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MEETING REVIEW
The 7th ASM Conference on Biofilms was held in Chicago, Illinois, from 24 to 29 October 2015. The conference provided an in-
ternational forum for biofilm researchers across academic and industry platforms, and from different scientific disciplines, to
present and discuss new findings and ideas. The meeting covered a wide range of topics, spanning environmental sciences, ap-
plied biology, evolution, ecology, physiology, and molecular biology of the biofilm lifestyle. This report summarizes the presen-
tations with regard to emerging biofilm-related themes.
BIOFILM COMMUNITIES IN NATURE Citation Visick KL, Schembri MA, Yildiz F, Ghigo J-M. 2016. Biofilms 2015:
multidisciplinary approaches shed light into microbial life on surfaces. J Bacteriol
The conference was launched by the keynote lecture delivered by 198:2553–2563. doi:10.1128/JB.00156-16.
Dianne Newmann (California Institute of Technology, Pasadena, Editor: G. A. O’Toole, Geisel School of Medicine at Dartmouth
CA), who gave an overview of the complex biological and physico- Address correspondence to Karen L. Visick, kvisick@luc.edu, or Jean-Marc Ghigo,
chemical parameters that define different biofilm lifestyles. Dr. jean-marc.ghigo@pasteur.fr.
Newmann discussed the importance of using environmentally in- Copyright © 2016, American Society for Microbiology. All Rights Reserved.
formed reductionist approaches to study biofilms, using examples
response regulator LirA, possibly in combination with nutritional Together, the speakers in this session presented an impressively
sensing in different environments (11). Another mechanism in- diverse array of approaches to explore the complex factors and
volved in the fine-tuning of planktonic and biofilm lifestyles was signals involved in surface sensing and early attachment events.
presented by Alain Filloux (Imperial College London, London,
United Kingdom). The HptB pathway is part of the P. aeruginosa ASSEMBLY AND MODULATION OF THE BIOFILM MATRIX
GacA/Rsm lifestyle switch that controls biofilm growth. Here it The biofilm matrix is the glue that holds the cells together. Diverse
was shown that the HptB control of biofilm formation and motil- organisms have evolved a wealth of different strategies for adher-
ity can be rewired into an original c-di-GMP-dependent network ing to each other and to surfaces, including the production of
involving a newly identified diguanylate cyclase and effector pro- amyloid fibers, protein adhesins, and polysaccharides, as well as
tein. mechanisms for modulating biofilm matrix production or inter-
In her talk, Sonja Albers (University of Freiburg, Freiburg, actions in response to environmental signals such as oxygen or
Germany) presented how she used genetic, proteomic, and tran- calcium.
scriptomic approaches to study regulation of biofilm formation in For example, Matt Parsek (University of Washington, Seattle,
Archaea. She identified an archaeon-specific group of regulators, WA) presented new data on the composition of the PEL polysac-
the Lrs14 regulators, which are involved in major cell fate deci- charide, a component of the P. aeruginosa biofilm matrix. Dr.
sions (12). In the crenarchaeon Sulfolobus acidocaldarius, the Parsek showed that PEL matrix polymer is a cationic exopolysac-
Fungal biofilms, which are linked to many human infections, contributing to the current crisis in the availability of effective
were also represented in the meeting. The adherence of organisms antibiotics in the clinic. Understanding the mechanisms that per-
such as Candida albicans to implanted medical devices results in mit biofilm cells to resist or tolerate antibiotics and natural host
biofilms that withstand extraordinarily high antifungal concen- defenses and also understanding the corresponding response of
trations. Thus, there is a strong need to understand the physiology hosts to biofilm infections are therefore important areas of inves-
and molecular dynamics of fungal biofilms. Aaron Mitchell (Car- tigation. Not surprisingly, the development of novel treatments
negie Mellon University, Pittsburgh, PA) introduced us to fungal for infections, based on the properties of biofilms, was a promi-
biofilms formed by C. albicans. He described how Candida biofilm nent theme of the conference.
formation can result either from the positive regulation of glyco- Recently, it has become apparent that the ability of a subset of
sylphosphatidylinositol (GPI)-linked ALS1, ALS3, and HWP1 cells to become antibiotic-tolerant “persisters” is a key factor af-
(through regulators such as Bcr1) or from the inhibition of yeast fecting antibiotic effectiveness, and thus an active area of research
formation via a negative regulatory cascade that leads to filamen- lies in understanding the mechanisms involved in the production
tation and transition to the hyphal stage (19). David Andes (Uni- of persisters. Kim Lewis (Northeastern University, Boston, MA)
versity of Wisconsin—Madison, Madison, WI) described how covered a decade of work on persister biology and biofilm eradi-
Candida adherence to implanted medical devices can withstand cation, including a discussion on how a decrease in the level of
extraordinarily high antifungal concentrations. He showed that
the Candida biofilm matrix contains mannan-glucan structures
that are distinct from Candida cell wall glucans and can sequester
antifungal drugs, therefore contributing to multidrug resistance
(19).
In his keynote address, Yves Brun (Indiana University, Bloom-
ington, IN) brought together the topics addressed by the first four
sessions by discussing mechanisms of bacterial surface attachment
at the single-cell level (Fig. 3). Drawing from his work on Caulo-
bacter crescentus and other alphaproteobacteria producing hold-
fast adhesin structures, Dr. Brun discussed the notion of surface
sensing, the transition between reversible and irreversible attach-
ment, and the mechanical forces involved in holdfast-surface in-
teraction and in anchoring the holdfast to the cell envelope. These
results shed new light on holdfast biophysics and regulation and
revisited the role of flagella in surface mechano-sensing, while also
providing inspiration for the development of new biologically in- FIG 3 Automated image analysis of surface contact-stimulated holdfast syn-
spired materials with different adhesion properties (20). thesis in C. crescentus. Phase-contrast images of cells arriving on a glass surface
and fluorescence images of lectin staining of the holdfast were taken every 20
NEW INSIGHTS INTO ANTIMICROBIAL TOLERANCE AND min and were analyzed with MicrobeJ (http://www.indiana.edu/⬃microbej/)
NOVEL TARGETS AND STRATEGIES TO FIGHT BIOFILM (58, 65). MicrobeJ detects (green outline at t0) and tracks (pale blue) the cell
INFECTIONS pole and the holdfast (green hexagon at th). User-defined criteria automatically
record two temporal events, cell and holdfast detection, and these are used to
The remarkable properties of resistance of biofilms to antimicro- automatically compute the time delay between cell arrival on the surface and
bials and host defenses are well known and are likely one factor holdfast synthesis.
ATP, but not toxin-antitoxin (TA) systems, leads to persistence in inhibitors with broad spectrum activity. He elaborated on the mo-
S. aureus. Dr. Lewis then presented his recent work on the clinical lecular mode of action of 2-aminoimidazole-based biofilm inhib-
significance of persister enrichment in clinical isolates and the itors, their low potential for resistance development, and their
mechanistic basis of heritable, clinically relevant antibiotic toler- application in antibiofilm coatings for orthopedic implants (26).
ance (21). He concluded by presenting his recent work on the Targeting enzymes involved in production and degradation of
discovery of the new antibiotic teixobactin, a cell wall synthesis exopolysaccharides involved in matrix production may lead to
inhibitor with bactericidal activity against multiple pathogens, in- new biofilm control strategies. Jennifer L. Dale (University of
cluding S. aureus and Mycobacterium tuberculosis. Continuing the Minnesota, Minneapolis, MN) showed that the Enterococcus
theme of antibiotic tolerance, Olga Petrova (Binghamton Univer- faecalis glycosyltransferases (GTFs) EpaI and EpaOX are involved
sity, Binghamton, NY) presented results suggesting that P. aerugi- in synthesis of a cell wall-associated Epa polysaccharide. A defect
nosa biofilm formation and biofilm tolerance to antibiotics are in GTFs, and associated Epa synthesis, negatively impacts biofilm
regulated by distinct signaling cascades, both involving the tran- formation and leads to decreased structural integrity and suscep-
scriptional regulator FleQ and the sensor-regulator hybrid SagS, tibility to antibiotics and bile salts, suggesting that GTFs could be
but with discrete c-di-GMP requirements and protein interaction new targets for antimicrobial design. Lynne Howell (Hospital for
partners. Separating the factors involved in biofilm formation and Sick Children/University of Toronto, Toronto, Ontario, Canada)
biofilm tolerance will allow biofilm control strategies by targeting presented evidence that combinations of glycosyl hydrolases can
inflammation and production of anti-double-stranded DNA (an- cholerae, revealing the power of this approach in determining dif-
ti-dsDNA) as well as antichromatin antibodies, potentially con- ferences in matrix constituents (35). Florian Blauert (Karlsruher
tributing to the progression of autoimmunity (30). In his work, Institute of Technology [KIT], Karlsruhe, Germany) discussed
Steven Goodman (Nationwide Children’s Hospital, Columbus, how noninvasive optical coherence tomography (OCT) allows
OH) has found that targeting the DNABII family of proteins re- fast, quantitative, and in situ three-dimensional (3D) analysis of
quired for the maintenance of eDNA structure can prevent bio- biofilm deformation and how to access material properties of bio-
film formation by nontypeable Haemophilus influenzae, P. aerugi- films using OCT (36).
nosa, S. aureus, and Burkholderia cenocepacia. Dr. Goodman
proposed that eDNA-DNABII could be essential for EPS integrity BIOFILMS IN ENGINEERED SYSTEMS
in many bacteria and represents a universal target for biofilm pre- In engineered systems, biofilm formation could be beneficial, re-
vention. sulting in optimally functioning engineered bioreactors and
bioremediation of toxic compounds, or detrimental, causing bio-
EMERGING TECHNOLOGIES AND BIOFILM APPLICATIONS fouling and biocorrosion. Bruce Logan (Pennsylvania State Uni-
One of the highlights of the biofilm meeting was the impressive versity, University Park, PA) talked about hydrogen and biocata-
application of new and high-powered technologies to study bio- lyzed methane production from the cathode in biofilm-based
films and increase our understanding of different aspects of bio- bioelectrochemical systems. Dr. Logan discussed the functional
bial attachment on a wide variety of different substrates. Dr. How- Jena, Jena, Germany) discussed how B. subtilis populations pro-
ell discussed numerous potential applications of the technology, ducing costly matrix components as common goods can avoid
inspired by the slippery surface of the carnivorous pitcher plant, being out-competed by cheaters in spatially structured environ-
including the prevention of bacterial biofilm adhesion to cathe- ments of colony biofilms (46). Interestingly, cheaters are also ex-
ters, the mitigation of stable algal biofilm formation on glass sub- cluded from pellicles at the air-liquid interface, but they regain
strates, and the reduction of thrombosis in vivo (40). their biofilm incorporation ability after prolonged repeated coc-
These presentations collectively showed that better under- ultivation in the presence of the producer population. This illus-
standing of biofilm formation in industrial settings will allow im- trates how general adaption to certain growth conditions can
proved utilization and control of biofilms. benefit a cheater population at the expense of the cooperator pop-
ulation rather than by specific adjustment. Kasper Kragh (Univer-
EVOLUTION IN BIOFILMS AND THE IMPACT OF THE sity of Copenhagen, Copenhagen, Denmark) showed that the rel-
ENVIRONMENT ON BACTERIAL LIFESTYLES ative fitness of aggregates depends markedly on the density of
Jintao Liu (University of California, San Diego, La Jolla, CA) dis- surrounding single cells. When competition between aggregates
cussed cooperation and competition in B. subtilis biofilms: cells at and single cells is low, the aggregate is at a growth disadvantage
the biofilm periphery protect cells at the biofilm interior from because of reduced nutrient availability in the aggregate interior.
external attack but also starve them through nutrient consump- However, when there are many single cells on the surface and
ing biofilm development and in biofilms formed in the natural 6. Brooks JF, II, Gyllborg MC, Cronin DC, Quillin SJ, Mallama CA, Foxall
environment. Application of noninvasive imaging methods in liv- R, Whistler C, Goodman AL, Mandel MJ. 2014. Global discovery of
colonization determinants in the squid symbiont Vibrio fischeri. Proc
ing biofilms at high spatial and temporal resolution combined Natl Acad Sci U S A 111:17284 –17289. http://dx.doi.org/10.1073/pnas
with big data analysis is revealing fundamental principles of bio- .1415957111.
film formation. It was exciting to see translational work capitaliz- 7. Feirer N, Xu J, Allen KD, Koestler BJ, Bruger EL, Waters CM, White
ing on the advancement of our understanding of biofilm forma- RH, Fuqua C. 2015. A pterin-dependent signaling pathway regulates a
tion. The increasing focus on translational work was revealed dual-function diguanylate cyclase-phosphodiesterase controlling surface
attachment in Agrobacterium tumefaciens. mBio 6:e00156. http://dx.doi
through a plethora of examples, including the use of antibodies .org/10.1128/mBio.00156-15.
and engineered enzymes to target biofilm matrix components, 8. Mukherjee S, Bree AC, Liu J, Patrick JE, Chien P, Kearns DB. 2015.
novel biomaterials engineered to prevent adherence of biofilm Adaptor-mediated Lon proteolysis restricts Bacillus subtilis hyperflagella-
bacteria, and compounds designed to target major structures and tion. Proc Natl Acad Sci U S A 112:250 –255. http://dx.doi.org/10.1073
/pnas.1417419112.
regulatory circuits to control biofilm formation. Finally, the im-
9. Luo Y, Zhao K, Baker AE, Kuchma SL, Coggan KA, Wolfgang MC,
portance of understanding mechanisms of multispecies biofilm Wong GC, O’Toole GA. 2015. A hierarchical cascade of second messen-
formation, the diversity and functions of microbes in the commu- gers regulates Pseudomonas aeruginosa surface behaviors. mBio
nity in which they live, and the necessity for the development of 6:e02456-14. http://dx.doi.org/10.1128/mBio.02456-14.
techniques to answer these questions were highlighted. The objec- 10. Laventie BJ, Nesper J, Ahrne E, Glatter T, Schmidt A, Jenal U. 2015.
Capture compound mass spectrometry—a powerful tool to identify novel
SL, Hernandez D, Brackman G, Coenye T, Hancock RE. 2015. D- Alvarenga J, Aizenberg J. 2014. Self-replenishing vascularized fouling-
enantiomeric peptides that eradicate wild-type and multidrug-resistant release surfaces. ACS Appl Mater Interfaces 6:13299 –13307. http://dx.doi
biofilms and protect against lethal Pseudomonas aeruginosa infections. .org/10.1021/am503150y.
Chem Biol 22:196 –205. http://dx.doi.org/10.1016/j.chembiol.2015.01 41. Liu J, Prindle A, Humphries J, Gabalda-Sagarra M, Asally M, Lee DY,
.002. Ly S, Garcia-Ojalvo J, Suel GM. 2015. Metabolic co-dependence gives
24. Nguyen UT, Harvey H, Hogan AJ, Afonso AC, Wright GD, Burrows LL. rise to collective oscillations within biofilms. Nature 523:550 –554. http:
2014. Role of PBPD1 in stimulation of Listeria monocytogenes biofilm //dx.doi.org/10.1038/nature14660.
formation by subminimal inhibitory beta-lactam concentrations. Antimi- 42. Prindle A, Liu J, Asally M, Ly S, Garcia-Ojalvo J, Suel GM. 2015. Ion
crob Agents Chemother 58:6508 – 6517. http://dx.doi.org/10.1128/AAC channels enable electrical communication in bacterial communities. Na-
.03671-14. ture 527:59 – 63. http://dx.doi.org/10.1038/nature15709.
25. Pasquina L, Santa Maria JP, Jr, McKay Wood B, Moussa SH, Matano 43. O’Rourke D, FitzGerald CE, Traverse CC, Cooper VS. 2015. There and
LM, Santiago M, Martin SE, Lee W, Meredith TC, Walker S. 2016. A back again: consequences of biofilm specialization under selection for
synthetic lethal approach for compound and target identification in dispersal. Front Genet 6:18. http://dx.doi.org/10.3389/fgene.2015.00018.
Staphylococcus aureus. Nat Chem Biol 12:40 – 45. http://dx.doi.org/10 44. Ellis CN, Traverse CC, Mayo-Smith L, Buskirk SW, Cooper VS. 2015.
.1038/nchembio.1967. Character displacement and the evolution of niche complementarity in a
26. Steenackers H, Ermolat’ev D, Trang TT, Savalia B, Sharma UK, De model biofilm community. Evolution 69:283–293. http://dx.doi.org/10
Weerdt A, Shah A, Vanderleyden J, Van der Eycken EV. 2014. Micro- .1111/evo.12581.
wave-assisted one-pot synthesis and anti-biofilm activity of 2-amino-1H- 45. Koch G, Yepes A, Forstner KU, Wermser C, Stengel ST, Modamio J,
imidazole/triazole conjugates. Org Biomol Chem 12:3671–3678. http://dx Ohlsen K, Foster KR, Lopez D. 2014. Evolution of resistance to a last-
.doi.org/10.1039/c3ob42282h. resort antibiotic in Staphylococcus aureus via bacterial competition. Cell
scaffold biofilm matrices in response to environmental signals. PLoS Pat- Jacques M. 2016. Impact of Actinobacillus pleuropneumoniae biofilm mode
hog. 12:e1005711. http://dx.doi.org/10.1371/journal.ppat.1005711. of growth on the lipid A structures and stimulation of immune cells. In-
60. Allan RN, Morgan S, Brito-Mutunayagam S, Skipp P, Feelisch M, nate Immun 22:353–362. http://dx.doi.org/10.1177/1753425916649676.
Hayes SM, Hellier W, Clarke SC, Stoodley P, Burgess A, Ismail-Koch H, 63. Garcia EC, Perault AI, Marlatt SA, Cotter PA. 2016. Interbacterial
Salib RJ, Webb JS, Faust SN, Hall-Stoodley L. 2016. Low concentrations signaling via Burkholderia contact-dependent growth inhibition system
of nitric oxide modulate Streptococcus pneumoniae biofilm metabolism proteins. Proc Natl Acad Sci U S A 113:8296 – 8301. http://dx.doi.org/10
and antibiotic tolerance. Antimicrob Agents Chemother 60:2456 –2466. .1073/pnas.1606323113.
http://dx.doi.org/10.1128/AAC.02432-15. 64. Armbruster CR, Wolter DJ, Mishra M, Hayden HS, Radey MC, Mer-
61. Baker P, Hill PJ, Snarr BD, Alnabelseya N, Pestrak MJ, Lee MJ, rihew G, MacCoss MJ, Burns J, Wozniak DJ, Parsek MR, Hoffman LR.
Jennings LK, Tam J, Melnyk RA, Parsek MR, Sheppard DC, 2016. Staphylococcus aureus protein A mediates interspecies interactions at
Wozniak DJ, Howell PL. 2016. Exopolysaccharide biosynthetic gly- the cell surface of Pseudomonas aeruginosa. mBio 7(3):e00538-16. http:
coside hydrolases can be utilized to disrupt and prevent Pseudomonas //dx.doi.org/10.1128/mBio.00538-16.
aeruginosa biofilms. Sci Adv 2:e1501632. http://dx.doi.org/10.1126/sciadv 65. Ducret A, Quardokus EM, Brun YV. 2016. MicrobeJ, a tool for high
.1501632. throughput bacterial cell detection and quantitative analysis. Nat Micro-
62. Hathroubi S, Beaudry F, Provost C, Martelet L, Segura M, Gagnon CA, biol 1:16077. http://dx.doi.org/10.1038/nmicrobiol.2016.77.