 2004 analyze 11
Project Noah http://www.projectnoah 2010 analyze 11
Socientize http://www.socientize. 2012 analyze 11
Foldit http://fold.it/ 2008 analyze 11
Snapzen https://snapzen.com/s 2013 analyze 11
Zooniverse https://www.zoonivers 2007 analyze 11
SETI@home https://seti.berkeley.e 1999 analyze 11
Galaxy Zoo (part of Zooniverse) http://www.galaxyzoo. 2007 analyze 11
Crowdfindings http://www.crowdedth 2014 analyze 11
SciStarter http://scistarter.com/ 2011 analyze 11
Polymath http://michaelnielsen. 2009 analyze 11
Crowdcrafting http://crowdcrafting.or 2011 analyze 11
Synapse (Sage) https://www.synapse.o 2014 analyze 11
GCAT http://www.bioplanet. 2013 analyze 11
Nomenklatura http://nomenklatura.ok 2012 analyze 11
Plasmid.io http://www.shazino.co 2013 analyze 11
Riffyn http://riffyn.com/ 2014 analyze 11
Opendatafit http://opendatafit.org/ 2016 analyze 11
QIword https://qiword.co/ 2014 visualize 12
Debategraph http://debategraph.org 2008 visualize 12
data/literature/metric/visualization etc.
software solutions (many open-source) analysis platform/code E
repositories/search engines to R using
and support services for
Virtual environment enabling data-intensive analysis platform/code E/O
R&D
reproducibility of data analysis with analysis platform/code G
versioned
web-basedscripts and tools
data analysis analysis platform/code E
web-based python data analysis analysis platform/code E
web-based text analysis environment analysis platform/code E/O
workflow management platform that helps
workflow-based
check a PDF or HTML applications
file forexecute
errors in
checking statistical reporting G/E
statistical reporting
open source software for volunteer and
Distributed computing project which collaboative computing O/E
grid computing
studies protein folding, misfolding, collaborative computing O/E
software
aggregation,to support collaborative
and related diseases collaborative computing E
computing crowdsourced/collaborative
citizen
citizen science
science (studying
network forwildlife)
infrastructure O
analysis
crowdsourced/collaborative
providers and researchers to recruit E
analysis
participants
citizen science project in protein folding E
collaboratively discuss / analyze screen analysis
G
captures analysis
crowdsourced
crowdsourced analysis
computer(citizen
power science)
for O/E
analysis
analysis (citizen science); finding E
analysis
intelligent
crowdsourced life outside
scienceearth E
analysis
Crowdsourced social science analysis E/O
analysis
database of citizen science projects E/O
massively collaborative online analysis
E/G
mathematical
online tool for projects
making crowdsourcing analysis
E
projects
platform for "open collaborative data analysis
G
analysis"
share and compare results of different analysis
G
analysis tools on same datasets analysis
data cleaning - alias reconciliation data cleaning E
Manage plasmids lab management E
Process design and analysis software for
open source research
tools and and
information to process management G/E
reproducible development
collect, fit (model) and store experimental analysis platform/code E/O
Analyze
data (esp. keyword interaction from a library
biomedicine) create graphs E
of papers
cloud based platform for mapping and
create graphs E/O
supporting debates
https://twitter.com/ 12K V V
no account V
no account V
no account V
https://twitter.co 919 (V) V
https://twitter.com/F 1262 V
no account V
https://twitter.com/S 8561 V? V
(V)
no account V
no account V
no account V
https://twitter.com/ri 308 V
https://twitter.com/o 194 V
https://twitter.com/q 434 V
http://ropensci.org/
http://www.kitware.com
http://www.arvados.org/
http://www.statcrunch.com/
https://wakari.io/
http://voyant-tools.org/
https://pegasus.isi.edu/
V http://statcheck.io/
http://boinc.berkeley.edu/
http://folding.stanford.edu/
http://www.opensciencegrid.org/
http://www.projectnoah.org/
http://www.socientize.eu
http://fold.it/
https://snapzen.com/screen-capture
https://www.zooniverse.org/
https://seti.berkeley.edu/
http://www.galaxyzoo.org/
http://www.crowdedtheory.com/
http://scistarter.com/
http://michaelnielsen.org/polymath1/
http://crowdcrafting.org/
https://www.synapse.org/
http://www.bioplanet.com/gcat
http://nomenklatura.okfnlabs.org/
http://www.shazino.com/#plasmidio
http://riffyn.com/
http://opendatafit.org/
https://qiword.co/
http://debategraph.org
Datahero https://datahero.com/ 2011 visualize 12
Plot.ly https://plot.ly 2012 visualize 12
Google Charts https://developers.goo 2008 visualize 12
Datawrapper https://datawrapper.de 2012 visualize 12
Tableau http://www.tableau.co 2003 visualize 12
Google Fusion Tables https://support.googl 2009 visualize 12
Timeline.js http://timeline.knightl 2013 visualize 12
Circos table viewer http://mkweb.bcgsc.ca 2010 visualize 12
Lynks https://lynksoft.com/ 2014 visualize 12
Raw http://raw.densitydesig 2013 visualize 12
TAGS Explorer http://hawksey.info/ta 2011 visualize 12
Palladio palladio.designhumani 2014 visualize 12
Image-maps http://www.image-map 2008 visualize 12
World Map http://worldmap.harva 2011 visualize 12
CartoDB https://cartodb.com/ 2012 visualize 12
Ushahidi Platform https://www.ushahidi. 2008 visualize 12
Worldmap Harvard http://worldmap.harva 2011 visualize 12
VOS Viewer www.vosviewer.com 2010 visualize 12
Nodegoat http://nodegoat.net/ 2014 visualize 12
VisualEyes http://www.viseyes.or 2009 visualize 12
Desmos https://www.desmos. 2011 visualize 12
Onodo https://onodo.org/ 2015 visualize 12
Penelope http://www.peneloper 2015 write (+ code) 13
ASCII doctor http://asciidoctor.org/ 2013 write (+ code) 13
Pandoc http://pandoc.org/ 2006 write (+ code) 13
Collage Authoring Environment https://collage.elsevie 2011 write (+ code) 13
RMarkdown http://rmarkdown.rstu 2014 write (+ code) 13
Knitr http://yihui.name/knitr/ 2011 write (+ code) 13
Sweave http://www.statistik.l 2002 write (+ code) 13
Activepapers http://www.activepaper 2013 write (+ code) 13
cloud-based data analysis and
create graphs E
visualization (charts and dashboards)
create graphs (collaboratively) create graphs E
create live and interactive charts in your
create graphs E
browser
creating charts and maps online create graphs E
data visualization software (also online) create graphs E
data visualization web application to
create graphs E
gather, visualize, and share data tables
interactive timeline visualizations create graphs E
Online application of Circos to visualize
create graphs E
tabular data
online networks visualization create graphs E
Open web app to create custom vector-
create graphs E
based visualizations
visualize using(based
Twitter networks D3.js library
on
create graphs E
TAGS)
web-based visualization tool for complex
create graphs E
humanities data
making clickable image-maps create images E
Build maps and other geospatial
create maps E
visualizations
creation and hosting of dynamic online
create maps E
maps
Interactive mapping of social media data create maps E/O
Online map creation create maps E/O
network visualization
create network visualizations E
web-based data management, analysis &
create network visualizations E
visualisation
online creationenvironment
of visual and dynamic
create web presentations E
presentations
Creating graphs for (mathematical)
create graphs E
functions
online network
checking visualization
manuscripts for common create network visualizations E
scientific errors (including compliance with checking manuscripts E/G
Ruby tool for AsciiDoc>HTML5
guidelines) conversion E
conversion
Text format converter conversion E
authoring environment for executable creating dynamic/executable
E
publications
combine manuscript writing with publications
creating dynamic/executable
G/E
Markdown with code,
dynamic reporting withplots & data from R
R; facilitate publications
E/G
reproducible
embed R code research
for complete data publications
File format for publishing E/G
analyses in LaTeX documents publications
code/computations: data plus code E
publications
working on those data
no account V V
no account V V
no account V
no account V V
no account V V
no account V V
no account V
no account V
no account (V) V
no account V
https://twitter.com/x 9521 (V) V
no account V V
https://datahero.com/
https://plot.ly
https://developers.google.com/chart/
https://datawrapper.de/
http://www.tableau.com/
https://support.google.com/fusiontables/answer/2571232
http://timeline.knightlab.com/
http://mkweb.bcgsc.ca/tableviewer/
https://lynksoft.com/
http://raw.densitydesign.org/
http://hawksey.info/tagsexplorer/
palladio.designhumanities.org
http://www.image-maps.com/
http://worldmap.harvard.edu/
https://cartodb.com/
https://www.ushahidi.com/
http://worldmap.harvard.edu/
www.vosviewer.com
http://nodegoat.net/
http://www.viseyes.org/viseyes.htm
https://www.desmos.com
https://onodo.org/
http://www.peneloperesearch.com/
http://asciidoctor.org/
http://pandoc.org/
https://collage.elsevier.com/
http://rmarkdown.rstudio.com/
http://yihui.name/knitr/
http://www.statistik.lmu.de/~leisch/Sweave/
http://www.activepapers.org/
bles/answer/2571232
Shiny http://shiny.rstudio.co 2014 write (+ code) 13
PaperRater http://www.paperrater 2009 write (+ code) 13
AJE (American Journal Experts) http://www.aje.com/en 2004 write (+ code) 13
Peerwith https://www.peerwith. 2015 write (+ code) 13
Comwriter http://comwriter.com/ 2013 write (+ code) 13
Markdown https://en.wikipedia.o 2004 write (+ code) 13
COBWEB http://cochrane.fr/writ 2015 write (+ code) 13
Draft https://draftin.com/ 2013 write (+ code) 13
Typewrite https://typewrite.io/ 2014 write (+ code) 13
Overleaf https://www.overleaf. 2014 write (+ code) 13
BlueLaTeX https://www.bluelatex. 2011 write (+ code) 13
Poetica http://poetica.com 2014 write (+ code) 13
Penflip https://www.penflip.co 2013 write (+ code) 13
WriteLaTeX https://www.overleaf. 2012 write (+ code) 13
Manuscript App http://www.manuscrip 2015 write (+ code) 13
Scalar http://scalar.usc.edu/s 2012 write (+ code) 13
ShareLatex https://www.sharelate 2012 write (+ code) 13
Quip https://quip.com/ 2013 write (+ code) 13
Fiduswriter http://www.fiduswriter. 2013 write (+ code) 13
Authorea https://www.authorea. 2012 write (+ code) 13
Papeeria https://papeeria.com/ 2013 write (+ code) 13
Google Docs https://drive.google.c 2007 write (+ code) 13
Google Drive https://drive.google.c 2012 write (+ code) 13
Sci.ai http://sci.ai/ 2016 write (+ code) 13
NoodleTools http://www.noodletool 1999 write (+ code) 13
Git http://git-scm.com/ 2005 write (+ code) 13
LateX http://www.latex-projec 1984 write (+ code) 13
Dexy http://www.dexy.it/ 2010 write (+ code) 13
Stackedit https://stackedit.io/ 2013 write (+ code) 13
RASH https://rawgit.com/es 2014 write (+ code) 13
turning R code into web application creating web applications E/O
online grammar check; plagiarism
improving drafts E
detector, writing
proofreading, suggestions
translation, editing by PhD
improving drafts E
students
manuscript editing services [marketplace] manuscript editing marketplace E
Online template based writing online writing E
Simplewriting
online text editing markup
template, language to
preformatted online writing E
online writing with restricting
comply with CONSORT guidelines for G
(collaboratively) format
reporting trials writing and versioning online writing, also
E
drafts
A simple, real-time collaborative writing collaboratively
online writing, also
broad platform for (collaborative) writing E
environment. collaboratively
with easy links for reviewing and O
collaboratively
publishing
collaborative[was: WriteLaTeX]
document writing/editing E
collaboratively
collaborative online text editor for teams E
collaboratively
collaborative writing and version control E
collaboratively
collobarative
Dedicated editor simulataneous
for planning,LaTex editing
outlining, E
collaboratively
editing,
free, opencollaborating and sharing
source authoring and of E
collaboratively
scholarly research
publishing platform; combining media and E/O
LaTex collaborative editor/sharing collaboratively
semantic E
oline collaborative
platform (paid) writing and document collaboratively
sharing / "productivity app"; also E
Online (collaborative) text editing with collaboratively
spreadsheets E
simple ref manager and image database collaboratively
online colloborative writing O
online LaTeX editor and plot compiler for collaboratively
E
collaborative writing
online text/spreadsheet/presentation collaboratively
E
editing
online text/spreadsheet/presentation collaboratively
scholarly E
editing writing platform as add-on to collaboratively
Google
teachingDocs,
tool forcreating machine
collaborative readable
research G/E
collaboratively
papers
and writing, note taking, reference E
collaboratively
management
Version controland fordrafting
websites and software version control E
command controlled text
writing E
editing/formatting
documentation tool for writing documents
Markdown editor based on PageDown, writing E
incorporating code
the Markdown library used by Stack writing E
simple html markup language using only
Overflow. writing E
24 elements
no account V
no account V
no account V
https://twitter.com/ 12K V
https://twitter.com/o 26.7K V (V)
https://twitter.com/w 72 V
https://twitter.com/q 8340 V
https://twitter.com/f 337 V
https://twitter.com/ 1.65M V V
https://twitter.com/ 1.65M V V (also collectively)
no account V (V)
no account V
https://twitter.com/d 537 V
no account V
http://shiny.rstudio.com/
http://www.paperrater.com/
http://www.aje.com/en
https://www.peerwith.com/
http://comwriter.com/
https://en.wikipedia.org/wiki/Markdown
http://cochrane.fr/writingtool/testwebsite
https://draftin.com/
https://typewrite.io/
(V) https://www.overleaf.com/
https://www.bluelatex.org
http://poetica.com
https://www.penflip.com/
https://www.overleaf.com/
http://www.manuscriptsapp.com/
http://scalar.usc.edu/scalar/
https://www.sharelatex.com/
https://quip.com/
http://www.fiduswriter.org/
(V) https://www.authorea.com/
https://papeeria.com/
https://drive.google.com
https://drive.google.com
http://sci.ai/
http://www.noodletools.com/
http://git-scm.com/
http://www.latex-project.org/
http://www.dexy.it/
https://stackedit.io/
https://rawgit.com/essepuntato/rash/master/documentation/index.html
h/master/documentation/index.html
Scrivener http://www.literaturea 2007 write (+ code) 13
Pipeline (from PubRef) https://pubref.org 2014 write (+ code) 13
CitationStyles http://editor.citationst 2013 cite 14
Citation Style Language Style rephttps://www.zotero.org 2010 cite 14
Fore-Cite http://www.fore-cite.c 2014 cite 14
Crossref DOI Citation formatter http://crosscite.org/cit 2012 cite 14
Perma.cc https://perma.cc/ 2013 cite 14
Amber http://amberlink.org/ 2014 cite 14
WebCite http://www.webcitation 1997 cite 14
ScientificCitations http://www.scientificcit 2012 cite 14
Binder http://mybinder.org/ 2015 archive/share code 16
GitHub https://github.com/ 2008 archive/share code 16
GitLab.com https://about.gitlab.co 2014 archive/share code 16
BitBucket https://bitbucket.org/ 2010 archive/share code 16
RunMyCode http://www.runmycode. 2012 archive/share code 16
archive/share data (incl.
Exec&Share www.execandshare.or 2013 16
video)
Research Compendia http://researchcompen 2013 archive/share code 16
Neurovault http://neurovault.org/ 2013 17
video)
ASLC http://ascl.net/ 1999 17
video)
BioLINCC https://biolincc.nhlbi. 2013 17
video)
Global biodiversity information fachttp://www.gbif.org/ 2004 archive/share data (incl. video) 17
Databrary http://databrary.org/ 2013 17
video)
World Data System http://www.icsu-wds.or 2007 17
video)
Pangaea http://www.pangaea.de 1995 17
video)
ICPSR https://www.icpsr.umi 1962 17
Knowledge network for video)
https://knb.ecoinformat 2004 17
Biocomplexity video)
1000 Functional Connectomes http://fcon_1000.projec 2009 17
video)
DataOne (Data Observation Netwo https://www.dataone.o 2009 17
video)
OpenSNP https://opensnp.org/ 2011 17
video)
MLA CORE https://commons.mla.o 2015 17
video)
text editing software writing E
collaborative writing platform E
collaboratively
Find and edit CSL citation styles citation styles E
searchable version of the CSL style
citation styles E
repository
aggreates full text OA for suggesting
citation suggestions E
references to cite + citation context
Formatpermanent
create citation from DOIpermalinks are
links; create citation E
'vested' by journals and archived by create permalinks, for citing G
libraries
perputual archiving of links on web pages create permalinks, for citing E
storing webpages for permalink for
create permalinks, for citing E
referencing
Post-publication citation post-pub citation adding G
running Executable Jupyter/IPython
code execution platform O/E
Notebooks Directly from Github
code sharing and archiving code repository O
Git repository management +
code repository E
collaboration (free)
Sharing code code repository E
Sharing code and
run computer codedata
associated with code repository O/G
scientific publications, using own data and code repository, executable G/O
Share software
parameter valuesand data associated with
code repository, executable G
a publication
data repository for neuroimaging data archive, field specific E/O
astrophysics code repository code repository O/E
A biologic specimen and data repository data archive, field specific O
archive biodiversity data data archive, field specific O
data and video sharing for human and
data archive, field specific O/G
animal development
Data archive researchand space
for geoscience
science data voor geo- and environmental
Data archive
data archive, field specific O
and ecological sciences
Data archive, esp. for social science data archive, field specific E/O
Data archiving repository for ecology &
environmental science
data repository for fMRI images data archive, field specific O/G
distributed framework for open, persistent
access to Earth observational
public database data
for direct-to-customer
genetic testforresults
repository language studies: all pub
data archive, field specific O
types and media types
no account V
https://twitter.com/f 40 V V
no account V
no account V
no account V V (archiving)
https://twitter.com/s 57 V?
no account V
https://twitter.com/g 1.22M V V
https://twitter.com/g 40.8K V
no account V
no account V
no account V
no account V
no account V V
https://twitter.com/n 299 V V
no account V
http://www.literatureandlatte.com/scrivener.php
https://pubref.org
http://editor.citationstyles.org
https://www.zotero.org/styles
V http://www.fore-cite.com/
http://crosscite.org/citeproc/
https://perma.cc/
http://amberlink.org/
http://www.webcitation.org/
http://www.scientificcitations.org/
http://mybinder.org/
https://github.com/
https://about.gitlab.com/gitlab-com/
https://bitbucket.org/
http://www.runmycode.org/
www.execandshare.org
http://researchcompendia.org/
http://neurovault.org/
http://ascl.net/
https://biolincc.nhlbi.nih.gov/home/
http://www.gbif.org/
http://databrary.org/
http://www.icsu-wds.org/
http://www.pangaea.de/
https://www.icpsr.umich.edu
https://knb.ecoinformatics.org/
http://fcon_1000.projects.nitrc.org/
https://www.dataone.org/
https://opensnp.org/
https://commons.mla.org/core/
Patientslikeme https://www.patientsl 2006 17
video)
Gene Expression Omnibus (GEOhttp://www.ncbi.nlm.ni 2000 17
video)
Openfmri https://openfmri.org/ 2011 archive/share publication 17
Figshare https://figshare.com/ 2011 17
video)
Dryad http://datadryad.org/ 2008 17
video)
Mendeley data https://data.mendeley 2015 17
video)
Dataverse http://dataverse.org/ 2006 17
video)
DataHub https://datahub.io/ 2006 archive/share data (incl. video) 17
Arkivum http://arkivum.com/ 2011 17
video)
B2Share https://b2share.eudat. 2013 17
video)
Zenodo http://zenodo.org/ 2013 17
video)
repositive.io https://repositive.io/ 2015 17
video)
DataOne Dash https://oneshare.cdlib. 2014 17
video)
DDI http://www.ddialliance. 2000 17
video)
Academic Torrents http://academictorrent 2014 archive/share data (incl. video) 17
Morphomuseum http://morphomuseum 2014 archive/share data (incl. video) 17
re3data http://www.re3data.org 2012 17
video)
ScienceMedia http://www.science-me 2014 archive/share data (incl. video) 17
LabTube http://www.labtube.tv/ 2009 archive/share data (incl. video) 17
PsychFileDrawer http://psychfiledrawer. 2011 archive/share publication 18
Dissem.in Dissem.in 2015 archive/share publication 18
Cureus http://www.cureus.com 2012 archive/share publication 18
DropdeadPaper http://dropdeadpaper. 2015 archive/share publication 18
Open Science Repository http://www.open-scien 2012 archive/share publication 18
MyOpenArchive [dead] http://myopenarchive.o 2007 archive/share publication 18
HAL https://hal.archives-ou 2006 archive/share publication 18
MPRA https://mpra.ub.uni-m 2006 archive/share publication 18
viXra http://vixra.org/ 2009 archive/share publication 18
Preprints.org https://www.preprints. 2016 archive/share publication 18
EngrXiv https://osf.io/view/engr 2016 archive/share publication 18
Share health experiences and data data archive, field specific O
sharing genomics data data archive, field specific O
O
sharing MRI datasets data archive, field specific
data archive, multi field, multi
data archiving and sharing O
cloud storage and sharing of datasets, format
data archive, multi-field O
CC-0 and article-linked
data archiving and sharing data archive, multi-field O
data archiving. mostly for ongoing
projects in the Netherlands
data repository data archive, multi-field O
E
Data storage/archive (no sharing) data archive, multi-field
general data repository, part of EUdat data archive, multi-field O/E
OA repository for EU funded data and
publications
Platform for genomics data discovery and
data archive, multi-field O/G
collaboration
self-service data repository (part of
international data archive, multi-field E/O
DataOne) effort to create a standard to
describe statistical and social science data standard, field specific G/E
distributed
data system for sharing large
distributed data-archiving E
datasets
Journal for 3D models and datasets innovative journal O
registry of research data repositories registry of data repositories E
platform for publishing scientific videos
video archive O
(with doi)
video platform for life science video archive E/O
Upload and view results of replication
archive of replication studies G
attempts in Experimental
various sources Psychology
and analyzing OA
archiving promotion tool O
availability of publications of researchers
open access medical journal (also for
innovative journal O
posters) using PPPR
archive (unpublished) papers multifield repository O
institution
Open Access independent
repositoryOA repository
created for multifield repository O
researchers at institution without an multifield repository O
institutional OA repository, multidisciplinary
French openrepository
archive O
"pre-print" repository for economics,
preprint archiving O/E
connected to RePEc
Alternative preprint server
Free (not-for-profit) open access preprint archiving O
multidisciplinary preprint platform, preprint archiving O
preprint
supported archive for engineering, run on
by MDPI preprint archiving O
OSF
no account V V
https://twitter.com/f 27.9K V V V
no account V V
no account V
no account V
https://twitter.c 1532 V
https://twitter.com/r 891 V V
no account V V
no account V
no account V V
no account V V
no account V
https://twitter.com/h 2988 V
no account V
no account V
https://www.patientslikeme.com/
http://www.ncbi.nlm.nih.gov/geo/
https://openfmri.org/
https://figshare.com/
http://datadryad.org/
https://data.mendeley.com
http://dataverse.org/
https://datahub.io/
http://arkivum.com/
https://b2share.eudat.eu
http://zenodo.org/
https://repositive.io/
https://oneshare.cdlib.org/xtf/search
http://www.ddialliance.org/
http://academictorrents.com/
http://morphomuseum.com/
http://www.re3data.org/
http://www.science-media.org/
http://www.labtube.tv/
V http://psychfiledrawer.org/
Dissem.in
V http://www.cureus.com/
http://dropdeadpaper.com/
http://www.open-science-repository.com/
http://myopenarchive.org/
https://hal.archives-ouvertes.fr/
https://mpra.ub.uni-muenchen.de/
http://vixra.org/
https://www.preprints.org/
https://osf.io/view/engrxiv/
PsyArXiv https://osf.io/view/psya 2016 archive/share publication 18
SocArXiv https://osf.io/view/soca 2016 archive/share publication 18
ArXiv http://arxiv.org/ 1991 archive/share publication 18
SSRN www.ssrn.com/ 1994 archive/share publication 18
BioRxiv http://biorxiv.org/ 2013 archive/share publication 18
CogPrints http://cogprints.org/ 1997 archive/share publication 18
PeerJ preprints https://peerj.com/prepr 2013 archive/share publication 18
Europe Pubmed Central http://europepmc.org/ 2012 archive/share publication 18
PMC (PubMed Central) http://www.ncbi.nlm.n 2000 archive/share publication 18
PhilSci archive http://philsci-archive.p 2001 archive/share publication 18
ePosters http://www.eposters.ne 2009 archive/share posters 19
Science Open Posters https://www.scienceop 2014 archive/share posters 19
SlideShare http://www.slideshare. 2006 archive/share presentation 20
Slideplayer http://slideplayer.com/ 2014 archive/share presentation 20
Speakerdeck https://speakerdeck.c 2011 archive/share presentation 20
SciVee http://www.scivee.tv/ 2007 archive/share presentation 20
GlobalEventList http://www.globalevent 2013 present research findings 21
Lanyrd http://lanyrd.com 2010 present research findings 21
Sciencesconf http://www.sciencesco 2010 present research findings 21
Virtually Connecting http://virtuallyconnecting.org/ present research findings 21
Omeka.net https://www.omeka.net 2010 present research findings 21
Open Conference Systems https://pkp.sfu.ca/ocs/ 2000 present research findings 21
Sched https://sched.org/ 2008 present research findings 21
ConfTool http://www.conftool.ne 2004 present research findings 21
LOD for conferences Springer http://lod.springer.co 2015 present research findings 21
CEUR-WS http://ceur-ws.org/ 1995 present research
peer review and findings 21
BMJ Open: Open peer review http://bmjopen.bmj.co 2011 commenting/recommending
peer review and 22
Axios Review http://axiosreview.org/ 2013 (pre-pub)
commenting/recommending 22
peer review and
Peerage of Science https://www.peerageof 2010 (pre-pub)
peer review and
Rubriq http://www.rubriq.com/ 2012 (pre-pub)
(pre-pub)
preprint archive for psychology, run on
preprint archiving O
OSF
preprint archive for social sciences, run
on OSF
preprint server preprint archiving O/G
preprint server preprint archiving O
preprint server preprint archiving O
preprint server in cognitive sciences preprint archiving O
publish preprint articles submitted to
PeerJ but also others (CC-BY)
ful text OA archive in life/health subject repository O
full text repository of deposited medical
subject repository O
literature
preprint archive for philosophy of science preprint archiving O
O
poster archive for life and geosciences share posters
poster archiving/sharing share posters O
Share presentations share presentations O
Share presentations share presentations E/O
Share presentations, upload slides as pdf share presentations O
science video sharing platform (from
share presentations, videos O
journals, conferences,
comprehensive education)
directory of scientific
conference directory E
events worldwide
social conference directory conference directory, social E
platform for organizing conferences organize conferences/events E
Virtual participation in academic
sharing confernce participation E/O
conferences
webbased CMS for easy website building,
website building platform E
targeting humanities
Conference website publishing tool organize conferences/events E
event planning organize conferences/events E
facilitate conference organization organize conferences/events E
ID for conferences (in computer science) ID, for conferences E
publishing platform for workshop proceedings platform, field
E/O
proceedings (computer science) specific
open peer review innovative journal G/O
independent peer review service
journal independent peer review G
(commercial)
journal independent peer review journal independent peer review G
journal independent peer review journal independent peer review G
no account V V
https://twitter.com/b 9449 V V
no account V V
https://twitter.co 2801
no account V
no account V V
no account V
https://twitter.com/l 11.3K V (conferences)
no account V
no account V
no account V
no account V V
https://twitter.co 10K V (peer review)
https://twitter.com/ 570 V (peer review)
https://twitter.com 904 V (peer review)
https://osf.io/view/psyarxiv/
https://osf.io/view/socarxiv/
http://arxiv.org/
Elsevier Acquires the Social Science Research www.ssrn.com/
(V) http://biorxiv.org/
http://cogprints.org/
https://peerj.com/preprints
http://europepmc.org/
http://www.ncbi.nlm.nih.gov/pmc/
http://philsci-archive.pitt.edu/
http://www.eposters.net/
https://www.scienceopen.com/collection/scienceopen_posters
http://www.slideshare.net/
http://slideplayer.com/
https://speakerdeck.com/
http://www.scivee.tv/
http://www.globaleventslist.elsevier.com/
V (conferences) http://lanyrd.com
http://www.sciencesconf.org/
http://virtuallyconnecting.org/
https://www.omeka.net/
https://pkp.sfu.ca/ocs/
https://sched.org/
http://www.conftool.net/en/index.html
http://lod.springer.com/data/search
http://ceur-ws.org/
http://bmjopen.bmj.com/
http://axiosreview.org/
https://www.peerageofscience.org/
V http://www.rubriq.com/
tion/scienceopen_posters
peer review and
BMJ (British Medical Journal) http://www.bmj.com/t 1999 commenting/recommending
peer review and 22
Haldane's Sieve http://haldanessieve.o 2012 (pre-pub)
peer review and
Scirate https://scirate.com 2007 (pre-pub)
peer review and
SelectedPapers https://selectedpapers 2013 (pre-pub)
peer review and
VoxCharta http://harvard.voxchar 2009 (pre-pub)
peer review and
PRE-val http://pre-val.org/ 2014 (pre-pub)
peer review and
Publons https://publons.com/ 2013 (pre-pub)
peer review and
ReviewerCredits reviewercredits.com 2016 (pre-pub)
peer review and
ReviewerRecognition https://www.reviewerre 2014 (pre-pub)
peer review and
ReviewerPage https://www.reviewer 2015 (pre-pub)
peer review and
Libre Liberating Research (dead?http://lib-res.org/ 2013 (pre-pub)
Academic Karma http://academickarma. 2014 (pre-pub)
peer
peer review
review and
and commenting/r 22
Reproducability initiative (by Sc http://validation.scien 2012 commenting/recommending
peer review and 22
SciPost https://scipost.org 2016 (pre-pub)
Scientific Journal Finder http://www.sjfinder.co 2014 (pre-pub)
select journal to submit to 23
Edanz journal selector https://www.edanzediti 2012 select journal to submit to 23
Jane http://www.biosemantic 2007 select journal to submit to 23
eTblast http://etest.vbi.vt.edu/ 2004 select journal to submit to 23
Journal Guide https://www.journalgu 2014 select journal to submit to 23
Cabell directories http://www.cabells.co 1978 select journal to submit to 23
ROAD http://road.issn.org/ 2013 select journal to submit to 23
Enago journal information tool http://www.enago.com/ 2013 select journal to submit to 23
DOAJ (Directory of Open Access https://doaj.org/ 2003 select journal to submit to 23
Sherpa/ROMEO http://www.sherpa.ac. 2006 select journal to submit to 23
CoFactorScience http://cofactorscience 2014 select journal to submit to 23
ThinkCheckSubmit http://thinkchecksubmi 2015 select journal to submit to 23
Scirev https://scirev.sc/ 2013 select journal to submit to 23
JournalReviewer http://journalreviewer. 2013 select journal to submit to 23
Journalysis http://www.journalysis. 2013 select journal to submit to 23
SciForum Journal Reviews http://sciforum.net/statistics select journal to submit to 23
non-anonymous peer review
Journal with non-anonymous peer review O/G
blog discussing selected preprints in (pre-publication)
paper commenting, dicussing or
E/G
genetics rating
rate and comment on ArXiV papers G
recommend, comment, discuss papers (in rating
E/G
maths
voting & and astrophysics)
discussion on ArxiV papers for rating
peer G/E
>200 review evaluation + badge (for
institutions rating
publishers to buy into, for end-users to peer review evaluation G
use)
crediting peer review activity peer review registration G
crediting peer review activity peer review registration G
Documenting peer review for Elsevier
peer review registration E
journals
Publicly crediting peer review for Elsevier
peer review registration G
reviewers, open for PR from all journals
open peer review platform for open peer review G/O
peer review platform, connecting authors,
platform for peer review E
reviewers
crowdsourced and editors
validation of experimental
Publication platform/journal for physics reproducibility G
results
from
journala.o. arXiv, with own
recommender open
based onpeer
title and innovative journal O/G
review functionality find journal, matching your
abstract of scientific manuscript in life E
abstract/text
find journal, matching your
sciences
journal selecting for submitting E
journal selection support with co-word abstract/text
E
analysis
search PubMed PMC ArXiv etc using text abstract/text
E
similarity abstract/text
selection of journals to submit paper to E
Directory of journal parameters abstract/text
journal list, metrics, metadata E
directory of OA scholarly resources (from
journal list, metrics, metadata O
ISSN registry)
get basic journal data and metrics journal list, metrics, metadata E
listing OA journals journal list, metrics, metadata O
show publisher copyright policies & self-
journal list, metrics, metadata O
archiving
consultancy:rights
workshops, editing, journal
journal recommendation E
selector
Checklist with criteria to judge
journal review criteria E
trustworthiness of journals
journal evaluation by authors journal reviews E
platform for rating/reviewing journals (with
journal reviews E/G
journal statistics)
https://twitter.com/ 235K V (also peer review)
https://twitter.com/s 135
no account
no account
no account V (peer review)
https://twitter.com/l 8 V (peer review)
https://twitter.com/_ 32 V
no account V
no account V V
no account V
suspended V
no account V
https://twitter.com/j 496 V
http://www.bmj.com/theBMJ
V http://haldanessieve.org/
V https://scirate.com
V https://selectedpapers.net/
V http://harvard.voxcharta.org/
V http://pre-val.org/
V https://publons.com/
V reviewercredits.com
V https://www.reviewerrecognition.elsevier.com/
V https://www.reviewerpage.com/
http://lib-res.org/
http://academickarma.org/
V http://validation.scienceexchange.com/#/reproducibility-initiative
V https://scipost.org
http://www.sjfinder.com/
https://www.edanzediting.com/journal-selector
http://www.biosemantics.org/jane/
http://etest.vbi.vt.edu/etblast3/
https://www.journalguide.com/
http://www.cabells.com/index.aspx
http://road.issn.org/
(V) http://www.enago.com/publication-support/201.htm
(V) https://doaj.org/
http://www.sherpa.ac.uk/romeo/
http://cofactorscience.com/
http://thinkchecksubmit.org/
(V) https://scirev.sc/
(V) http://journalreviewer.org/
(V) http://www.journalysis.org/
V http://sciforum.net/statistics
m/#/reproducibility-initiative
upport/201.htm
QOAM https://www.qoam.eu/ 2012 select journal to submit to 23
rchiveit https://rchive.it/ 2013 select journal to submit to 23
Open Edition Books http://books.openediti 2013 publish 24
Discrete Analysis https://gowers.wordpre 2015 publish 24
Journal of Digital Humanities http://journalofdigital 2011 publish 24
Biodiversity Data Journal biodiversitydatajourna 2013 publish 24
Scientific Data (Nature) http://www.nature.com 2014 publish 24
DHNOW digitalhumanitiesnow. 2009 publish 24
Wellcome Open Research https://wellcomeopenr 2016 publish 24
ReScience https://rescience.githu 2015 publish 24
Self Journal of Science http://sjscience.org/ 2015 publish 24
Rio (Research ideas & Outcomes)
http://riojournal.com/ 2015 publish 24
Research Involvement and Enga http://researchinvolv 2015 publish 24
IPOL journal http://www.ipol.im/ 2009 publish 24
Audiovisual thinking http://www.audiovisual 2010 publish 24
ZooKeys journal http://www.pensoft.n 2008 publish 24
ScienceOpen Research https://www.scienceop 2014 publish 24
Collabra http://www.collabra.or 2015 publish 24
GigaScience journal http://www.gigascienc 2011 publish 24
eLife http://elifesciences.org 2012 publish 24
F1000Research http://f1000research. 2012 publish 24
PeerJ https://peerj.com 2012 publish 24
PLoS One www.plosone.org 2006 publish 24
Open Library of Humanities https://www.openlibhu 2014 publish 24
Matters https://sciencematters. 2015 publish 24
BMC (BiomedCentral) http://www.biomedcent 2000 publish 24
LingOA http://www.lingoa.eu/ 2015 publish 24
SciELO (Scientific Electronic
http://www.scielo.org 1998 publish 24
Library Online)
PubPub http://www.pubpub.org 2016 publish 24
WebMed Central http://www.webmedcen 2007 publish 24
reviewing OA journals journal reviews E
simple interface for SherpaRomeo (open
finding sharing rights E/O
source)
open digital monographs, part of Open book platform, partly Open
O
Edition (FR) Access
ArXiv
accessoverlay
journaljournal for mathematics
that features the best innovative journal E/O
scholarship, tools, and conversations
Data journal experimenting with innovative journal O/G
produced
communitybypeerthe review
digital humanities
[but check details innovative journal O
data journal for
- how novel is it?]papers describing O
innovative journal
datasets
highlights and distributes informally
innovative journal O/G
published digital humanities scholarship
funder initiated journal innovative journal O/E
GitHub-based journal for replications of
computational studies
aiming to "to achieve optimal peer review,
innovative journal O E
evaluation and classification
integrated authoring of articles
/ publishing / in
journal co-produced by all key innovative journal O/G
reviewing platform
stakeholders, including patients, innovative journal G
academics, policy processing
Journal for image makers and service innovative journal E
O/E
Journal for videos on audiovisual culture innovative journal
journal publishing innovative journal E
OA journal innovative journal O
OA journal innovative journal E/O
OA
OA journal for big-data
megajournal, readerstudies
(eLife Lens), innovative journal O
discovery (Lens Browser), also available innovative journal O
as publishing
Open access software
journal on GitHub innovative journal O
Open Access journal innovative journal O
open access megajournal innovative journal E
open access megajournal for SSH innovative journal O
publish single observations & extend the
innovative journal E/O
subsequent observations in real-time innovative journal
Gold OA publishing O
platform/publisher
innovative journal
OA Publishing platform for linguistics O
Open Access journal platform for Latin platform/publisher
innovative journal
O
America and Iberia
open platform for creating, distributing, platform/publisher
innovative journal
O/G
and reviewing publications.
Open Access biomedical publisher using platform/publisher
innovative publisher O/G
post-publication peer review
no account V
no account V
no account V
https://twitter.com/S 14.4K V
no account V
no account V
https://twitter.com 922 V V V (also peer review)
https://twitter.com 5854 (V) V
https://twitter.com/el 21.8K V V
https://twitter.co 78.6K V
no account V
(V) https://www.qoam.eu/
https://rchive.it/
http://books.openedition.org/
https://gowers.wordpress.com/2015/09/10/discrete-analysis-an-arxiv-overlay
http://journalofdigitalhumanities.org/
biodiversitydatajournal.com
http://www.nature.com/sdata/
digitalhumanitiesnow.org
https://wellcomeopenresearch.org/
https://rescience.github.io/
V http://sjscience.org/
V http://riojournal.com/
http://researchinvolvement.biomedcentral.com/
http://www.ipol.im/
http://www.audiovisualthinking.org/
http://www.pensoft.net/page.php?P=14
V https://www.scienceopen.com/collection/scienceopen_research
(V) http://www.collabra.org/
http://www.gigasciencejournal.com/
http://elifesciences.org/
V http://f1000research.com/
https://peerj.com
V www.plosone.org
https://www.openlibhums.org/
https://sciencematters.io/
http://www.biomedcentral.com/
http://www.lingoa.eu/
http://www.scielo.org
http://www.pubpub.org/
(V) http://www.webmedcentral.com
/09/10/discrete-analysis-an-arxiv-overlay-journal/
tion/scienceopen_research
Archivist https://medium.com/@_ 2015 publish 24
Biotaxa http://biotaxa.org/ 2012 publish 24
Revues.org http://www.revues.org/ 1999 publish 24
Creative Commons http://creativecommon 2002 publish 24
DOI (Digital Object Identifier) http://www.doi.org/ 2000 publish 24
Datacite https://www.datacite.o 2009 publish 24
ProcPoS https://www.peerageof 2014 publish 24
PressForward http://pressforward.org 2011 publish 24
PaperNow https://github.com/Pe 2015 publish 24
dokieli https://dokie.li/ 2016 publish 24
DHcommons journal http://dhcommons.org/ 2015 publish 24
OJS (Open Journal Systems) https://pkp.sfu.ca/ojs/ 2001 publish 24
Wikipedia (& Wikimedia Commonhttps://www.wikipedia. 2001 outreach/valorization 25
Hypotheses http://hypotheses.org/ 2008 outreach/valorization 25
SciLogs http://www.scilogs.com 2011 outreach/valorization 25
iddidd http://scienceblogs.co 2006 outreach/valorization 25
Scientopia http://scientopia.org/ 2010 outreach/valorization 25
ExternalDiffusion http://www.externaldif 2015 outreach/valorization 25
Scienceseeker http://www.sciencesee 2011 outreach/valorization 25
http://www.ecastnetwork.org/
ECAST 2010 outreach/valorization 25
Frontiers for Young Minds http://kids.frontiersin.o 2013 outreach/valorization 25
Sense about Science http://www.senseabout 2002 outreach/valorization 25
Pint of Science http://pintofscience.co 2012 outreach/valorization 25
Voice of Young Science (part of http://www.senseabout 2004 outreach/valorization 25
Open Science Showoff http://www.sciencesho 2011 outreach/valorization 25
I Am Scientist http://imascientist.ie/ 2008 outreach/valorization 25
redditscience AMA (a.o. PLOS S https://www.reddit.com 2012 outreach/valorization 25
Fact Check Central http://factcheckcentral 2015 outreach/valorization 25
SciCheck http://www.factcheck.o 2015 outreach/valorization 25
AskforEvidence http://askforevidence. 2014 outreach/valorization 25
platform for publishing interactive innovative specialized publishing
E
interview transcriptions online
Online publishing platform for taxonomic platform E/O
journal platform
journals
platform for open journals, part of Open
journal platform, Open Access O
Edition (FR)
licensing&copyright for internet era licensing O
permalink and disambiguation of
persistant identifiers E
publications
develop standards for persistent
persistant identifiers, standards E
identifiers
Proceedings for of
data
Peerage of Science: peer-
platform for PPPR O
reviewed
Wordpress commentary
plugin for OA journal
content
republishing O/E
aggregation
Create, edit andand display
distribution/republication
a journal article in
clientside journal article platform, virtual O
GitHub editor for decentralised article innovative journal/publishing,
publishing, annotations and social Allows article authoring from the O
digital humanities journal for reviewing annotations, notifications
interactions innovative journal O
ongoing projects
Editorial services for publishers journal platform E
adding to broad popular
collaborative online general reference tool O
Academic blogging platform, part of Open resource
blogging network O
Edition
Group of science blogs
blogging network E
science blogging network blogging network O
science blogging network blogging network O
science blogging platform blogging network O
Aggregator of science news and blogs blogging network & news E
& Technology - A Distributed Network of
citizen assessment G
Institutions
web-based for Peer tojournal
scientific Peer Public
with an
activities and publications to change citizen review, by children O
editorial board of children (8-15yr)
public discussions about science and debating/discussing G
evidence
Discussing science in a local pub debating/discussing O
encourages early career researchers to
play an active role in public debates about debating/discussing G
science
Open mic night for science lovers debating/discussing E
outreach to students through chat contest debating/discussing O
Discuss your science with broader
discussion O
community
aggregated list of blogs from a selection
fact-checking O
of
factfact checking
checking organisations
scientific claims made by
Tool to ask for toevidence, fact-checking O
US politicians influenceorpublic
to share
policy
experience asking for evidence NB this is fact-checking E/G
part of Sense About Science (ID1047)
no account V
https://twitter.com 604K V? V
no account V V V
https://twitter.com/d 5288 V V
https://twitter.com/pressfwd
1149 V V
no account V V
no account V V V V
no account V
no account V
https://twitter.com/E 6263 V
https://twitter.com/i 14.1K V
no account V
no account V
https://medium.com/@_daniel/publish-interactive-historical-documents-with-a
http://biotaxa.org/
http://www.revues.org/
http://creativecommons.org/
http://www.doi.org/
https://www.datacite.org/
V https://www.peerageofscience.org/proceedings
http://pressforward.org/
https://github.com/PeerJ/paper-now
V Native ReadWriteWeb software. Implementshttps://dokie.li/
W3
V http://dhcommons.org/journal
https://pkp.sfu.ca/ojs/
https://www.wikipedia.org/
http://hypotheses.org/
http://www.scilogs.com/
http://scienceblogs.com/
http://scientopia.org/
http://www.externaldiffusion.com/
http://www.scienceseeker.org/
http://www.ecastnetwork.org/
V
http://kids.frontiersin.org/
http://www.senseaboutscience.org/
http://pintofscience.co.uk/
http://www.senseaboutscience.org/pages/voys.html
http://www.scienceshowoff.org/
http://imascientist.ie/
https://www.reddit.com/r/science/
http://factcheckcentral.org/
http://www.factcheck.org/scicheck/
(V) http://askforevidence.org/index
sh-interactive-historical-documents-with-archivist-7019f6408ee6
ages/voys.html
Draw Science discontinued outreach/valorization 25
Limn limn.it 2011 outreach/valorization 25
JSTOR daily http://daily.jstor.org/ 2014 outreach/valorization 25
United Academics http://www.united-aca 2009 outreach/valorization 25
Research Blogging researchblogging.org 2008 outreach/valorization 25
Elsevier Atlas https://www.elsevier.c 2014 outreach/valorization 25
SocialScienceSpace http://www.socialscie 2011 outreach/valorization 25
HASTAC https://www.hastac.org 2002 outreach/valorization 25
Kudos (pubs claimen en promotehttps://www.growkudo 2013 outreach/valorization 25
Sciworthy sciworthy.com 2013 outreach/valorization 25
Useful Science http://www.usefulscien 2014 outreach/valorization 25
AcaWiki acawiki.org 2008 outreach/valorization 25
STM Digest https://medium.com/ 2015 outreach/valorization 25
Publiscize (dead) discontinued 2014 outreach/valorization 25
ScienceGist [dead March 2015] discontinued 2013 outreach/valorization 25
Nautilus 3 sentence science http://tss.nautil.us/ 2013 outreach/valorization 25
The Conversation http://theconversation 2011 outreach/valorization 25
The Open Notebook http://www.theopenno 2010 outreach/valorization 25
Story Collider http://www.storycollide 2010 outreach/valorization 25
Before the abstract http://www.beforethea 2014 outreach/valorization 25
Famelab http://www.cheltenham 2005 outreach/valorization 25
Three Minute Thesis (3MT) threeminutethesis.org/ 2008 outreach/valorization 25
Open Science World http://opensciencewor 2014 outreach/valorization 25
Real Scientists http://realscientists.or 2013 outreach/valorization 25
Silk https://www.silk.co 2013 outreach/valorization 25
RI Channel www.richannel.org 2012 outreach/valorization 25
Epernicus Network https://www.epernicu 2008 26
network)
Academic Room http://www.academicr 2011 26
network)
Methodspace http://www.methodspa 2010 26
network)
ScholarBridge http://www.scholarbri 2013 26
network)
free journal for communicating exciting innovative journal
research in the social and human innovative journal O
linking
sciences news stories to scholarly research,
with free access
OA publisher; to JSTOR
database articles
of OA research
innovative journal O
papers, dissertations and theses;
collection/curation of blog posts about innovative journal
E
peer-reviewed
Republishing some research
selected high impact platform/publisher
innovative journal, overlay O
articles in lay-friendly format and OA
connect
online SS researchers
community and socialand network
promote forSS online community O
(mainly) DH, geared towards
helps researchers explain, enrich and online community O
education/teaching online promotion/linking of
share their publications to increase O/E
intros to research publications
research impact followed by summary plain language short summaries O
description
Crowdsourced that's
andalso linkedone-sentence
editorial to published
plain language short summaries O
summaries
crowdsourced of research
summaries articles
and literature
reviews of peer-reviewed research
papers with societal impact, published
online and next
popularizing andtospreading
the original article on
science
(news) in author-written "scinopses"
simplified summaries of scientific papers plain language short summaries O
three sentence lay abstracts, by the
independent news and commentary plain language short summaries O
Nautil.us editor(s)
website produced
Background information by academics
on creatingand science journalism O
journalists. Free to read and republish.
stories about science. Writer interviews, storytelling E sharing on OSF
personal stories about
topical features, how science
pitch database & more storytelling O
affects people (podcasts and live events)
storrytelling blog storytelling O
storytelling competition to communicate
storytelling O
science to public
storytelling audience
competition to communicate
Webzine' storytelling G
science to public audiencecan post stories
where scientist
abt research (mostly reprints of stories storytelling E/O
scientists, science writers, communicators
published elsewhere?) using Twitter for outreach O
and policy
simple websitemakers talking
creation aboutontheir lives
based
website creation O/E
database
Platform for or science
spreadsheetvideos from Ri and
video platform E
across the web
academic
academic social
social network
network - open academic social network E
communities
community around SAGEacademic
to organize Research academic social network E
content
Methods academic social network E
connecting students and professors who
academic social network E
share research interests
V
https://twitter.com 1434 V V V
https://twitter.com/E 714 V
https://twitter.com/u 12K V
https://twitter.com/ScienceGist V
https://twitter.com/3 764 V
https://twitter.com/r 43.6K V
https://twitter.com/r 51K V V
https://twitter.co 12.1K V
http://blog.drawscience.org/
limn.it
http://daily.jstor.org/
http://www.united-academics.org/
(V) researchblogging.org
https://www.elsevier.com/atlas
http://www.socialsciencespace.com/
https://www.hastac.org/
V https://www.growkudos.com/
sciworthy.com
http://www.usefulscience.org/
acawiki.org
https://medium.com/@STMDigest
http://www.publiscize.com/
http://www.sciencegist.com/
http://tss.nautil.us/
http://theconversation.com/uk
http://www.theopennotebook.com/
http://www.storycollider.org/
http://www.beforetheabstract.com
http://www.cheltenhamfestivals.com/about/famelab/
threeminutethesis.org/
http://openscienceworld.com/
http://realscientists.org/
https://www.silk.co
www.richannel.org
https://www.epernicus.com/network
http://www.academicroom.com/
http://www.methodspace.com/
http://www.scholarbridge.com/
/about/famelab/
Sciforum http://sciforum.net/ 2009 26
network)
AuthorAID http://www.authoraid.i 2007 26
network)
My Science Work https://www.myscienc 2010 26
network)
LabRoots http://www.labroots.c 2008 26
network)
Academia.edu https://www.academia 2008 26
network)
ResearchGate https://www.researchg 2008 26
network)
Profology www.profology.com 2012 26
network)
Biowebspin http://www.biowebspin 2013 26
network)
Research Connection https://researchconne 2014 26
network)
Piirus https://www.piirus.com 2014 26
network)
Humanities Commons http://hcommons.org/ 2016 26
network)
MLA Commons https://commons.mla.o 2012 26
network)
Crastina http://crastina.se/ 2013 26
network)
AcademiaNet http://www.academia-ne 2010 26
network)
ORCID http://orcid.org/ 2012 26
network)
INCEND http://www.incend.net/ 2014 26
network)
Vivo vivoweb.org 2004 26
network)
ResearcherID www.researcherid.co 2008 26
network)
SelectedWorks http://works.bepress. 2004 26
network)
Google Scholar Citations http://scholar.google.c 2012 26
network)
LOOP http://loop.frontiersin. 2014 researcher profiling (& social 26
Linkedin https://www.linkedin.c 2003 26
network)
OpenVivo http://openvivo.org/ 2016 26
network)
NowComment http://nowcomment.co 1999 comment 27
PubMed Commons http://www.ncbi.nlm. 2013 comment 27
PubPeer https://pubpeer.com/ 2012 comment 27
Reffit http://reffit.com/ 2014 comment 27
The Winnower https://thewinnower.c 2013 peer review (post-pub) 28
EGU Copernicus journals http://www.atmospheri 2001 peer review (post-pub) 28
Paper rejection Repository http://grigoriefflab.jan 2010 peer review (post-pub) 28
Discussion groups,
global network online conferences
that provides support, academic social network O/E
mentoring, resources and training for academic social network E
researcher
researcherssocial network based
in developing on
countries academic social network O
publications database
producer of educational virtual events and
academic social network O
webinars; members can also share
scholarly profiling and discussion academic social network O
scholarly profiling and discussion academic social network O
social network for academic staff and
academic social network E
administrators (not students)
social network for life sciences academic social network E
social network for researchers academic social network E
social network for researchers academic social network E
academic social network for humanities; academic social network, field
O/E
integration with CORE specific
academic social network, field
create groups and sites (MLA members) E/O
knowledge, skills, experience and opinion specific
academic social network? E
regarding
Academic scientific communication
social network for femaleand
academic social; network E
scientists
author identification tool researcher profile E
blogs, podcasts, tutorials, etc etc -
researcher profile O
aggregates content to communicate
linked data network (researcher profiling) researcher profile E
researcher profile researcher profile E
researcher profile researcher profile O
researcher profile based on GS records researcher profile E
researcher profiles/network built around researcher profile, academic
E
Frontiers and nature journals social network
researcher profile, social
Professional networking E
network
open instance of VIVO research network researcher profile O
Collaboratively comment on documents comment, also collaboratively O/E
commenting on PubMed papers by
platform for PPPR G
PubMed paper authors
post publication peer comments and
summmarize, platform for PPPR G
discussion on discuss,
PubMed praise,
papers criticize
papers and get your comments voted (in platform for PPPR G
multidisciplinary OA publishing platform
science & philosophy) journal with PPPR G
with open multistage peer review
open peer review for Copernicus journals journal with PPPR G
deposit paper rejection information paper rejection information G
https://twitter.com/ 1145 V? V? V
no account V
no account V
no account V
https://twitter.com/ 1.35M V
https://twitter.c 4377
no account
https://twitter.com 6005 V (also peer review)
no account V
http://sciforum.net/
http://www.authoraid.info/
https://www.mysciencework.com/
http://www.labroots.com/
https://www.academia.edu/
V https://www.researchgate.net
www.profology.com
http://www.biowebspin.com/
https://researchconnection.com/
https://www.piirus.com
V http://hcommons.org/
https://commons.mla.org/
http://crastina.se/
http://www.academia-net.org/project/
V http://orcid.org/
V? http://www.incend.net/
vivoweb.org
V www.researcherid.com
http://works.bepress.com/
V http://scholar.google.com/citations
http://loop.frontiersin.org/about
https://www.linkedin.com/
http://openvivo.org/
V http://nowcomment.com/
V http://www.ncbi.nlm.nih.gov/pubmedcommons/
V https://pubpeer.com/
V http://reffit.com/
V https://thewinnower.com/
V http://www.atmospheric-chemistry-and-physics.net/
V http://grigoriefflab.janelia.org/rejections
and-physics.net/
Peer Evaluation http://www.peerevaluat 2011 peer review (post-pub) 28
Epistemio https://www.epistemio 2013 peer review (post-pub) 28
Journal Lab (dead?) http://www.journallab.o 2012 peer review (post-pub) 28
Wiki Journal Club www.wikijournalclub.o 2012 peer review (post-pub) 28
Episciences http://www.episciences 2013 peer review (post-pub) 28
PaperHive https://paperhive.org/ 2014 28
reading)
measure impact (of output,
PLoS article level metrics http://alm.plos.org/ 2009 29
e.g. article)
PLoS ALM Reports http://almreports.plos. 2013 29
e.g. article)
Plum Analytics http://plumanalytics.c 2011 29
e.g. article)

ImpactStory https://impactstory.org 2012 29
e.g. article)

BookMetrix http://www.bookmetrix 2015 29
e.g. article)
PLoS DLM (Data-level metrics) dlm.plos.org 2014 29
e.g. article)
Altmetric http://www.altmetric.c 2011 29
e.g. article)
iCite https://icite.od.nih.gov 2015 29
e.g. article)
PLoS Rich Citations http://alpha.richcitatio 2014 29
e.g. article)
Depsy http://depsy.org/ 2015 29
e.g. article)
Bipublishers http://bipublishers.es/ 2014 29
e.g. article)
Harzing Publish or Perish (PoP) http://www.harzing.co 2006 29
e.g. article)
Scholarometer http://scholarometer.i 2009 29
e.g. article)
DOI Chronograph http://chronograph.lab 2015 29
e.g. article) (of
assessment
Open Contributorship Badges http://openresearchba 2014 30
researcher/research
assessment (of group)
Journal Impact Factor (JIF) in JChttp://thomsonreuters. 1964 30
researcher/research
Eigenfactor http://www.eigenfactor 2007 30
researcher/research
SciMago Journal Rank http://www.journalmetr 2010 30
researcher/research
SNIP (in JournalMetrics and Sco http://www.journalmetr 2010 30
researcher/research
NatureIndex http://www.natureinde 2014 30
researcher/research
R-index http://www.r-index.org 2014 30
researcher/research group)
Open repository for data, papers, media
coupled with an open review and platform for PPPR O
rate and review
discussion publications; organize &
platform
community of scientists who share open platform for PPPR G
export references
summaries and peer review of published platform for PPPR, journal club O/G
open,
article user-reviewed
(virtual journal summaries
club) of
platform for PPPR, journal club E/O
medical research articles
platform to host epi-journals (overlay- reviewing and virtual journals for
commenting platform for papers, currently G
journals) preprints
for content downloaded from arXiv, platform for PPPR G
suite
OAPEN of metrics for PLoS-articles
& Knowledge Unlatched (viewed, ALM O/G
cited, saved, discussed,
visualization of (aggregated) recommended)
PLoS ALM
ALM E
data
altmetrics altmetrics G
altmetrics altmetrics G
citations and altmetrics for books/book

altmetrics G
chapters
data-level metrics using PLoS ALM
altmetrics O/G
algorithm Lagotto
providing
dashboardalternative, article(including
of bibliometrics level metrics
RCR altmetrics G
-detailed
relativeinformation
citation ratio) for sets of
about the citingarticles article level metrics G
in PubMed
paper, the cited object and the citation context E
relationship between
impact of research the two
software measure software usage G
Bibliometric indicators for publishers publisher metrics E
citation analysis with Google Scholar data support for citation analysis E
Citation analysis, Google Scholar based,
support for citation analysis E
for assessment
collect information about DOI-referrals
display support for citation analysis O
from thebadges
open web for different author roles,
both w/ paper (on publisher site) and in badges for attribution G
ranking journals by average citations to
ORCID-profile. journal list, metrics, metadata E
'citable items'
network weighted citation counts &
journal metrics E
ranking
ranking for journals
journals (among weighted
by network others)
journal metrics E
citations
ranking journals by source normalised
Institutional ranking based onfor output journal metrics E
impact per paper (controlling subject)
presence in measure
quantitative 68 selected journals (but
of research also
integrity research analytics E
researcher profiles)
that can be used to evaluate the statistical research analytics G
replicability of a set of studies
no account V?
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https://twitter.com/a 18K
no account
no account V V
no account
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https://twitter.com 966 (V)
V http://www.peerevaluation.org/
V https://www.epistemio.com/
V http://www.journallab.org/
V? www.wikijournalclub.org
V http://www.episciences.org/
V https://paperhive.org/
V http://alm.plos.org/
V http://almreports.plos.org
V http://plumanalytics.com/
V https://impactstory.org/
V http://www.bookmetrix.com/
V dlm.plos.org
V http://www.altmetric.com/
V https://icite.od.nih.gov/
http://alpha.richcitations.org/
V http://depsy.org/
V http://bipublishers.es/
V http://www.harzing.com/pop.htm
V http://scholarometer.indiana.edu/
V http://chronograph.labs.crossref.org/
(V)? http://openresearchbadges.org/
V http://thomsonreuters.com/journal-citation-reports/
V http://www.eigenfactor.org/
V http://www.journalmetrics.com/
V http://www.journalmetrics.com/
V http://www.natureindex.com
V http://www.r-index.org/
citation-reports/
assessment (of
InCites http://researchanalyti 2009 30
researcher/research
SciVal https://www.elsevier.c 2009 30
researcher/research
Journal Scholar Metrics http://www.journal-sc 2016 30
researcher/research
ResearchFish http://www.researchfis 2011 30
researcher/research group)
Online data capture for every
Castor https://nl.castoredc.c 2011
medical researcher
Beat-eu.org https://www.beat-eu.or 2016
analyze / preproces /
Orange http://orange.biolab.si/ 2015 12
visualize
neXtA5 http://candy.hesge.ch/nextA5/ 2016 search
search (literature/ontologies)
(literature/SNOMED 3
SNOCat http://eagl.unige.ch/ 2011 CT) 3
EAGLi http://eagl.unige.ch/E 2016 Question Answering 3
Wemakeit ScienceBooster science.wemakeit.com 2017 fund / get contract 2
Journal Of Open-Source
http://joss.theoj.org/ 2016 archive/share code 16
Software
Writefull www.writefullapp.com 2014 write (+ code) 13
search (lit/data/patents/code)
AMiner https://aminer.org/ 2005 3
http://staging.manifoldapp.org 2017
tools for data collection and

IRIS http://www.iris-database.org 2012 analysis; data; search for
research methods
Typeset https://typeset.io/ 2015 write (+ code) 13
Resource Identification Initiative https://www.force11.org/group/resource-identification-initiative

Dimensions https://www.dimensions.ai/ 2018
Semantic Scholar https://www.semanticscholar.org/
2017?
research (group) assessment, expertise
research analytics E
profiling
research (group) assessment, expertise
research analytics E
profiling, funding
journal metrics info on Google Scholar
based
reporting outcomes for research impact journal metrics E
citation data - SS & AH
tracking for funders, researchers and research assessment E
researcher. Certified security for medical
research institutes
data. In 2011 there was no and
access to experimentation decent
testing in
visualization
computational science. You expert.
for novice and define what quick and easy explorative data
Interactive data analysis workflows with a E E
curation tool for biomedical literature. visualisation axis specific search engine /
large toolbox. And addon framework. gene name E E
Developped
SNOMED CTbymedical the BiTeM group.tool.
encoding annotation tool / webservices
navigation
Developpedand by knowledge extraction skills PMID
the BiTeM group.
Categorizer using SNOMED CT E E
(Gene Ontology, Swiss-Prot keywords, Formated queries Question Answering E E
crowdfunding
Protein-protein(booster chanel
interactions, for science
Medical crowdfunding platform E
projects)
software packages, to enable people who
feedback by using
create research big data
software to from Google research software publication
be credited
Books and Google
and mining servicesScholar. The second
for researcher social writing E E
helps researchers with
networks by creating semantic using academic
web profile E E
dialogue, Manifold transforms scholarly
of researchers,
publications integrating
into living data from
digital works
Free and searchable database
of materials, instruments,
Free and searchable database of analysis protocols, data for
materials,
Write instruments,your
and Auto-format analysis protocols, research into all aspects of
research E&G
and data
paper for research
to any into alloraspects
journal, thesis of language learning and
conference
language learning and teaching. Users
guidelines. teaching. Users can up and
can up and download research materials download research materials
Features:
-and data. verified Journal Templates
100,000+ and data.
- Cite while writing, works will all
reference management tools
- Live collaboration
- Instant reformatting to any journal online writing, also
Formats Research Papers G/E
guidelines collaboratively
- Export Formatted paper in pdf, docx,
LaTeX & XML
- No coding required
For transparency within biome
grants, publications, citations, clinical trials A new information product integrating several sources, with a business mo G Open
and patents
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and biomedicine. Nice visualization for author influence o Open
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no account
Y
https://twitter.com 248 Y
Y
Y
Y
https://twitter.com/writefullapp
576 V
Y? Y
y y y y y
https://twitter.com/TypesetIO 376 V V V
For transparency within biomedical literature

1000 April 2018 Search Discovery Archiving and
@DSDimensions Sharing
Search Discovery
V http://researchanalytics.thomsonreuters.com/incites/
V https://www.elsevier.com/solutions/scival
V http://www.journal-scholar-metrics.infoec3.es/layout.php?id=home
V http://www.researchfish.net/
https://nl.castoredc.com/
https://www.beat-eu.org/
Based on python. python code can be used insidehttp://orange.biolab.si/
Based on java/js, it also provides specific webservhttp://casimir.hesge.ch/nextA5
http://eagl.unige.ch/SNOCat/
http://eagl.unige.ch/EAGLi/
http://walacea.com/
www.writefullapp.com
https://aminer.org/
https://typeset.io/
ters.com/incites/
nfoec3.es/layout.php?id=home
gesisDataSearch http://datasearch.gesis.org/start
2018
Search for social and economic research
data across a diverse portfolio of data Nice sources, in development: "Dublin Core metadata from more than 30 da o Open
repositories and metadata services.
search Harvest data
#NAME?
This page has a very incomplete list of interoperable tools or tool combinations with specific interoperability issues. In the latter case, please specify the issue. Anyone is free to add tool
combinations. Date of announcement,
Specification of
Tool 1 Tool 2 Source report. If unknown date of Notes Checked?
interoperability issue
Overleaf iPython NB entry
Authorea iPython NB https://twitter.com/rd_pad/status/557178591918968832 20150119 http://jrsmith3.github.io/mi
Authorea GitHub https://twitter.com/andreazonca/status/557610619830939648 20150120 grating-a-latex-
presentation #futurepub 4
Overleaf (git-versioning) http://partiallyattended.com/2015/01/28/futurepub4-lens-next/
20150128 manuscript-hosted-on-
(https://www.youtube.com/
Overleaf GitHub https://twitter.com/digitalsci/status/561479286339956736 20150131 watch?v=ioL0zNOGRwI)
Overleaf FigShare https://twitter.com/digitalsci/status/561479286339956736 20150131
Overleaf Mendeley https://twitter.com/digitalsci/status/561479286339956736 20150131
Overleaf F1000Research https://twitter.com/digitalsci/status/561479286339956736 20150131
Overleaf PeerJ https://twitter.com/digitalsci/status/561479286339956736 20150131 Is this using the same
Wikipedia Altmetric http://www.altmetric.com/blog/new-source-alert-wikipedia 20150204 technology as CrossRef's
Winnower Overleaf https://thewinnower.com/posts/hello-overleaf 20150207 DOI Chronograph?
Plot.ly iPython NB http://blog.plot.ly/post/110830563382/eight-new-ideas-from-data-visualization-experts
20150212
Plot.ly Overleaf http://blog.plot.ly/post/110830563382/eight-new-ideas-from-data-visualization-experts
20150212
also confirmed for
WriteLaTeX Mendeley http://keitabando.org/2014/11/30/researchers-cloud-hacks/20141119
Overleaf (see other row)
WriteLaTeX Zotero http://keitabando.org/2014/11/30/researchers-cloud-hacks/20141119
WriteLaTeX CiteULike http://keitabando.org/2014/11/30/researchers-cloud-hacks/20141119
Mendeley ORCID http://m2id.org/top 20140507 No longer functional: 'Saying Goodbye: "Mendeley to ORCID" Coming to an End on March 31, 2016' via https://web.archive.org/web/20160303233008/http://m2id.org/top
ORCID SSRN https://blogbibhecparis.wordpress.com/2014/12/22/ssrn-integrates-orcid/
20141222
ORCID DataCite http://orcid.org/organizations/integrators/current yes
ORCID Zenodo http://orcid.org/organizations/integrators/current
ORCID PloS http://orcid.org/organizations/integrators/current
ORCID ScienceOpen http://orcid.org/organizations/integrators/current 1-way, more to come:
ORCID Dryad http://orcid.org/organizations/integrators/current http://wiki.datadryad.org/O
ORCID Figshare http://figshare.com/blog/figshare%20ORCID%20integration/86 RCID_Integration
Altmetric tracks Publons
Altmetric Publons http://www.altmetric.com/blog/a-tour-of-the-peer-reviews-tab/
20140409
and PubPeer
Altmetric tracks Publons
Altmetric PubPeer 20140409
http://www.altmetric.com/blog/a-tour-of-the-peer-reviews-tab/
and PubPeer
Altmetric DropBox 20150310 Daniël Lakens at #TUeOA
ImpactStory Figshare http://blog.impactstory.org/link-your-figshare-and-impactstory-accounts/
20131202
ImpactStory GitHub http://feedback.impactstory.org/knowledgebase/articles/368462-importing-products-from-figshare-orcid-github-p
ImpactStory Publons http://feedback.impactstory.org/knowledgebase/articles/368462-importing-products-from-figshare-orcid-github-p
ImpactStory Slideshare http://feedback.impactstory.org/knowledgebase/articles/368462-importing-products-from-figshare-orcid-github-p
to assign doi to GitHub
GitHub FigShare http://mozillascience.github.io/code-research-object/
GitHub rep.
to assign doi to GitHub
Zenodo https://guides.github.com/activities/citable-code/
rep.
Kudos ORCID http://exchanges.wiley.com/blog/2015/04/07/see-how-kudos-can-impact-citations-of-your-publications/
20150412
Rendering Notebooks on
iPythonNotebooGitHub https://blog.jupyter.org/2015/05/07/rendering-notebooks-on-github/
20150507
GitHub
OSF Galaxy https://cos.io/pr/2015-09-24/ to come
OSF JASP stats https://cos.io/pr/2015-09-24/ to come
OSF Zenodo https://cos.io/pr/2015-09-24/ to come
OSF Bitbucket https://cos.io/pr/2015-09-24/ to come
OSF Ubiquity https://cos.io/pr/2015-09-24/ to come
OSF OJS https://cos.io/pr/2015-09-24/ to come
OSF OneNote https://cos.io/pr/2015-09-24/ to come
OSF Evernote https://cos.io/pr/2015-09-24/ to come
OSF DMP tool https://cos.io/pr/2015-09-24/ to come
OSF Neurovault/Neurosynth https://cos.io/pr/2015-09-24/ to come
OSF VIVO/SHARE https://cos.io/pr/2015-09-24/ to come
OSF Dryad https://cos.io/pr/2015-09-24/ to come
OSF ShareLaTeX https://cos.io/pr/2015-09-24/ to come
OSF PsychoPy https://cos.io/pr/2015-09-24/ to come
OSF OpenSesame https://cos.io/pr/2015-09-24/ to come
Hypothes.is Wikipedia https://hypothes.is/blog/working-with-wikipedia-articles/ 20150925
Loop ORCID presentation Loop at 2AM:Altmetrics 20151008
Benchling DropBox https://twitter.com/benchling/status/675011001167708160 20151210
Benchling GoogleDrive https://twitter.com/benchling/status/675011001167708160 20151210
Mendeley Overleaf https://www.overleaf.com/blog/348-new-manage-shared-references-with-mendeley-groups
20160704
PaperHive Knowledge Unlatched http://www.knowledgeunlatched.org/2016/05/paperhive/ 20160517
PaperHive Kudos https://www.researchinformation.info/news/kudos-partners-paperhive
20160831
via add-on for Google
Google Docs Paperpile https://paperpile.com/blog/free-google-docs-add-on/ 20151112
Docs
ORCID Contributorship Open badges https://orcid.org/blog/2015/10/13/contributorship-open-badges-orcid
20151020
Mozfest 2016,
Open KnowledgZotero 20161030, to come
pers.comm.
Authorea eLife https://www.authorea.com/users/8850/articles/149449 20170117
dokieli Solid platform Any conforming Linked
dokieli Linked Data Platform Data Platform Linked
Any conforming
dokieli Linked Data Notifications implementation
Data Notifications
Annotation
implementation
dokieli Web Annotation
service/protocol
Any WebID+TLS; WebID
dokieli WebID Any conforming
eg ORCID, FOAF URIs
dokieli ActivityPub ActivityPubserver
implementation
Typeset Mendeley https://typeset.io/t/features/reference-citation/ Upload references xml
Typeset Zotero https://typeset.io/t/features/reference-citation/ Upload references xml
Typeset Endnote https://typeset.io/t/features/reference-citation/ Upload references xml
Typeset Paperpile https://typeset.io/t/features/reference-citation/ Upload references xml
Typeset Google Scholar https://typeset.io/t/features/reference-citation/ Paste bibtex code
OpenAIRE EDUGAIN 2014
OpenAIRE ORCID 2014
OpenAIRE Zenodo http://about.zenodo.org/policies/ 2009
OpenAIRE DSpace https://wiki.duraspace.org/pages/viewpage.action?pageId=33238567
2009
OpenAIRE ePrints https://www.openaire.eu/webinar-openaire-compatibility-for-repositories-eprints-repository-platform
2009
OpenAIRE EC Participant Portal (SYGMA) Example: http://cordis.europa.eu/project/rcn/99 2012
OpenAIRE Scopus (via DLI service aka Scholexplhttps://blog.scopus.com/posts/scopus-makes-strides-in-data-linking
2017
Tool Type/Description Link
Reproducibility checking http://rfactor.verumanalytics.io/

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NAME URL WEBLAUNCHYEAR PRIMEPHASEALPHA PRIMEPHASENUMBER

measure impact (of output,

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citations and altmetrics for books/book

tools for data collection and

Typeset https://typeset.io/ 2015 write (+ code) 13

Resource Identification Initiative https://www.force11.org/group/resource-identification-initiative

For transparency within biomedical literature

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