Fernando E. Ortega-Ojeda (fernando.ortega@uah.es) – www.Inquifor.

com
Puebla, 27 al 31 de Marzo de 2017
Fernando E. Ortega-Ojeda (fernando.ortega@uah.es), Puebla, 27 al 31 de Marzo de 2017. www.inquifor.com Lesson 4. Hyperspectral Imaging Systems. Basic concepts 2 Slide 2
 Hypercube Structure

3D

Fernando E. Ortega-Ojeda (fernando.ortega@uah.es), Puebla, 27 al 31 de Marzo de 2017. www.inquifor.com Lesson 4. Hyperspectral Imaging Systems. Basic concepts 2 Slide 3
 Hypercube Structure

3D

Fernando E. Ortega-Ojeda (fernando.ortega@uah.es), Puebla, 27 al 31 de Marzo de 2017. www.inquifor.com Lesson 4. Hyperspectral Imaging Systems. Basic concepts 2 Slide 4
 Hypercube Structure

3D 2D

Fernando E. Ortega-Ojeda (fernando.ortega@uah.es), Puebla, 27 al 31 de Marzo de 2017. www.inquifor.com Lesson 4. Hyperspectral Imaging Systems. Basic concepts 2 Slide 5
 Hypercube Structure

Fernando E. Ortega-Ojeda (fernando.ortega@uah.es), Puebla, 27 al 31 de Marzo de 2017. www.inquifor.com Lesson 4. Hyperspectral Imaging Systems. Basic concepts 2 Slide 6
 Hypercube Structure

D = T Pt + E

Fernando E. Ortega-Ojeda (fernando.ortega@uah.es), Puebla, 27 al 31 de Marzo de 2017. www.inquifor.com Lesson 4. Hyperspectral Imaging Systems. Basic concepts 2 Slide 7
 Unfolding the Data

Fernando E. Ortega-Ojeda (fernando.ortega@uah.es), Puebla, 27 al 31 de Marzo de 2017. www.inquifor.com Lesson 4. Hyperspectral Imaging Systems. Basic concepts 2 Slide 8
 Spectra vs. Concentration

Fernando E. Ortega-Ojeda (fernando.ortega@uah.es), Puebla, 27 al 31 de Marzo de 2017. www.inquifor.com Lesson 4. Hyperspectral Imaging Systems. Basic concepts 2 Slide 9
 Resolution of Pure Components. Constraints.

Fernando E. Ortega-Ojeda (fernando.ortega@uah.es), Puebla, 27 al 31 de Marzo de 2017. www.inquifor.com Lesson 4. Hyperspectral Imaging Systems. Basic concepts 2 Slide 10
 Unfolding the Data

D = T Pt + E

Fernando E. Ortega-Ojeda (fernando.ortega@uah.es), Puebla, 27 al 31 de Marzo de 2017. www.inquifor.com Lesson 4. Hyperspectral Imaging Systems. Basic concepts 2 Slide 11
 Background removal → Regions of Interest (ROI)

Fernando E. Ortega-Ojeda (fernando.ortega@uah.es), Puebla, 27 al 31 de Marzo de 2017. www.inquifor.com Lesson 4. Hyperspectral Imaging Systems. Basic concepts 2 Slide 12
 Background removal → Regions of Interest (ROI)

Fernando E. Ortega-Ojeda (fernando.ortega@uah.es), Puebla, 27 al 31 de Marzo de 2017. www.inquifor.com Lesson 4. Hyperspectral Imaging Systems. Basic concepts 2 Slide 13
 Dead-pixels or Dead-wavelengths

Fernando E. Ortega-Ojeda (fernando.ortega@uah.es), Puebla, 27 al 31 de Marzo de 2017. www.inquifor.com Lesson 4. Hyperspectral Imaging Systems. Basic concepts 2 Slide 14
 Dead-pixels or Dead-wavelengths

Fernando E. Ortega-Ojeda (fernando.ortega@uah.es), Puebla, 27 al 31 de Marzo de 2017. www.inquifor.com Lesson 4. Hyperspectral Imaging Systems. Basic concepts 2 Slide 15
 Dead-pixels or Dead-wavelengths

Fernando E. Ortega-Ojeda (fernando.ortega@uah.es), Puebla, 27 al 31 de Marzo de 2017. www.inquifor.com Lesson 4. Hyperspectral Imaging Systems. Basic concepts 2 Slide 16
 Savitzky-Golay Derivatives
Differencing may reduce the signal and increase the noise, thus
producing very noisy derivative spectra.

• S-G Derivatives are based on fitting a low degree polynomial function

(usually of quadratic or cubic degree) piece-wise to the data…
• Followed by calculating the first derivative and second derivative from the
resulting polynomial at points of interest.
Original
Window 5 points
Window 15 points

Fernando E. Ortega-Ojeda (fernando.ortega@uah.es), Puebla, 27 al 31 de Marzo de 2017. www.inquifor.com Lesson 4. Hyperspectral Imaging Systems. Basic concepts 2 Slide 17
Fernando E. Ortega-Ojeda (fernando.ortega@uah.es), Puebla, 27 al 31 de Marzo de 2017. www.inquifor.com Lesson 4. Hyperspectral Imaging Systems. Basic concepts 2 Slide 18
 Exploratory data analysis. Principal component analysis (PCA)

Fernando E. Ortega-Ojeda (fernando.ortega@uah.es), Puebla, 27 al 31 de Marzo de 2017. www.inquifor.com Lesson 4. Hyperspectral Imaging Systems. Basic concepts 2 Slide 19
 Exploratory data analysis. Principal component analysis (PCA)

Fernando E. Ortega-Ojeda (fernando.ortega@uah.es), Puebla, 27 al 31 de Marzo de 2017. www.inquifor.com Lesson 4. Hyperspectral Imaging Systems. Basic concepts 2 Slide 20
 Exploratory data analysis. Principal component analysis (PCA)

Fernando E. Ortega-Ojeda (fernando.ortega@uah.es), Puebla, 27 al 31 de Marzo de 2017. www.inquifor.com Lesson 4. Hyperspectral Imaging Systems. Basic concepts 2 Slide 21
 Segmentation-classification. Partial least squares-discriminant
analysis (PLS-DA)

Fernando E. Ortega-Ojeda (fernando.ortega@uah.es), Puebla, 27 al 31 de Marzo de 2017. www.inquifor.com Lesson 4. Hyperspectral Imaging Systems. Basic concepts 2 Slide 22
 Segmentation-classification. Partial least squares-discriminant
analysis (PLS-DA)

Fernando E. Ortega-Ojeda (fernando.ortega@uah.es), Puebla, 27 al 31 de Marzo de 2017. www.inquifor.com Lesson 4. Hyperspectral Imaging Systems. Basic concepts 2 Slide 23
 Regression/quantitation. Partial least squares regression (PLS)

Fernando E. Ortega-Ojeda (fernando.ortega@uah.es), Puebla, 27 al 31 de Marzo de 2017. www.inquifor.com Lesson 4. Hyperspectral Imaging Systems. Basic concepts 2 Slide 24
 Regression/quantitation. Partial least squares regression (PLS)

Fernando E. Ortega-Ojeda (fernando.ortega@uah.es), Puebla, 27 al 31 de Marzo de 2017. www.inquifor.com Lesson 4. Hyperspectral Imaging Systems. Basic concepts 2 Slide 25
 • IMEC: http://www2.imec.be/be_en/research/image-sensors-and-vision-systems/hyperspectral-
imaging.html
• HYPERTools: http://www.models.life.ku.dk/HYPERTools
• Pre-processing of hyperspectral images. Essential steps before image analysis. M. Vidal, J.M.
Amigo. Chemometrics and Intelligent Laboratory Systems 117 (2012) 138-148.
• Practical Issues of Hyperspectral Imaging Analysis of Solid Dosage Forms. José Manuel Amigo.
Analytical and Bioanalytical Chemistry. 398:1 (2010) 93-109.
• Golan Levin. ExperimentalCapture. Multispectral & Hyperspectral Imaging:
https://github.com/golanlevin/ExperimentalCapture/blob/master/docs/hyperspectral.md
• Detached Retina. C Face, hyperspectral converted to B&W:
https://www.flickr.com/photos/rshephorse/4279928945
• Resonon: http://www.resonon.com/Products/benchtop_system.html
• Multi- and Megavariate Data Analysis, Principles and Applications. 2nd Ed. 2006.
• The Uncrambler Help. Camo. Norway.
• THE REMOTE SENSING TUTORIAL:
http://www.ucl.ac.uk/EarthSci/people/lidunka/GEOL2014/Geophysics%2010%20-
Remote%20sensing/Remote%20Sensing%20Tutorial%20Overview.htm
• Hyperspectral imaging: https://en.wikipedia.org/wiki/Hyperspectral_imaging
• Photo.net: http://photo.net/beginner-photography-questions-forum/00cHTR

Fernando E. Ortega-Ojeda (fernando.ortega@uah.es), Puebla, 27 al 31 de Marzo de 2017. www.inquifor.com Lesson 4. Hyperspectral Imaging Systems. Basic concepts 2 Slide 26
Fernando E. Ortega-Ojeda (fernando.ortega@uah.es) – www.Inquifor.com
Puebla, 27 al 31 de Marzo de 2017