Beruflich Dokumente
Kultur Dokumente
P-ISSN: 2349–8528
E-ISSN: 2321–4902
IJCS 2019; 7(3): 3282-3288 Isolation, characterization and screening of novel
© 2019 IJCS
Received: 15-03-2019 antibiotic producing bacteria from natural
Accepted: 20-04-2019
habitats of Western Himalayas and industrial
Yog Raj
1. Department of Microbiology
waste soil samples
Himachal Institute of Life
Sciences, Paonta Sahib,
Himachal Pradesh, India Yog Raj, V Singh and Arti Chauhan
2. Agrotechnology of Medicinal,
Aromatic and Commercially
Abstract
Important Plants Division,
Antibiotics, potential against multi-drug resistant (MDR) pathogenic bacteria is currently become a vital
CSIR-IHBT, Palampur,
Himachal Pradesh, India research area. The present research approach is focused on the isolation of antibiotic producing bacteria
from the soil samples collected from several diverse habitats viz. preserved areas of Himalayas, natural
V Singh water resources, rhizosphere of medicinal plants, agricultural soil, forest soils, industrial waste soil from
Department of Microbiology district Kullu and Poanta Sahib (HP). The bacterial isolates were characterized on the basis of their
Himachal Institute of Life morphology, further confirmed by biochemical and haemolytic activity tests. Antibiotic producing ability
Sciences, Paonta Sahib, of isolates was confirmed by zone of inhibition around bacterial colonies. A total of 30 isolates belonging
Himachal Pradesh, India to six different genera i.e. Micrococcus, Bacillus, Lactococcus, Pseudomonas, E.coli and Proteus,
antibiotic producing bacteria were found in different soil samples. Out of these, 12 potential antibiotic
Arti Chauhan producing strains showed their inhibitory response against pathogenic microorganisms. These results
Department of Microbiology suggested that after proper standardization and processing, soil isolates having antibiotic producing
Himachal Institute of Life capability can be used commercially.
Sciences, Paonta Sahib,
Himachal Pradesh, India
Keywords: Antibiotics, MDR, haemolytic activity, rhizosphere, zone of inhibition
Introduction
The word “antibiotic” is derived from Greek term antibiosis which means “against life”.
Antibiotics are medicine that kill or prevent the growth of bacteria, used to cure diseases. More
than 4000 antibiotics have been isolated, but only 50 have achieved wide usage while rest of
the other antibiotic compounds being toxic to humans and animals, high production costs
failed to attain commercial importance [1]. Antibiotics are natural drugs produced by several
fungi or bacteria unlike chemotherapeutic drugs which are manmade substances. Antibiotics
have long been considered the “magic bullet” that would end infectious disease.
Antimicrobial drugs are generally classified into two categories; one includes the synthetic
drugs, such as sulfonamides and quinolones, the second antibiotics synthesized by
microorganisms. Antibiotics, potential against multi-drug resistant (MDR) pathogenic bacteria
is currently become a vital research area. Natural bioresources having novel structures have
been observed to retain valuable biological activities. Producers of antibiotic can be found in
rivers, lakes, decaying plants and animal remains etc. but majority of microorganisms that
produce antibiotic inhabits soil. Many species of Bacillus are of considerable importance due
to antibiotic producing abilities [2]. Bacillus sp. produces diverse range of antibiotics such as
bacitracin and gramicidin which is produce by Bacillus licheniformis and Bacillus brevis
respectively. These antibiotics are active against many gram positive organisms such as
Stapylococci, Streptococci, anaerobic cocci, Cornyebacter and Clostridia but not against most
Correspondence
Yog Raj other gram negative bacteria [3]. Nowadays, much attention has been given to the increase in
1. Department of Microbiology antibiotic resistance as several microbial species and strains become resistant, many diseases
Himachal Institute of Life have become difficult to treat. Research in finding newer antibiotics and enhancing
Sciences, Paonta Sahib, productivity of such agents has become an essential action [4, 5]. The vast majority of novel
Himachal Pradesh, India
antibiotics have been detected by screening of “wild isolates” acquired from soil and other
2. Agrotechnology of Medicinal,
Aromatic and Commercially natural habitats.
Important Plants Division, The present study directed the isolation and screening of potential antibiotic producing bacteria
CSIR-IHBT, Palampur, from soil, optimization and characterisation of antibiotic producing strain, production of
Himachal Pradesh, India antibiotics by recovered strain, determining the prevalence of recovered isolates and to check
~ 3282 ~
International Journal of Chemical Studies
antimicrobial activity of recovered isolates against some light microscope under 100x oil emersion objective to observe
pathogenic bacteria viz. Pseudomonas (2488), Proteus (425), the colour, shape, size and arrangement of bacterial cells.
Streptococcus (655), Bacillus cereus (1305) and
Staphylococcus (96). Biochemical Characterization
The various biochemical tests viz., Indole, Methyle Red,
Material and Methods Voges Proskaur, Citrate utilization testes were carried out for
The present study was carried out in the Department of identification of isolates. Cappuccino Sherman’s Manual of
Microbiology, Himachal Institute of Life Sciences, Poanta Microbiology, 7th Ed [6].
Sahib (HP).
IMVIC Test
Collection of Soil Sample Indole Test
In systematic screening for isolation of antibiotic producing Bacterial colony was inoculated in 1% tryptophan broth in a
bacteria a total 22 soil samples were collected from several test tube. After incubation period of 48 h at 37 0C, one
diverse habitats viz.preserved areas of Himalayas, Natural millilitre (1ml) of chloroform was added to the broth. The test
water resources, rhizosphere of medicinal plants, agricultural tube was shaken gently, then 2.1 ml of Kovac’s reagent were
soil, forest soils,industrial waste soil from district Kullu and added and this was also shaken gently and allowed to stand
Poanta Sahib (HP). The samples were taken after removing for 20 min. The formation of red colouration at the top layer
approximately 3 cm of the soil surface, deep up to 20 cm as indicated positive and yellow colouration indicates negative.
most of the bacterial population is concentrated on upper
layer of the soil. Soil samples were collected with sterile Methyl Red
spatula in clean dry and sterile polythene bags, transferred to The isolates were inoculated in MR-VP medium and
the Department of Microbiology, HILS at Poanta Sahib and incubated at 37 0C for 24 h. Few drops of methyl red reagent
kept at 4 0C for further processing. were added after incubation of 24 h. The presence of red
colour indicated positive test.
Processing of Samples
Soil samples (50g each) were dissolved in 100 ml of sterile Voges Proskauer Test
distilled water to make soil suspensions and after that with the The isolates were inoculated in MR-VP medium and
help of Whatman filter paper obtained almost clear solution incubated at 370C for 24 h. After 24 h, 3 drops of 40% KOH
devoid of soil, stones and debris. Then filtrated solution was and 9 drops of alpha-naphthol reagent were added.
serially diluted to ten folds. Appearance of red colour showed positive test.
~ 3283 ~
International Journal of Chemical Studies
~ 3284 ~
International Journal of Chemical Studies
Table 2: Gram Staining Characterization of Recovered Isolates Table 4: Antimicrobial Activity of Isolates by Agar Well Diffusion
Method
Strain Colour and Morphology Type and Bacteria
APS-1 Pink and Micrococci Gram Negative Zone of inhibition in mm
APS-2 Blue and Micrococci Gram Positive Bacillus
Isolates Pseudomonas Proteus Streptococcus Staphylococcus
cereus
APS-3 Pink and Bacilli Gram Negative (2488) (425) (655) (96)
(1305)
APS-4 Blue and Micrococci Gram Positive APS-1 N.Z N.Z 16 18 N.Z
APS-5 Pink and Bacilli Gram Negative APS-2 N.Z N.Z 6 N.Z N.Z
APS-6 Pink and Bacilli Gram Negative APS-3 14 N.Z 21 12 20
APS-7 Blue and staphylococci Gram Positive APS-4 N.Z N.Z 17 12 10
APS-8 Blue and staphylococci Gram Positive APS-5 N.Z N.Z N.Z 8 8
APS-9 Blue and Micrococci Gram Positive APS-6 N.Z N.Z 12 9 22
APS-10 Blue and staphylococci Gram Positive APS-7 N.Z N.Z 17 10 N.Z
APS-8 N.Z N.Z 9 N.Z N.Z
APS-11 Blue and staphylococci Gram Positive
APS-9 20 N.Z N.Z 5 N.Z
APS-12 Blue and staphylococci Gram Positive APS-10 N.Z N.Z N.Z N.Z N.Z
APS-13 Pink and staphylococci Gram Negative APS-11 N.Z N.Z N.Z N.Z N.Z
APS-14 Blue and Bacilli Gram Positive APS-12 16 N.Z 14 N.Z 3
APS-15 Blue and staphylococci Gram Positive APS-13 N.Z N.Z N.Z N.Z N.Z
APS-16 Blue and Bacilli Gram Positive APS-14 N.Z N.Z N.Z N.Z N.Z
APS-17 Blue and staphylococci Gram Positive APS-15 29 N.Z 9 11 N.Z
APS-18 Blue and Micrococci Gram Positive APS-16 N.Z N.Z N.Z N.Z N.Z
APS-19 Blue and Micrococci Gram Positive APS-17 10 N.Z 10 15 3
APS-18 N.Z N.Z N.Z N.Z N.Z
APS-20 Pink and staphylococci Gram Negative
APS-19 N.Z N.Z N.Z N.Z N.Z
APS-21 Blue and Bacilli Gram Positive APS-20 N.Z N.Z N.Z N.Z N.Z
APS-22 Blue and Bacilli Gram Positive APS-21 N.Z N.Z N.Z N.Z N.Z
APS-23 Pink and Micrococci Gram Negative APS-22 N.Z N.Z N.Z N.Z N.Z
APS-24 Pink and staphylobacilli Gram Negative APS-23 N.Z N.Z N.Z N.Z N.Z
APS-25 Blue and staphylobacilli Gram Positive APS-24 N.Z N.Z N.Z N.Z N.Z
APS-26 Pink and Micrococci Gram Negative APS-25 N.Z N.Z N.Z N.Z N.Z
APS-27 Pink and staphylobacilli Gram Negative APS-26 N.Z N.Z N.Z N.Z N.Z
APS-27 N.Z N.Z N.Z N.Z N.Z
APS-28 Blue and Micrococci Gram Positive
APS-28 N.Z N.Z N.Z N.Z N.Z
APS-29 Pink and staphylobacilli Gram Negative APS-29 N.Z N.Z N.Z N.Z N.Z
APS-30 Pink and Bacilli Gram Negative APS-30 N.Z N.Z N.Z N.Z N.Z
N.Z-No Zone
Table 3: Biochemical Characterization of Isolates
Table 5: Antimicrobial Activity of Isolates by Disc Diffusion
Isolates Indole MR VP Citrate Utilization Probable identified Species
Method
APS-1 - + - + Micrococcus roseus
APS-2 - - - - Bacillus/ Micrococcus luteus Zone of inhibition in mm
APS-3 - + - - Lactococcus lactis Pseudomonas Proteus Streptococcus Bacillus cereus Staphylococcus
Isolates
APS-4 - - - - Bacillus/ Micrococcus luteus (2488) (425) (655) (1305) (96)
APS-1 N.Z N.Z 14 8 N.Z
APS-5 - + - - Lactococcus lactis
APS-2 N.Z N.Z 6 N.Z N.Z
APS-6 - + - + Micrococcus roseus APS-3 N.Z N.Z 15 N.Z 10
APS-7 - - - - Bacillus/ Micrococcus luteus APS-4 N.Z N.Z N.Z N.Z N.Z
APS-8 - + - - Bacillus/ Micrococcus luteus APS-5 N.Z N.Z N.Z 14 N.Z
APS-9 - - - - Bacillus/ Micrococcus luteus APS-6 N.Z N.Z N.Z N.Z 17
APS-10 - + - - Lactococcus lactis APS-7 N.Z N.Z 6 9 N.Z
APS-11 - - - - Bacillus/ Micrococcus luteus APS-8 N.Z N.Z 6 N.Z N.Z
APS-12 - + - + Micrococcus roseus APS-9 N.Z N.Z N.Z N.Z N.Z
APS-13 - - - + Pseudomonas aeruginosa APS-10 N.Z N.Z N.Z N.Z N.Z
APS-11 N.Z N.Z N.Z N.Z N.Z
APS-14 - - - + Pseudomonas aeruginosa
APS-12 10 N.Z 10 8 N.Z
APS-15 - - - - Bacillus/ Micrococcus luteus APS-13 N.Z N.Z N.Z N.Z N.Z
APS-16 + + - - E.coli/Proteus vulgaris APS-14 N.Z N.Z N.Z N.Z N.Z
APS-17 - + - - Lactococcus lactis APS-15 5 N.Z 8 N.Z N.Z
APS-18 - - - + Pseudomonas aeruginosa APS-16 N.Z N.Z N.Z N.Z N.Z
APS-19 - + - - Lactococcus lactis APS-17 12 N.Z N.Z N.Z N.Z
APS-20 - - - - Bacillus/ Micrococcus luteus APS-18 N.Z N.Z N.Z N.Z N.Z
APS-21 - - - - Bacillus/ Micrococcus luteus APS-19 N.Z N.Z N.Z N.Z N.Z
APS-20 N.Z N.Z N.Z N.Z N.Z
APS-22 - - - - Bacillus/ Micrococcus luteus
APS-21 N.Z N.Z N.Z N.Z N.Z
APS-23 - - - - Bacillus/ Micrococcus luteus APS-22 N.Z N.Z N.Z N.Z N.Z
APS-24 - + - + Micrococcus roseus APS-23 N.Z N.Z N.Z N.Z N.Z
APS-25 - + - - Lactococcus lactis APS-24 N.Z N.Z N.Z N.Z N.Z
APS-26 - + - - Lactococcus lactis APS-25 N.Z N.Z N.Z N.Z N.Z
APS-27 - - - - Bacillus/ Micrococcus luteus APS-26 N.Z N.Z N.Z N.Z N.Z
APS-28 - - - - Bacillus/ Micrococcus luteus APS-27 N.Z N.Z N.Z N.Z N.Z
APS-29 - - - - Bacillus/ Micrococcus luteus APS-28 N.Z N.Z N.Z N.Z N.Z
APS-30 - - - + Pseudomonas aeruginosa APS-29 N.Z N.Z N.Z N.Z N.Z
APS-30 N.Z N.Z N.Z N.Z N.Z
APS-Antibiotic producing strain
~ 3285 ~
International Journal of Chemical Studies
Fig 4a: Antibiotic producing strains (APS-3, 9, 12, 15, and 17) Fig 4c: Antibiotic producing strains (APS-1, 3, 4, 15, and 17)
showing zone of inhibition against pathogenic strain Pseudomonas showing zone of inhibition against pathogenic strain Bacillus cereus
(2488) (1305)
~ 3286 ~
International Journal of Chemical Studies
Fig 4d: Antibiotic producing strains (APS-3, 4,5, 6 and 12) showing
zone of inhibition against pathogenic strain Staphylococcus (96) Fig 4e: Control plate
Fig 4: Isolates showing antimicrobial activity againstpathogenic test organism in agar well diffusion method
Fig 5b: Antibiotic producing strains (APS-1, 3, 12) showing zone of Fig 5d: Antibiotic producing strains (APS- 12, 17) showing zone of
inhibition against pathogenic strain Streptococcus (655) inhibition against pathogenic strain Pseudomonas (2488)
Fig 5: Isolates showing antimicrobial activity against pathogenic test organism in disc diffusion method
~ 3287 ~
International Journal of Chemical Studies
References
1. Smith JE. Biotechnology. 3rd ed. Cambridge university
press, United Kingdom, 1996, 125-137.
2. Waites MJ, Morgan NL, Rockey JS, Higton M. Industrial
Microbiology an Introduction. Blackwell science Ltd,
London, 2008, 288.
3. Evoy Mc, G. Ahes drug information Amr. Soc. Hospital
Pharm. USA, 1993.
4. Sundaramoorthi C, Vengadesh PK, Gupta S, Karthick K,
Tamilselvi N. Production and characterization of
antibiotics from soil-isolated actinomycetes. Int. Res. J
Pharm. 2011; 2(4):114-118.
5. Retinowati W. Identification of Streptomyces sp-MWS1
producing antibacterial compounds. Indonesian J. Trop.
Infect. Dis. 2010; 1(2):82-85.
6. Cappuccino, James G, Natalie Sherman. Microbiology: a
laboratory manual. 1996, 115-118.
7. Yunus FN, Kanwal F, Rashid F, Ashraf A, Iqbal MN,
Xiao S. A Comparative Study on Isolation and
Identification of Bacillus thuringiensis from Different
Localities of Gujranwala City. PSM. Biol. Res. 2016;
1(1):34- 38.
8. Abdulkadir M, Waliyu S. Screening and Isolation of the
Soil Bacteria for Ability to Produce Antibiotics. Eur. J
Appl. Sci. 2012; 4(5):211-215.
9. Singh AP, Singh RK, Mishra S. Studies on Isolation and
Characterization of Antibiotic Producing Microorganisms
from Industrial Waste Soil Sample. Open Nutraceuticals
J. 2012; 5:169-173.
10. Holt JG, Krieg NR, Sneath PHA, Stately JT, Williams St.
Bergey’s Manual of Determinative Bacteriology. 9 th ed,
Baltimore, Williams and Wilkins. 1994, 787.
11. Al-Ajlani MM, Hasnain S. Bacteria Exhibiting
Antimicrobial Activities; Screening for Antibiotics and
the Associated Genetic Studies. Open Conf. Proc. J 2010;
1:230-238.
12. Prescott ML, Harley PJ, Klein AD. Microbiology. 7th ed.
Publishing Group, 2008, 42-51, 232-233, 762-764.
13. Kaur S, Kaur J, Pankaj P. Isolation and characterization
of antibiotic producing microorganisms from soil
samples of certain area of Punjab region of India. Int. J
Pharm. Clin. Res. 2014; 6(4):312-315.
~ 3288 ~