Beruflich Dokumente
Kultur Dokumente
Supervisor(s) Email
Pietra Dewi Hartrianti pietradewi.hartrianti@i3l.ac.id
Agnes Anania Triavika S. agnes.sahamastuti@i3l.ac.id
Safety Notice
Everyone working in i3L laboratories is potentially exposed to chemicals. Some of these chemicals
are potentially very harmful. Please review the “Code of Good Laboratory Practice” and the following
to ensure that all work can be conducted without significant risk.
● Do not embark on a new unfamiliar procedure until you have been fully trained.
● While working in i3L laboratories, laboratory coats must be worn and fastened at all times.
● Remove your laboratory coat and any other protective equipment, and wash your hands before
leaving the laboratory.
● Only authorized staff, students and visitors are allowed in the laboratories. Students are not allowed
in the laboratories except at scheduled class times without prior permission. Undergraduate work
must be supervised at all times by a member of academic staff.
Session 1
Aim Familiarize with laboratory facilities, understand the basic safety guidelines in the laboratory and
the basic of chemical safety
Overview
In this session, the students will be introduced to laboratory facilities in i3L. In general, this session
provides general rules in general chemistry laboratory together with the safety rules.
At the end of the presentation, the students will be given a tour to the laboratory.
Below are some important points of laboratory safety:
1. Lab Access
- Students do not have access to storage or chemical cabinet. Only lab personals have the access.
- Unauthorized visitors should not come to the lab, including other i3L students.
- Students are not allowed to take chemicals out of the cabinet. Please contact lab personals for
this
2. Lab coat
- Put the lab coat inside plastic bag after use
- Students must wear lab coat inside the laboratories, exception: Food Technology Lab
3. Proper attire in the laboratory
- Wear clothes that cover all exposed skin to protect from chemical spills, for example: covered
footwear and ankle-length pants
- Long hair must be tied to prevent it to get caught in lab machinery
- Rings, bracelets, and watches need to be removed for experiments that requires sterility and/or
if such materials may be contaminated by hazardous materials
- Only bring necessary items to minimize exposure of chemicals/microorganisms from the lab
4. Lab attitude
- No eating and drinking
- No smoking
- Do not work alone, there should be someone to help you in case something happens
- Wash hands with soap before exiting laboratory to clean any contamination
- Unruly behavior will not be tolerated in the laboratories (horseplay, pranks). No
running/excessive noise inside the lab premises
- No sitting on the floor/lab bench/mobile cabinets
- Turn off/keep the phone in silent mode. Electronic devices can only be used under the following
circumstances: dry lab session, taking pictures of samples, emergency calls. Protocols should
be printed and not accessed via electronic device. No social media, browsing, playing games
- No earphone. You should be able to hear everything that happen inside the lab
5. Personal Protection Equipment (PPE)
- Proper PPE inside the lab: lab coat + proper attire + gloves + safety glasses/goggles.
- Do not wear PPE (lab coats, gloves) outside the lab area (elevators, toilets, staircases).
- Wear gloves when instructed and remove gloves before the following actions: touching door
handles; pens; phones, and leaving the lab premises
- When using hazardous chemicals, use safety glasses
- Use fume hoods when using toxic volatile chemicals
- When diluting concentrated acids or bases: always add acid or base to water. Not the other
way around
- If you are splashed with huge amount of hazardous chemicals, immediately go to the nearest
safety shower. Pull the handle and the water will start spraying from the top. Locations of
showers: 308; in front of 305; teaching lab at level 6
- For chemical spills or eye irritations, use eye wash. In case of urgent need, wash the eye
immediately with copious amount of water from nearby sink
6. Bench organization
- Final condition should be the same with initial condition. Return things to their original place
(see lab layout)
- Throw away used consumables (see disposal guidelines)
- Put wet glass wares at drying rack
- Check integrity of glass wares/equipment. Report to lab instructors for any suspected faults
- Clean glass wares thoroughly. Always clean the flask after making agar (or agarose)
- Sterilize microbiological waste with bleach. Never autoclave bleached materials
7. Handling samples/aliquots
- Clean the weighing area with soaked tissue
- Never return used/excess chemical into the original container
8. Waste disposal
- Contaminated things must be thrown to the large biohazard bin
- Benchtop biohazard bin are only for disposing tips, tubes, etc (no gloves or tissue)
a) Chemical disposal
Throw chemical waste to the appropriate containers. There are different containers for different
types of chemicals, i.e organic solvents; heavy metals; dyes & stains; etc.
b) Sharps disposal
Benchtop bin: for needles (must be capped); microscope slides; cover slips; scalpels; small
glasswares
- Large yellow cardboard boxes: for broken glasswares
- Always report any incidents, including broken glasswares or equipment
9. Types of chemical hazard labels:
Session 2
Aim Demonstrate and report the accuracy and precision of different measuring device and able to apply
basic laboratory mathematics.
Overview
In this lab, you will be familiarized to some common measuring devices, learn how to use them to
obtain correct measurements, and to calculate right concentration of samples or reagents that will
determine the success of your laboratory experiments.
A. Laboratory Measurement
Note: Please study the commonly used laboratory equipment as depicted in appendix 1.
Recording your measurement
Students will record all the digits of the measurement using the markings that we know exactly and one
additional digit that we estimate and call uncertain. These digits are collectively referred to as significant
figures. Note, the electronic balance is designed to register these values and the student should only
record the value displayed.
Determining the accuracy and precision of your measuring device
All measuring equipment are subject to error, making it difficult to get exact measurements. The
question is how good one measuring device is. A way to describe it is by their accuracy and precision.
Figure 1 illustrates what is accuracy and precision.
Accuracy is a measure of how close your measured value is to the true value or other standard. The
quantitative measure of accuracy is called percent error. The lower the percent error is, the more
accurate the measuring device is.
Precision is a measure of how close repeated measurements are to each other. A high precision
measuring device will have low standard deviation. We want a good measuring device with a high
accuracy and high precision. Therefore, we will want a measuring device with small percent error and
small standard deviation. The standard deviation is defined as:
In which N is the number of measurement, xi is the value of each measurement and is the mean of
the measurement.
Example:
A cylinder standard has a known weight of 10.235 g. You weigh the cylinder using three measuring
devices (A, B, and C). You obtain the following data. Which device is the most precise and accurate?
Step 1. Find the mean value of from multiple trials using the same device. The mean value is obtained
by adding all value divided by the number of trial.
e.g. Mean value of weigh calculated using device A would be:
10.200+10.205+10.210
3
=10.2050 or 10.205 (based on significant figures)
Using the same formula, we calculate the mean from other measuring devices
10.2050 − 10.235
| | 𝑥100% = 0.293%
10.235
Note that when calculating % error, we used some extra significant figures from our calculation of the
mean. This is done to minimize rounding errors; errors that come from rounding and then using a
rounded number in the next calculation. Remember it’s always best to round only when you need to
report a number, as in a table. If you need to use a calculated number in another calculation, use the
unrounded number.
Using the same formula, we calculate the % error from other measuring devices
From the % error calculation, it can be concluded that device C is the most accurate.
From the calculation, we can see that device C is the most precise.
B. Laboratory Mathematics
Laboratory math is fundamental to any laboratory activities as laboratory math allows you to make the
right concentration of samples or reagents that will determine the success of your laboratory
experiments. Concentration is defined as the amount of substance that is present in a unit of solution or
mixture. Concentration can be expressed as different units, such as molarity (M), percent composition
(w/v, v/v, w/w), weight per volume (i.e. g/L , mg/mL), parts per million (ppm), and parts per billion
(ppb).
Note: Although mass is the more accurate term, the term weight is commonly used in its place. To avoid
confusion, we use the term weight throughout the protocol to be consistent with common convention
Molarity
Molarity (Molar Concentration) can be described as the number of moles of the solute present in 1 liter
of a solution. Hence the unit of molarity is mol/L or commonly written as M.
Example: To make 100 mL of 0.2 M solution of NaCl (Mw = 58.44), 1.1688 grams of NaCl must be
weighed and dissolved in 100 mL of water [m NaCl = 58.44 x 0.2 x 0.1 = 1.1688 g]
Note: Some chemicals come as a hydrate or salt forms (i.e. Copper Sulfate Pentahydrate, EDTA
Sodium Salt). Please check the total molecular weight of these forms and not use the molecular
weight of the pure form.
Volume/Volume (v/v)
Ratio of volume of a solute (in liquid) to the total volume of the solution, multiplied by 100.
Not all liquids have additives volume: when mixing miscible liquids (i.e. ethanol with water), the final
volume is not equal to the sum of the individual volumes. Therefore it is a good practice to dissolve the
solute with solvent and bring the total volume of the solution to the desired final volume.
Example: To make 70% ethanol, 70 mL of ethanol is diluted with water to a total volume of 100 mL.
Weight/Volume (w/v)
Ratio of the weight of solute to the total volume of the solution, multiplied by 100.
This percentage is commonly used in biological experiments, even though the units of the numerator
and denominator are different.
Example: To make 100 mL of 25% (w/v) solution of NaCl, weigh 25 grams of NaCl and add water up
to 100 mL.
It is also known as weight percent (symbolized as w.t.). Aqueous concentrated acids and bases are
normally expressed in % (w/w) (i.e Hydrochloric Acid 37%)
Example: To make 100 ml of 25% (w/w) solution of NaCl, weight 25 grams of NaCl and add 75 grams
of Water (as specific density of water is 1). [Caution: 100 mL doesn’t always correlate with 100 grams
if the solvent is not water].
If the solvent is water, w/v and w/w is almost identical*. However, w/v and w/w can’t be used
interchangeably if water is not used.
While it is important to write down the type of percentage, many protocols in the laboratory doesn’t
accurately state that information and it may lead to confusion. However, in many biological laboratories
if the solute is known to be in solid form, the % usually refers to % (w/v).
Example: 10% SDS usually refers to 10% (w/v).
*Density is correlated with temperature. Therefore, different temperature points may result in slightly
different weight measurement, although in many instances it can be omitted.
There are many times in which it is better to create a stock solution at a much higher concentration
compared to the actual working concentration.
For example, to create 100 mL of 2 mM solution of NaCl, 11.688 mg of NaCl must be weighed. This
small amount of solute may not be accurately weighed especially if there’s no appropriate analytical
balance. While the volume of the solution can be increased so that the mass of NaCl can be reasonably
weighed, a significant amount of the solution may need to be discarded and it is not feasible if the solute
itself is of limited quantity. Instead, a stock solution can be made (i.e. make 20 mM NaCl) and diluted
to the working stock with the same solvent if needed.
Such dilutions are commonly expressed as dilution factor, which is equal to the total volume of
working solution (V2) divided by volume of stock solution (V1).
Example: To dilute an ampicillin solution 1:200, 1 unit volume of ampicillin solution is mixed with 199
unit volume of the solvent (not 200 unit volume of the solvent)
Note: Simple dilutions as expressed by dilution factor should not be confused with mixing parts or
volume: Carnoy Solution (3:1 Acetic Acid: Ethanol Solution). In this case, usually the components of
each parts are specifically mentioned while in the dilutions it is assumed that the solvent makes up for
the remaining parts.
The dilution factor is also inversely related to the ‘strength’ of the stock solution (C1) compared to the
working solution (C2)
Example: 50x TAE buffer TAE refers the strength of the stock solution relative to the 1x working
concentration (1/50 Dilution Factor).
Since,
Simple (Parallel) Dilutions are usually calculated with the following equation:
𝐶1 𝑥 𝑉1 = 𝐶2 𝑥 𝑉2
Given that: V2 > V1 and C2 <C1.
Example: To measure how much 50X TAE stock is needed to make 500 mL of TAE buffer (1x),
10 mL of TAE (50X) is diluted by 490 mL of water, resulting in 500 mL of TAE Buffer (1X)
Note: Taking 1 mL aliquots of 10 mL 50X TAE stock doesn’t increase the concentration of the aliquots
into 10-fold. The concentration remains the same just as a drop of blood has a similar composition of
the whole blood (assuming perfect mixture).
While in theory, thousands-fold dilutions can be made using simple dilutions, it is highly inaccurate in
practice and a proper mixture may not be achieved. A multi-step dilution is preferable. One of the
commonly used multi-step dilution is called serial dilution and will be a topic of session 18.
AE Buffer consists of 50 mM Sodium Acetate (pH 5.2) and 10 mM EDTA (pH 8.0). How to make 100
mL of AE Buffer?
Option 1: Weigh each components individually from their solid forms
The molecular weight of Sodium Acetate and EDTA are 82.03 g/mol and 292.24 g/mol respectively.
To make 100 mL of AE Buffer, weigh 0.41015 grams of Sodium Acetate and 2.9224 grams of EDTA,
dissolve in water to a final volume of 100 mL.
Calculations: m NaOAc = 0.05 M x 0.1 L x 82.03 g/mol = 0.41015 g
m EDTA = 0.1 M x 0.1 L x 292.24 g/mol = 2.9224 g
Option 2: Make stock solutions and dilute from these stocks. From 0.1 M Sodium Acetate solution and
0.1 M EDTA solution: Take 50 mL of 0.1 M Sodium Acetate and 10 mL of 0.1 M EDTA, dilute with
water up to the final volume of 100 mL.
Calculations: 0.1 M x V1 NaOAc = 0.05 M x 100 mL V1 NaOAc = 50 mL
0.1 M x V1 EDTA = 0.01 M x 100 mL V1 EDTA = 10 mL
In practice, there might be a need to adjust the pH of each components and therefore making from
individual stock solutions (Option 2) is needed. In the example above, each component has a different
pH adjustment (pH 5.2 Sodium Acetate and pH 8.0 EDTA). Furthermore, a combination between
weighing from solid stock and using stock solution is also possible.
Note on solubility and pH – please do check the solubility of each chemicals (and the appropriate
solvent). Furthermore, some chemicals (i.e. EDTA) can only dissolve in basic pH (pH > 8).
Procedure
1. Investigating the accuracy and precision of laboratory glassware
You are given a beaker and two Erlenmeyer of different size. What can you say regarding the
accuracy and precision of the glassware when used to measure volume?
a. Take a 50-mL graduated cylinder and fill with water to the 50-mL mark. Transfer the water,
completely and without spilling, to a 50 mL graduated Erlenmeyer flask. Record the volume
on the Report Sheet (2) to the nearest 1 decimal place. Repeat the process three times. Make
sure the glassware is dried completely before each trial.
b. Repeat step (a) with 50 mL beaker instead of Erlenmeyer flask.
c. Repeat step (b) with 100 mL graduated Erlenmeyer flask.
d. Calculate the % difference in measurement between the 50 mL graduated Erlenmeyer flask or
50 mL beaker or 100 mL Erlenmeyer flask with the following formula:
volume a or b or c −50 ml
%difference = 50 ml
x100%
c. Using a glass ware listed in the table below, deliver 25 mL of water into the beaker. Weigh the
beaker again. Repeat the weighing process for three times. Record your results on the Report
Sheet.
Type of glassware
25 mL volumetric pipette
25 mL graduated pipette
25 mL graduated cylinder
3. Thermometer
Routine measurements of temperature are done with a thermometer. Thermometers found in
chemistry laboratories may use either mercury or a colored fluid as the liquid, and degrees Celsius
(℃) as the units of measurement. The fixed reference points on this scale are the freezing point of
water, 0 ℃, and the boiling point of water, 100 ℃. Between these two reference points, the scale is
divided into 100 units, with each unit equal to 1 ℃. Temperature can be estimated to 0.1 ℃. Other
thermometers use either the Fahrenheit (°F) or the Kelvin (K) temperature scale and use the same
reference points, that is, the freezing and boiling points of water.
a. Use the thermometer in your kit and record to the nearest 0.1⁰C the temperature of the
laboratory at room temperature by placing the thermometer for 1 minute on your desk. Use the
Report Sheet to record your results.
b. Record the temperature of boiling water. Set up a 250-mL beaker containing 100 mL water,
and heat on a hot plate until boiling. Hold the thermometer in the boiling water for at least 1
min. before reading the temperature (be sure not to touch the sides of the beaker). Using the
Report Sheet, record your results to the nearest 0.1⁰C. After measurement, put the thermometer
into a glass containing water at room temperature for about 3 minutes or until the reading is fix
before next measurement. Do triplicate (3 times) of measurement!
c. Record the temperature of ice water. Into a 250-mL beaker, add enough crushed ice to fill
halfway. Add distilled water to the level of the ice. Stir the ice water gently with a glass rod for
1 min before reading the thermometer. Hold the thermometer in the ice water for at least 1 min
before reading the temperature. Use caution; be careful not to touch the walls of the beaker with
the thermometer or to hit the thermometer with the glass rod. Read the thermometer to the
nearest 0.1⁰C. Record your results on the Report Sheet. After measurement, put the
thermometer into a glass containing water at room temperature for about 3 minutes or until the
reading is fix before next measurement. Do triplicate (3 times) of measurement!
4. Calculate the amount of the chemicals needed in the following questions (the real solution will be
made in session 3):
a. Make 10 mL of 3% (w/w) Sucrose Solution in water!
b. Calculate how much 37% (w/w) Hydrochloric Acid is needed to make 25 mL of 1 M
Hydrochloric Acid! Density: 1.2 g/ml; MW: 36.5 g/mol
c. Protein can be separated by SDS-PAGE method. Make 10 mL 1x working stock of SDS PAGE
Running Buffer! 10x SDS Page Running Buffer (1L) : 30 grams of Tris Base; 144 grams of
Glycine; 10 grams of SDS.
d. Plasmids (circular extrachromosomal DNA) can be extracted by alkaline lysis method. Usually
GTE solution is used. Make 25 mL of GTE Solution! GTE Solution: 50 mM Tris-Cl (pH 8.0),
50 mM glucose, and 10 mM EDTA
e. Alternatively, if chromosomal DNA is needed, it can be extracted by initially lysing the
bacterial cells with bacterial lysis buffer. Make 25 mL of Bacterial Lysis Buffer! Bacterial Lysis
Buffer: 50 mM Tris-Cl (pH 8.0), 0.5 % SDS, and 25 mM EDTA (ph 8.0)
Data observation
In your lab notebook, create several tables to record your observation. Be sure to label and title each
table so you can easily identify the information contained in each one.
Table 2. Choosing the appropriate measuring apparatus (1 table each for point b and c in procedure
part 2)
Table 3. Thermometer
Temperature (°C)
Trial Boiling
Room temperature Ice water
water
1
2
3
Data analysis
1. Investigating the accuracy and precision of laboratory glassware
a. Calculate mean and standard deviation of every observation
b. Calculate the percent difference in measurement between the flasks or beakers and the
graduated cylinder. The number used in the measurement is the mean value of each
measurement.
3. Thermometer
a. Calculate the mean and standard deviation of boiling water and ice water.
4 Laboratory math
Write down the full calculation steps for laboratory math problems!
Discussion
1. Using the % difference, what can you conclude about accuracy and precision of the beaker and
Erlenmeyer? In what case do you think it is appropriate to use the graduated mark on the
apparatus? What can you conclude about the effect of beaker size on the accuracy and precision
of the measurement?
2. When you want to obtain 10 mL and 25 mL of water using the above measuring apparatus as
indicated in the experiment, which measuring apparatus is the most suitable? Use the calculated
data as basis of your reasoning. You could also take into account the time needed to transfer
the indicated water volume.
3. Compare the temperature of boiling water and ice water recorded with the reference
temperature. If they are different, what cause the difference?
4. What is the difference between % w/w and % w/v? How to change molarity into weight?
References
1. Learning the basics – how to work with volumetric instruments. Brand GMBH. Retrieved from
www.brand.de.
2. Rules of significant figure http://tournas.rice.edu/website/documents/SignificantFigureRules1.pdf
3. How to use pipette bulb
https://www.youtube.com/watch?v=Jc7DVy3-TFc
https://www.homesciencetools.com/media/reference/CE-PIPFILL.pdf
4. The Volumetric pipet and pipetting technique
https://www.youtube.com/watch?v=HC44xjs7dho&t=4s
5. Chemistry – glass pipettes
https://www.youtube.com/watch?v=h2QZM6ZWvPs
6. Garcia, JI, et al. 2016. Experimental Organic Chemistry.
7. Jespersen, N.D., J. E. Brady, & A. Hyslop. 2012. Chemistry: The Molecular Nature of Matter 6th
Edition. Wiley Pub.: USA
Session 3
Aim Identify critical steps in using micropipette, solution preparation and simple dilution
Overview
Following last session (laboratory math), the students are going to perform solution preparation using
micropipette. In laboratories, the technique of preparing correct amount of concentration is one of the
most important skill aside from laboratory math. Solution preparation and dilution require accurate
measurement of the samples or reagents, the use of the right equipment along with the correct technique.
Micropipette is commonly used to transfer accurate amount of solutions (usually in microliters). Such
accuracy however, is highly dependent on the user as correct technique of pipetting is needed to produce
reproducible experiments. The main objective of this practical session is to practice accurate pipetting
technique along with the introduction of serial dilution method.
Based on the mechanism of action, there are two types of micropipette: air-displacement and positive
displacement. In majority of cases, air displacement is the type that is commonly used. Air-displacement
micropipette works like a syringe with an air cushion between the piston and the sample. When the
plunger / operating button is pressed to the 1st stop, the piston will expel the same volume of air as
indicated on the volume setting.
Air displacement micropipette comes in many volume capacities (from 0.2 µl to 10 mL) and is
commonly described by adding “P” to the number of the maximum volume of the micropipette (i.e. A
micropipette with the volume range of 200 – 1000 is commonly described as P1000). To aid the transfer
of the liquid, disposable plastic tips are attached to the bottom shaft of the micropipette. There are
different sizes of the tips and must be matched with the pipette volumes. (Note: NEVER use a
micropipette without the tip)
2) Fit the appropriate tip Gently press down the shaft with rotation motion (“Press and twist”). Do
NOT stab the tip (“jacking” the tip).
3) Depress the plunger into the 1st stop position.
4) As the pipette is held vertically (90o), immerse the tip slightly below the surface of the liquid
(around 2-4 mm).
5) Aspirate (draw) the liquid, by slowly release the plunger to the resting position. Wait for one second.
6) As the tip is positioned at an angle (10-45o) against the inside wall of the receiving container,
depress the plunger smoothly to the first stop position to dispense the liquid.
6) Wait for one second and then depress the plunger to the second stop to discharge the residual liquid.
This step is usually called “blow out” or purge.
7) While holding the plunger at the 2nd stop position, slowly remove the tip from the receiving
container by sliding it along the inner wall.
8) Release the plunger to the rest position.
NOTES
● Pre-wet the pipette tips (before step 5) 3-5 times to improve the accuracy of pipetting.
● At step 6 – the angle is created by shifting the container, while the micropipette should be held in
vertical manner.
● ALWAYS use a micropipette tip
● ALWAYS pipette in a slow, smooth action
● ALWAYS immerse the tip slightly below the surface, to prevent droplets buildup on the outer wall.
● ALWAYS discard the pipette tips when pipetting different samples/chemicals or different
concentrations of the same samples/chemicals.
● ALWAYS return the knob to the highest volume, to reduce tension of the spring.
● If possible, NEVER use the lowest capacity of the micropipette if different range of micropipette is
available (i.e. use P200 for 100 µl instead of P1000)
● NEVER hold the micropipette horizontally when the tip is connected to the micropipette (especially
if there’s liquid inside)
● NEVER move the plunger too fast to prevent chemicals moving into the micropipette shaft.
Serial Dilutions
If the target concentration is much smaller than the initial concentration, it is very hard to directly dilute
the solution without compromising the accuracy. Furthermore, if the initial volume of sample / reagents
are relatively small, it’s technically impossible to accurately transfer a very minute amount of solution
and expect a homogenized final solution. Therefore, the dilution process is usually carried out in a
stepwise manner.
A serial dilution is a step wise dilution series in which the concentration decreases by the same quantity
(same Dilution Factor) in each successive step. Dilution factor of 1/2, 1/5, and 1/10 are commonly used.
The main disadvantage of serial dilution is that an error in the initial steps will be carried over to the
subsequent dilutions and will result in a multiplicative error.
For a 0.01 mM glucose solution to be made from a 1 M stock, the initial stock can be diluted 5 times
with the dilution factor of 1/10: 1) 5 empty tubes are initially filled with 0.9 mL of water. 2) 0.1 mL of
the 1M solution is then added to the first tube, resulting in a 0.1 M solution (after careful mixing) 3)
With a new pipette tip, 0.1 mL of the 0.1 M solution is then added to the second tube, resulting in a 0.01
M solution. 4) Repeat the process until a final tube of 0.01 mM glucose solution is created.
Techniques
You have to read this before you come to the laboratory.
1. Prepare standard solution (Appendix 2)
2. Preparing sample for spectrophotometric measurement (Appendix 2)
Procedure
A. Micropipette Exercise
A1. Accuracy of Repetitive Pipetting 1
1) Transfer 6 mL of water using 1 mL micropipette into a 10 mL graduated cylinder.
2) Observe the amount of water in graduated cylinder and write down the difference between the
estimated result and the observed measurement.
B. Solution preparation
1. Make 10 mL of 3% (w/w) Sucrose Solution in water using 50 mL Beaker!
2. Prepare 25 mL of 1 M Hydrochloric Acid from 37% (w/w) Hydrochloric Acid! Please note that
37% HCl is very strong acid and is corrosive. Therefore, you have to do it inside fume hood and
cover your hands using gloves. Take 37% HCl using only glassware (do not dip plastic tips into
strong acid!). For dilution of strong acid, ALWAYS add acid into water! Put 80% of the amount of
water needed into volumetric flask, slowly add strong acid through the flask wall (do not carelessly
drop it directly into the solution). Let the solution cool down a bit, and add remaining water until
the volumetric marking.
3. Prepare 10 mL 1x working stock of SDS PAGE Running Buffer from 10x SDS Page Running
Buffer (1L) (30 grams of Tris Base; 144 grams of Glycine; 10 grams of SDS).
C. Serial Dilution
Using serial dilutions, design a standard curve covering 0.4 ppm until 4000 ppm of CuSO4.5H2O using
a 1 M CuSO4.5H2O solution in exponential manner.
1) Make a 6-points of standard curve (6 different concentrations) using microcentrifuge tubes. (1 tube
= maximum 1 mL). One of them should be the blank.
2) Transfer 150 µl of each concentration into a 96-well plate. Make a duplicate for each concentrations.
Data observation
A. Micropipette exercise
1. Compare the volume obtained by repetitive pipetting and find the % error (for the A1).
2. Is there any excess liquid observed in A2?
3. What are problems you face when you try to pipette viscous liquid?
B. Solution preparation
1. What is the actual weight of sucrose that you add?
2. What are problems you face when you try to dilute strong acid?
3. What is the actual weight of Tris base, glycine and SDS that you add?
C. Serial dilution
1. What are the concentrations of CuSO4.5H2O solution?
B. Solution preparation
What is the limit of % weighing error? Were the weighed materials within those limit? Why you need
to be careful when you dilute strong acid or base?
C. Serial dilution
What is the use of serial dilution? What its advantage and disadvantage?
Session 4
Aim Determine the oxidation number of an element and the name of an inorganic compound
Overview
A. Binary compounds
In this session, students will learn how to name binary compound of inorganic compound. Binary
compounds containing two elements are named directly from the elements involved. In naming a binary
salt the more metallic (more electropositive) element is named first. The second element of the
compounds is named with the suffix -ide added to it. For example: NaBr is sodium bromide; Al2O3 is
aluminum oxide. Some Two polyatomic anions such as OH– and CN–, have names ending in –ide
although those are not binary compounds. One polyatomic cation is named as a single species in the
naming of a compound; for example: NH4Cl is ammonium chloride, even though NH4Cl is not a binary
compound. For transition metal cations, they can exist in multiple oxidation numbers. Below are the
rules for naming in binary compound:
1. The -ous ending is usually used for the lower of two common oxidation numbers for the metal
cation, while the -ic ending shows the higher oxidation number.
2. Roman numeral is after English name to show the oxidation number of the metal cation in the
compound.
3. Below lists are metal cations which are used the old and new “stock “system. The metal ions with
the old system are highlighted.
4. The number of atoms of each element can be named with Greek prefixes. Below are the most
common Greek prefixes:
5. In the naming of binary compounds, the prefix system is preferred rather than the stock system.
6. Hydrates and inorganic salts are also used prefixes. For example, barium chloride is often labeled
as barium chloride dihydrate: BaCl2.2H2O, another example: The formula of iron(III) chloride
hexahydrate is FeCl3•6H2O.
7. An aqueous solution of a compound formed by hydrogen and electronegative nonmetal is called
binary acid. Below are the lists of acid nomenclature.
8. The sum of oxidation numbers of elements should be equals to zero, when writing formulas for
compounds.
Example of the formula for calcium nitride. Calcium has oxidation number of +2: Ca2+. The
nitrogen atom has –3 when combined with a metal: N3–. Therefore, for the sum of the oxidation
numbers to equal zero, there should be three Ca2+ (a total of +6) for every two N3– (a total of –6);
and the formula is Ca3N2.
B. Oxidation Number
Ions are charge molecules. They are either positive or negative charge. A negative charge ion is called
anion while positive charge ion is called cation. When one element combines with other element to
form a compound, the elements will have oxidation number (or oxidation state) instead of actual charge.
The following “rules” will only use the term oxidation number when considering the common charge
or “apparent” charge for an element. Note in rule 6 that polyatomic ions have an actual charge (not an
oxidation number).
1. Free State element (not combined with another element) has zero oxidation number. Ne, O2, P4 S8,
and C60 has an oxidation number of 0.
2. The oxidation number of monoatomic ions is equal to the charge of the ion. For example: Ca2+,
Fe3+, and Cl– have oxidation numbers of +2, +3, and –1, respectively.
3. Oxygen in compounds has oxidation number of –2 with the exception for a –1 in peroxides; e.g.,
H2O2, and +2 in OF2. In FeO, Fe2O3, KMnO4, and KIO3 oxygen has oxidation number of -2.
4. Hydrogen in compounds has oxidation number of +1 (except for –1 in metal hydrides; e.g., NaH).
In HCl, NaHCO3, and NH3, hydrogen has oxidation number or +1.
5. There are several elements have only one common oxidation number:
a. Group 1A elements have oxidation number of +1 in compounds.
b. Group 2A elements have oxidation number of +2 in compounds.
c. Boron and aluminum have oxidation number of +3 in compounds.
d. Binary compounds with metals, the nonmetallic elements of Group 6A typically has oxidation
number of –2.
e. binary compounds with metals, the elements of Group 7A have an oxidation number of –1.
6. The charge of polyatomic ions is equal to the sum of oxidation numbers of the polyatomic group’s
elements. Polyatomic ions have a charge equal to the sum of the oxidation numbers of the elements
of the polyatomic group.
7. In assigning oxidation numbers to elements in a compound, the element closest to fluorine (the
most electronegative element) in the periodic table is always assigned the negative oxidation
number. In the compound, P4O10, oxygen has the negative oxidation number of –2.
8. a. For compounds, the total oxidation number of all atoms in the compound should be equal to
zero. For example, Na2S compound, the sum of the oxidation numbers equals zero.
2 Na atoms, +1 for each (rule 5a) = +2
1 S atom, –2 for each (rule 5d) = –2
Sum of oxidation numbers (+2) + (–2) = 0
b. For polyatomic ions, the sum of the oxidation numbers of the elements must equal the charge
of the ion. For example, CO32– has the sum of the oxidation numbers of the elements equals a
charge of 2–.
3 O atoms, –2 for each (rule 3) = –6
1 C atom which must be +4= +4
so that (–6) + (+4) = 2–, the charge of the CO32- ion.
9. There are chemical elements which have more than one oxidation number such as FeCl2 and FeCl3.
Since the chlorine atom has an oxidation number of –1 when combined with a metal (rule 5e), the
oxidation numbers of iron are +2 in FeCl2 and +3 in FeCl3.
Procedure
A. Binary compounds
Given the formula of the compound, the proper names for a large number of compounds are to be
written. Given the name of the compound, the formulas for a large number of compounds also are to be
written. Your instructor will assign the exercises you are to complete. Answer them on a separate piece
of paper. Use the rules that have been described.
B. Oxidation number
Use the rule in the overview section to determine the oxidation number of an element in the below
compounds and ions. Your instructor will indicate the questions that you need to complete. In a separate
paper, answer the selected questions from your instructor.
References
1. Laboratory Manual for Principles of General Chemistry. 10 th Edition. J.A. Beran
Session 5
Aim Understand the principle of stoichiometry and calculate stoichiometry in chemical reaction
Overview
When atoms gain or lose electrons to yield ions, or combine with other atoms to form molecules, their
symbols are modified or combined to generate chemical formulas that appropriately represent these
species. Extending this symbolism to represent both the identities and the relative quantities of
substances undergoing a chemical (or physical) change involves writing and balancing a chemical
equation. The stoichiometric coefficients are the numbers used to make sure chemical equation is
balanced. Ratios can be calculated using the stoichiometric coefficients, and the ratios will inform the
relative proportions of the chemicals in the reaction. This ratio is usually called the mole ratio, the
stoichiometric factor or the stoichiometric ratio. The mole ratio can be used as a conversion factor
between different quantities.
Procedure
1. Mix sodium hydrogen carbonate with acetic acid for this experiment to generate carbonic acid
(H2CO3 which latter breaks up into water and carbon dioxide) and sodium acetate.
2. Write down the chemical reaction and balanced it. State the limiting reactant of this reaction.
3. If 10 ml of 0.125 M of NaHCO3 is used, measure how much acetic acid is needed to achieve 100 %
yield of reaction.
4. Add the acetic acid from the calculation into 10 ml of 0.125 M of NaHCO3 then vaporize the
solution until only sodium acetate is left using evaporating dish. Record the weight and calculate
the actual yield you obtained.
Data observation
1. Write down the calculation for acetic acid needed!
2. What is the weight of sodium acetate that you get, and what is the yield?
References
1. Jo Allan Berran. 2010. Laboratory Manual for Principles of General Chemistry, 9th edition.
2. Raymond Chang. 2013. General Chemistry: The Essential Concepts, 7th edition.
Session 6
Aim Understand factors that are involved in chemical equilibrium and Le Chatelier’s Principle
Overview
Two important questions are asked about every chemical reaction: (1) How much product is produced
and (2) How fast is it produced? The first question involves chemical equilibrium and the second
question belongs to the domain of chemical kinetics. The Law of Chemical Equilibrium is based on the
constancy of the equilibrium constant. This means that if one disturbs the equilibrium, for example, by
adding more reactant molecules, there will be an increase in the number of product molecules in order
to uphold the product/reactant ratio unchanged and thus preserve the numerical value of the equilibrium
constant. The Le Chatelier Principle states this as follows: If an outside stress is applied to a system in
equilibrium, the system reacts in such a way as to partly relieve the stress.
Procedure
1. Effect of reagent and concentration
a. Part 1
1) Place 20 drops (about 1 mL) of 0.1 M CuSO4 solution into a clean and dry test tube (Test
tube 1). Record the color.
2) Add (dropwise) 1 M NH3 solution, mixing the contents after each drop. Continue to add
until the color changes. Note the new color and the number of drops of 1 M ammonia
added and record it on your Report Sheet.
3) To the equilibrium mixture thus obtained, add dropwise, (counting the number of drops
added) 1 M HCl solution until the color changes back to pale blue. Report your
observations on your Report Sheet.
b. Part 2
1) Place 2 mL of 1 M K2HPO4 solution into a clean and dry test tube (Test tube 2). Use red
and blue litmus papers and test to see whether the solution is acidic or basic. Record your
findings on your Report Sheet.
2) Add a drop of 1 M HCl to new pieces of red and blue litmus papers. Record your
observation on the Report Sheet.
3) Add 1 drop of 1 M HCl solution to the test tube 2. Mix it and test it with red and blue litmus
papers. Record your observation on the Report Sheet.
c. Part 3
1) Prepare a stock solution by mixing 1 mL of 0.1 M iron(III) chloride, FeCl3, and 1 mL of
0.1 M potassium thiocyanate, KSCN, to a distilled water up to final volume of 50 mL in a
100-mL beaker.
2) Set up four clean and dry test tubes (test tube 3 - 6). To each test tube add about 2 mL of
the stock equilibrium mixture you just prepared. Test tube no. 3 will be used as the standard
to which you can compare the color of the other solutions.
3) To test tube no. 4, add 10 drops of 0.1 M FeCl3 solution; to test tube no. 5, add 10 drops of
0.1 M KSCN solution. To test tube no. 6, add 5 drops of saturated NaCl solution. Observe
the color in each test tube and record your observations on the Report Sheet.
2. Effect of temperature
a. Prepare a boiling-water bath by heating a 400-mL beaker containing about 200 mL water to a
boil.
b. Set up two clean and dry test tubes (no 7 & 8).
c. Place 1 mL of 0.1 M CoCl2 solution in test tube no. 7. Add 1M HCl dropwise until a color
change occurs. Record your observation on the Report Sheet. Note the molar concentration of
the acid.
Note: HCl is toxic and can cause skin burns. Wear gloves when dispensing. Do not allow skin
contact. If you do come into contact with the acid, immediately wash the exposed area with
plenty of water for at least 15 min. Do not inhale the HCl vapors.
d. Place 1 mL of 0.1 M CoCl2 CoCl2 solution in test tube no. 8. Immerse the test tube into the
boiling water bath. Add 1M HCl dropwise until a color change occurs. Record your observation
on the Report Sheet. Note the molar concentration of the acid.
Data Observation
Table 1 Effect of reagent and concentration
No Step Observation
1 Color of CuSO4 solution
2 Color after NH3 solution addition
3 Amount of NH3 added
4 Amount of 1 M HCl added
5 Color of blue litmus after addition of K2HPO4
6 Color of red litmus after addition of of K2HPO4
7 Color of blue litmus after addition of 1 M HCl
8 Color of red litmus after addition of 1 M HCl
9 Color of blue litmus after addition of 1 drop of 1 M HCl
10 Color of red litmus after addition of 1 drop of 1 M HCl
11 Color of tube 3
12 Color of tube 4
13 Color of tube 5
14 Color of tube 6
Data Analysis
1. Effect of reagent and concentration part 1
Calculate the moles amount of CuSO4 in 1 mL 0.1 M CuSO4 solution!
Calculate the theoretical amount of moles amount of NH3 solution needed to change color!
Calculate the actual amount of moles amount of NH3 solution needed to change color!
Calculate the theoretical moles amount of 1 M HCl needed for the color to change back to blue!
Calculate the actual moles amount of 1 M HCl needed for the color to change back to blue!
2. Effect of reagent and concentration part 2
Based on litmus test, report whether K2HPO4, 1 M HCl and the resulting mixture is acid or basic!
3. Effect of temperature
Calculate the amount of moles of 1 mL of 0.1 M CoCl2!
Calculate the theoretical moles amount of 1 M HCl needed to change color!
Calculate the actual moles amount of 1 M HCl needed to change color!
References
Bettelheim, F.A., Landesberg, J.M. 2009. Laboratory Experiments for Introduction to General,
Organic, and Biochemistry 7th Edition. Cengage learning
Session 8
Aim Measure acid – base content of a substance using universal pH indicator and pH meter
Overview
In our daily life, we encounter various acids and bases, from those of natural origin, such as fruits, to
commercial chemical products, for example household cleaning agent. Based on the BrØnsted-Lowry
theory, acids are compounds that can donate a proton (hydrogen ion), while bases are those that can
accept proton. In solution, the strength of an acid or base is measured in terms of pH. In this experiment,
pH of some solutions will be measured using pH indicator paper, as well as an instrument called pH
meter. pH measurement involving buffer solutions, which can resist pH change, will also be performed.
The objective of this experiment is to learn how to measure pH of solutions and to understand the mode
of actions of buffers.
Procedure
1. Transfer 5 mL of acetic acid, sodium acetate, citric acid, sodium citrate, HCl and NaOH (all at 0.1
M) into separated reaction tubes.
2. Dip a universal pH paper into those solutions. For each reading, use a new pH indicator paper
3. Compare the color of the paper to the color chart of the pH indicator box. Record your reading
4. Wash the pH meter electrode. Measure the pH of each solution using the pH meter.
5. Prepare 4 buffer systems in tall reaction tubes:
a. 5 mL 0.1 M acetic acid + 5 mL 0.1 M sodium acetate
b. 1 mL 0.1 M acetic acid + 10 mL 0.1 M sodium acetate
c. 5 mL 0.1 M citric acid + 5 mL 0.1 M sodium citrate
d. 1 mL 0.1 M citric acid + 10 mL 0.1 M sodium citrate
6. Measure the pH of each buffer solutions with pH meter.
7. Divide each of the 4 buffer solutions (a, b, c, d) into two halves (5 mL each) and place them in
clean reaction tubes.
a. To the first 5 mL of buffer (a), add 10 drops of 0.1 M HCl. Mix and then measure the pH using
pH paper & pH meter.
b. Repeat procedure 7a by replacing HCl with NaOH.
c. Repeat procedures 7a & 7b for the other 3 buffer solutions (b, c, d).
8. Place 5 mL distilled water in two reaction tubes. Measure the pH using pH meter. Repeat
procedure 7a & 7b for these 2 reaction tubes.
Data observation
Table 1 pH of different solution
Acetic Sodium Citric acid Sodium HCl NaOH
acid acetate citrate
pH
indicator
pH
meter
Data analysis
1. From your observation, determine which systems are acid, base or neutral
2. From the pH, calculate the concentration of hydrogen ion in each sample
Discussion
1. Discuss the merits of pH indicator and pH meter in measuring pH.
2. Discuss the discrepancies, if any, in the data measured by both methods
3. What patterns do you see in the data? What substance react in a similar manner?
4. What conclusion can be drawn about the effect of adding acid and base to the buffer system?
Prelab activities
1. Explain what is a buffer and how to prepare buffer generally
2. Explain what is pH
3. Explain why the pH of every 0.1 M acid is not 1
4. What is weak acid and strong acid?
5. What is Ka? Does this have any relationship to this session?
6. Predict what will happen to the pH of an acetic acid solution if a salt that did not contain acetate
ions were added.
7. Explain what determines the pH of a weak acid
8. What is a conjugate salt?
9. Find the MSDS for the chemicals used in this session. Which compounds are flammable, toxic by
inhalation, toxic by ingestion, or other routes of exposure? How do you handle them? How should
they be disposed?
References
1. Jespersen, N.D., J. E. Brady, & A. Hyslop. 2012. Chemistry: The Molecular Nature of Matter 6th
Edition. Wiley Pub.: USA
Session 9
Aim Standardize the concentration of sodium hydroxide solution and determine the concentration of
acetic acid in vinegar
Overview
A standard solution is a solution typically used in chemical analysis because the concentration is
precisely known. Standardization process is the determination of concentration of standard solution for
titration analysis.
In the standardization process, a primary standard is used to accurately determine the molarity of the
standard solution. The chemical used as a primary standard must be very pure, reasonably soluble,
stable, non-hygroscopic, and of fairly high molar mass. In this lab you will use KHP as a primary
standard. The KHP will be use to standardize NaOH solution. NaOH solution is considered a secondary
standard because NaOH is hygroscopic. Therefore, before it is used in titration or other experiments, it
should be standardized.
The standardization of NaOH with KHP in this session is using acid – base titration concept. In an acid-
base titration, an acid is added to a known quantity of base (or base is added to acid) until the moles of
protons donated by the acid equals the moles of hydroxide accepted by the base. This is called a
neutralization reaction and the point at which it happens is called equivalence point. Theoretically you
should stop titrating when the equivalence point is reached. However, the equivalence point is difficult
to observe, and the change around the equivalence point is steeped. Therefore, an indicator is used to
indicate the end point of the titration. The titration is stopped when there is a permanent change in the
indicator color. The titration should be slowed down as soon as the titration near the end point to prevent
the end point being too far from the equivalence point.
The neutralization process of KHP with NaOH is described in the following reaction:
NaOH (aq) + KHC8H4O4(aq) → KNaC8H4O4(aq) + H2O
It means to neutralize 1 mole of KHP, 1 moles of NaOH is needed. If we know the concentration of
KHP and the volume, and also the volume of NaOH , then, the concentration of NaOH could be
calculated using the following equation:
b. Ma. Va = a.Mb. Vb
where a = reaction coefficient of the acid, b = reaction coefficient of the base, Ma = molarity of the acid,
Mb = molarity of the base, Va = volume of the acid, and Vb = volume of the base.
Meanwhile, Acetic Acid is a weak acid commonly found in household vinegar. Household vinegar
contains 4-5 % by mass of acetic acid. To determine the percent mass of acetic acid in vinegar,
volumetric analysis technique could be employed. A certain amount of vinegar is titrated with
standardized NaOH solution to the vinegar solution which contains phenolphthalein indicator. The
determination of percent mass of acetic acid in vinegar can be calculated by using below equations:
Techniques
Watch the following videos carefully before you go to the lab:
1. Setting up and performing a titration
https://www.youtube.com/watch?v=sFpFCPTDv2w
2. Titration calculations
https://www.youtube.com/watch?v=2z4mlE6MK0U
3. How to use and clean a glass burette
https://www.youtube.com/watch?v=P1UWoU2ELZo
Procedure
A. Preparation of NaOH Solution
1. In a 150 mL beaker, prepare 100 mL of 0.1 M NaOH solution. Cover the beaker with plastic
wrap when the solution is not in used. Be careful when dissolving the NaOH as heat will rise
during dissolution process.
2. Vinegar Sample Preparation. Add the approximate calculated volume of one brand of vinegar
(obtained from prelab activities) to a clean dry Erlenmeyer flask with a previously measured
mass or a flask that has already been tared on the balance. Record the tared mass of the vinegar
sample. Add 2 drops of Phenolphthalein indicator and rinse the wall of the flask with 20 mL of
previously boiled, deionized water.
3. Burette preparation and Titration set-up. Rinse twice a clean 50 mL burette with 5 mL of the
standardized NaOH solution, making certain no drops cling to the inside wall. Fill the burette
with the standardized NaOH solution, eliminate all air bubbles in the burette tip, and after 10-
15 seconds, read and record the initial volume. Place a sheet of white paper beneath the flask
containing the vinegar sample.
Data Observation
1. Mass of KHP added: ____________ g
2. Mass of NaOH used to prepare NaOH solution: ___________g
3. Volume of NaOH added to 20.0 mL KHP solution
Tria Initial volume of NaOH Final volume of NaOH Volume of NaOH needed (mL)
l (mL) (2) (mL) (3) [(2) – (3)]
1
2
3
Data Analysis
1. From the mass of NaOH used and the volume of water added, calculate the theoretical molarity of
NaOH solution you prepared
2. From the mass of KHP used and the volume of water added, calculate the theoretical molarity of
KHP solution you prepared
3. From the volume of NaOH used to titrate KHP solution, calculate the actual molarity of NaOH
solution you prepared
4. Calculate the average molarity and standard deviation of NaOH from the titration
5. Calculate the % difference between average molarity of NaOH (number 4) and the theoretical
molarity of NaOH solution (number 1)
6. For each trial, calculate the volume of NaOH needed to neutralize the vinegar and KHP solution
7. Determine the actual molar concentration of NaOH solution using the data from the
standardization process
8. Using the actual molar concentration of NaOH solution, calculate the mole of acetic acid titrated,
the mass of the acetic acid, and % mass of acetic acid in the vinegar
9. Calculate the percent error of your calculation.
Discussion
1. What cause the difference between average molarity of NaOH and the theoretical molarity of
NaOH solution?
2. What are the challenged you faced during titration and how do you plan to improve the process?
3. What cause the error in your calculation? What could you do to reduce the error?
4. What is the merit of using the titration method with NaOH solution in determining the acetic acid
concentration? Discuss and compare one other method to determine the acetic acid concentration.
Prelab activities
1. Why is it important that the primary standard chemical be nonhygroscopic and pure? Why is it
important to dry the primary standard to a constant mass?
2. 20.00 ml of NaOH was titrated with a 0.600 M KHC8H4O4 solution. The data were graphed and
the equivalence point was found to be 15.50 ml when standard 0.600 M KHP solution was added.
The reaction equation is
NaOH (aq) + KHC8H4O4(aq) → KNaC8H4O4(aq) + H2O
a. What is the molar ratio of NaOH:KHC8H4O4?
b. What is the molarity of the NaOH solution?
3. Research and evaluate the hazards for all chemicals you will be using. Study the procedure
and look for other possible hazards that exist. List all hazards, including ones from chemicals.
What protective equipment will you need to use?
4. Find the molecular mass for KHP.
5. Calculate the mass of NaOH needed to prepare 100 mL 0.1 M NaOH
6. What is the use of phenolphthalein and why it is chosen in the protocol?
7. Explain how you should handle the burette and what should be done to the buret after the lab
session is done.
8. Investigate the % of acetic acid in the household vinegar claim by the manufacturer.
9. Calculate the volume of vinegar which needed to neutralized 20 mL of standardized NaOH
solution. Assume the vinegar has a density of 1 g/mL and a percent of acetic acid 5% by mass, and
the standardized NaOH solution is 0.1 M NaOH. Show the calculation on your report.
10. Find out what potassium hydrogen phthalate is, its molecular mass and its reaction with sodium
hydroxide. What is the role of KHP in this session?
11. Find the MSDS for acetic acid, NaOH and KHP. Which compounds are flammable, toxic by
inhalation, toxic by ingestion, or other routes of exposure? How do you handle them? How should
they be disposed?
References
Bettelheim, F.A., Landesberg, J.M. 2009. Laboratory Experiments for Introduction to General,
Organic, and Biochemistry 7th Edition. Cengage learning
Henrie, Sally A. 2015. Green Chemistry, Laboratory Manual for General Chemistry. CRC Press.
http://chemed.chem.purdue.edu/genchem/lab/equipment/buret/use.html
Session 10
Overview
Chromatography is a widely used experimental technique for the separation of a mixture of compounds
into its individual components. Two kinds of chromatographic techniques will be explored: column
chromatography and paper chromatography. In column chromatography, a mixture of components
dissolved in a solvent is poured over a column of solid adsorbent and is eluted with the same or a
different solvent. This is a solid–liquid system; the stationary phase (the adsorbent) is solid and the
mobile phase (the eluent) is liquid. In paper chromatography, the paper adsorbs water from the
atmosphere of the developing chromatogram. (The water is present in the air as vapor, and it may be
supplied as one component in the eluting solution.) The water is the stationary phase. The (other)
component of the eluting solvent is the mobile phase and carries with it the components of the mixture.
This is a liquid–liquid system.
Column chromatography is generally used for preparative purposes, when one deals with a relatively
large amount of the mixture, and the components need to be isolated in milligram or gram quantities.
Paper chromatography, on the other hand, is an analytical technique. Microgram or even picogram
quantities can be separated by this technique, and they can be characterized by their Rf value.
Example:
The objectives of this experiment are to compare separation of components of a mixture by two different
techniques and to demonstrate the effect of bromination on plant pigments of tomato juice.
CHEMICAL USED
Melting – point capillaries open at both ends
Glass wool
Procedure
A. Beta Carotene Separation Paper Chromatography
1. Obtain a sheet of what man no. 1 filter paper, cut to size, 10 x10 cm.
2. Plan the spotting of the samples as illustrated in Figure 2. Five spots will be applied. The first spot
will be (β) carotene solutions supplied by your instructor. The second, and third spots will have
your tomato paste extracts with one time spotting, the fourth is tomato paste extract with two times
spotting, and the fifth is tomato paste extract with three times spotting. Use a pencil to mark lightly
the spots according to Figure 2.
3. Pigments of tomato paste will be extracted in two steps.
a. Weigh about 10 g of tomato paste in a 50-mL beaker. Add 15 mL of 95% ethanol. Stir the
mixture vigorously with a stirring rod until the paste will not stick to the stirrer. Place a small
amount of glass wool (the size of a pea) in a small funnel, blocking the funnel exit. Place the
funnel into a 50-mL Erlenmeyer flask and pour the tomato paste–ethanol mixture into the
funnel. When the filtration is completed, squeeze the glass wool lightly with your spatula. In
this step, we removed the water from the tomato paste and the aqueous components are in the
filtrate, which we discard. The residue in the glass wool will be used to extract the pigments.
b. Place the residue and the glass wool in a 50-mL beaker. Add 10 mL petroleum ether and stir
the mixture for about 2 min. to extract the pigments. Filter the extract as before, through a new
funnel with glass wool blocking the exit, into a new and clean 50-mL beaker. Place the beaker
under the hood on a hot plate (or water bath). Evaporate the solvent to about 1 mL volume. Use
low heat and take care not to evaporate all the solvent. After evaporation cover the beaker with
aluminum foil.
4. Spotting
a. Place your chromatographic paper on a clean area (another filter paper) in order not to
contaminate it. Use separate capillaries, one for your tomato paste extract and one for the (β)
carotene solution. First apply your capillary to the extracted pigment by dipping it into the
solution as illustrated in Figure 3.
b. Apply the capillary lightly to the chromatographic paper by touching, sequentially; the spots
marked 2, and 3 Make sure, when touching the paper, that you make only small spots, not larger
than 2-mm diameter, by quickly withdrawing the capillary from the paper each time you touch
it. (See Figure 4.)
c. Make the fourth capillary and apply more extract on top of the spot at positions marked 4 once
the first spotting dried. While for spot at position marked 5 will have 3 times spotting (make
sure that you let the previous spotting dried before you apply more extract). Let them dry
(Figure 5)
d. Let all the spots dry. The unused extract in your beaker should be covered with aluminum foil.
Place it in your drawer in the dark to save it for the second part of this experiment.
b. Pour 20 mL of the eluting solvent (petroleum ether : toluene : acetone in 45 : 1 : 4 ratio, supplied
by your instructor) into a 600-mL beaker.
c. Place the stapled chromatogram into the 600-mL beaker, the spots being at the bottom near the
solvent surface but not covered by it. Cover the beaker with aluminum foil (Figure 7). Allow
the solvent front to migrate up to 0.5–1 cm below the edge of the paper. This may take from 15
min. to 1 hr. Make certain by frequent inspection that the solvent front does not run over the
edge of the paper.
d. Remove the chromatogram from the beaker when the solvent front reaches 0.5–1 cm from the
edge. You must remove the filter paper from the 600-mL beaker before the solvent front reaches
the edges of the paper. Mark the position of the solvent front with a pencil. Put the paper
standing on its edges under the hood and let it dry.
e. Remove the staples from the dried chromatogram. Mark the spots of the pigments by circling
with a pencil. Note
f. the colors of the spots. Measure the distance of the center of each spot from its origin. Calculate
the Rf values.
g. If the spots on the chromatogram are faded, we can visualize them by exposing the
chromatogram to iodine vapor. Place your chromatogram into a wide-mouth jar containing a
few iodine crystals. Cap the jar and warm it slightly on a hot plate to enhance the sublimation
of iodine. The iodine vapor will interact with the faded pigment spots and make them visible.
After a few minutes of exposure to iodine vapor, remove the chromatogram and mark the spots
immediately with a pencil. The spots will fade again with exposure to air. Measure the distance
of the center of the spots from the origin and calculate the Rf values.
Caution: If you use the iodine, heat in the hood. Iodine vapor is toxic. Do not breathe the vapor. Also,
do not touch the crystals; they will stain your fingers.
h. Record the results of the paper chromatography on the Report Sheet. (Is there more than one
spot visible for the tomato paste?)
Data Analysis
Calculate the Rf of beta carotene, spots developed from tomato paste and the marker
Discussion
1. Compare the Rf of beta carotene and the tomato paste. Do you think tomato paste contain beta
carotene?
2. What are other possible pigments or compounds that could give rise to the spots? Give some
references.
3. What compound makes up the marker?
Prelab Activities
1. Why do you have to make sure that the solvent front does not reach the edge of the paper?
2. Describe the active compounds in tomato that could give rise to color
3. Why could iodine vapor increase the visibility of the spots?
4. What factors should be considered to achieve good separation of compounds to be identified
using paper chromatography?
5. What happen if prior to the separation, you do not remove the other components using water and
ethanol?
6. What components from tomato are being extracted by water and ethanol?
7. Find the MSDS for acetone, petroleum ether, ethanol, and toluene. Which of the components are
flammable, toxic by inhalation, or toxic by absorption through the skin? How do you handle these
compounds? How should you dispose these compounds? What PPE are suitable in handling these
compounds?
References
Bettelheim, F.A., Landesberg, J.M. 2009. Laboratory Experiments for Introduction to General,
Organic, and Biochemistry 7th Edition. Cengage learning
Session 11
Aim Determine the density of solid and liquid
Overview
One of the property of material is density. Density measurement of different materials could be used
for many purpose. For example, density of wort during beer production determines how far the
fermentation process has gone. Density of cake determine firmness of the cake. Density depends on
temperature. The higher the temperature, the lower the density. For gas and liquid, the change in density
with regards to temperature can be very large. On the other hand, the change in density for solid in
general is negligible. That is why the measurement of density should be done in constant temperature
environment.
Density of Liquids
Density is a unique property of a substance. It can be calculated by dividing the mass (g) of a substance
to the volume of a substance (mL). The unit of density is typically in gram / milliliter (g/mL). The mass
of a substance is measured by weighing.
Specific Gravity
Specific Gravity of a liquid / substance is calculated by comparing the density of that liquid/substance
with the density of water which is 1.00 g/mL at 4o C.
Specific gravity has no units, since units are cancelled out in the equation.
Density of Solids
For solid matter, its density can be measured by displacement, in which solid is submerged in a known
amount of water. The difference of final volume substract to the initial volume of water is the volume
of water to the substance.
In this module, you are going to learn how to measure the density of liquid and solid. Several apparatus
such as pycnometer and hydrometer are introduced. In addition, you are going to learn how to determine
the density of powder or granule and solid object.
CHEMICAL
USED
water
Unknown liquid
Metal object
sand
Techniques
Measuring powder with balance: https://www.youtube.com/watch?v=dNeNBx8nAyQ
Procedure
1. Measuring density of unknown liquid with graduated cylinder and specific gravity with
hydrometer
a. Weigh a 50 mL graduated cylinder.
b. Place specific amount of liquid into the graduated cylinder (to be assigned by instructor).
Record the volume of liquid in the graduated cylinder with the correct number of significant
figures. Record also the weight of the water and the cylinder
c. Put a hydrometer in the cylinder. Record the specific gravity you read from the hydrometer.
d. Take out the hydrometer.
3. Density of sand
a. Weigh a pycnometer with its cap. Make sure the pycnometer is dry
b. Fill in the pycnometer up to 2/3 with sand and the close the pycnometer. Weigh the
pycnometer
c. Fill in the rest of pycnometer with water and close the pycnometer. Wipe any excess liquid
from the pycnometer. Make sure there is no bubble inside the pycnometer.
d. Weigh the pycnometer with its cap.
Data Observation
Record your observation in the following table
Part 1 Unknown
liquid
Weight of graduated cylinder (g)
Weight of cylinder and liquid
(g)
Volume of liquid (mL)
Specific gravity (hydrometer)
Part 2 Unknown
liquid
Weight of pycnometer (g)
Weight of pycnometer and liquid
(g)
Volume of pycnometer (mL)
Data Analysis
1. Density of unknown liquid with graduated cylinder
a. Determine the mass of the liquid by subtracting the mass of the cylinder from the mass of the
cylinder plus the liquid
b. Calculate the density of liquid sample by dividing its mass (g) by its volume (mL)
2. Density of water and unknown liquid with pycnometer
a. Calculate the density of liquid by dividing the mass of liquid with the volume of the
pycnometer
3. Calculate the specific gravity of unknown liquid by dividing the density obtained from point 1
and 2 above by the density of water at 293 K (obtained from literature)
4. Density of sand
a. From the density of water at the ambient temperature (obtained from the literature), calculate
the volume of water filling in the pycnometer
b. Calculate the volume occupied by the sand by deducting volume of pycnometer with the
volume of water occupying the pycnometer
c. Calculate the density of the sand by dividing the sand mass with the volume of the mass
Discussion
1. Report your finding in the following table
Density of liquid (g/mL) calculated from part 1
Density of liquid (g/mL) calculated from part 2
Density of sand (g/mL) calculated from part 3
Density of object (g/mL) calculated from part
4
2. Based on your finding, what is the liquid measured in the experiment? Explain your deduction?
Additional data regarding the other properties of the liquid might be given during the lab session.
3. Based on your finding, what is the metal measured in the experiment? Explain your deduction?
Prelab activities
1. Explain what is pycnometer and hydrometer. Describe their application in industry
2. What is specific gravity and when do you used specific gravity
3. Describe the requirement for measuring particle using pycnometer. Can density of all particle
measured using pycnometer?
References
Bettelheim, F.A., Landesberg, J.M. 2009. Laboratory Experiments for Introduction to General,
Organic, and Biochemistry 7th Edition. Cengage learning
Session 12
Overview
Any chemical or physical change includes a change in energy. Heat is a form of energy that can be
observed as a flow of energy. Heat can Travel spontaneously from an object at a high temperature to an
object at a lower temperature. Two objects in contact at different temperatures, given sufficient time,
will eventually reach the same temperature. The flow of heat energy can also be either into or out of a
system. The amount of heat can be measured in a device called a calorimeter. A calorimeter is a
container with insulated walls. The insulation prevents rapid heat exchange between the contents of the
calorimeter and the surroundings. In the closed environment of the system, there is no loss or gain of
heat. Because the change in temperature of the contents of the calorimeter is used to measure the
magnitude of the heat flow, a thermometer is included with the calorimeter. The specific heat of any
substance can be determined in a calorimeter which will be demonstrated in this lab
Specific gravity has no units, since units are cancelled out in the equation.
CHEMICAL USED
Water
Unknown metal
Styrofoam cups
Lid for Styrofoam cups
Metal stirring loop
Thermometers, 110 ℃ (2)
Latex rubber ring
Volumetric pipette 50 mL or
measuring cylinder/volumetric
flask
Thermometer clamp
Test tube (tall, 10 pcs)
Hot plate
Bunsen burner
100 mL beaker
Procedure
1. Determination of the Heat Capacity of the Calorimeter
Construct a calorimeter as shown in Figure 1. The two dry 8-oz. Styrofoam cups are inserted one
into the other, supported in a 250-mL beaker. The plastic lid should fit tightly on the cup. With a
suitable-sized cork borer, make two holes in the lid; one hole should be near the center for the
thermometer and one hole to the side for the stirring wire. In order to keep the thermometer bulb 2
cm above the bottom of the inner cup, fit a rubber ring (cut from latex rubber tubing) around the
thermometer and adjust the ring by moving it up or down the thermometer.
Because the density of water is approximately 1.00 g/mL over the temperature range for this
experiment, the amount of water used in all parts of the procedure will be measured by volume.
With a 50-mL volumetric pipet, place 50.0 mL of water in a clean, dry 150-mL beaker; determine
and record the mass (1). Slowly heat the water with a hot plate to a temperature of 70 ℃. While the
water is warming, you can do the following: with a 50-mL volumetric pipet, place 50.0 mL of cold
water in the calorimeter cup; determine and record the mass (2). Cover the cup with the lid
thermometer- stirrer assembly. Stir the water for 5 min., observing the temperature during the time;
record the temperature at 1-min. intervals on the Data Sheet (enter your temperatures using the
blanks in the left column). When the system is at equilibrium, record the temperature to the nearest
0.2℃. (3). When the water warming in the 150-mL beaker has reached about 70℃, remove the
beaker from the hot plate and allow the hot water to stand for a few minutes; stir the water
occasionally during this time period. Quickly record the temperature to the nearest 0.28 ℃. (4), and
pour the water completely into the calorimeter that has been assembled and has reached equilibrium
(Figure 1). Replace the cover assembly and stir the contents gently. Observe the temperature for 5
min. and record the temperature on the Data Sheet .every 30 sec. during that 5-min. period. Plot the
temperature as a function of time, as shown in Figure 2. (Use the graph paper on p. 113.) Determine
from your curve the maximum temperature by extrapolation and record it (5). Determine the ΔT (6
and 7). From the data, calculate the heat capacity of the calorimeter according to the calculations
on the Report Sheet.
Place the test tube in the water bath as shown in Figure 3. Be sure that all of the metal in the test
tube is below the surface of the water. Heat the water to a gentle boil and keep the test tube in the
bath for 10 min. Make certain that water does not splash into the test tube.
While the metal is heating, follow the temperature of the cold water in the calorimeter for 5 min.;
record the temperature on the Data Sheet (enter your temperatures using the blanks in the right
column) at 1-min. intervals. After 5 min., record the temperature on the Report Sheet of the cold
water to the nearest 0.2 ℃ (5). After 10 min. of heating the metal, observe and record the
temperature on the Report Sheet of the boiling water in the beaker to the nearest 0.2 ℃ (6). Obtain
and use another thermometer for the calorimeter. All steps must be done quickly and carefully at
this point. Remove the test tube from the boiling water; dry the outside glass with a paper towel;
remove the lid on the calorimeter; add the hot metal to the calorimeter. Be careful no water is added
to nor lost from the calorimeter on the transfer.
Record the calorimeter temperature on the Data Sheet as soon as the apparatus has been
reassembled. Note the time when the temperature is determined. Stir the water. Continue to follow
the temperature, recording the temperature on the Data Sheet every 30 sec. for the next 5 min. Plot
the temperature as a function of time, as shown in Figure 2. Determine from your curve the
maximum temperature; record the temperature on the Report Sheet (7). Determine the ΔT (8). From
the data, determine the specific heat and the atomic mass of the metal. (Use the graph paper)
Data Observation
Record your observation in the following sheet
7. ΔT of warm water
(5) – (4) ______________℃
Cold water
Time (min.) Temp (℃) Time (min.) Temp (°C)
0 ______________ 0 ______________
After mixing
Data Analysis
2. Density of unknown liquid with graduated cylinder
a. Determine the mass of the liquid by subtracting the mass of the cylinder from the mass of the
cylinder plus the liquid
d. Calculate the density of liquid sample by dividing its mass (g) by its volume (mL)
5. Density of water and unknown liquid with pycnometer
a. Calculate the density of liquid by dividing the mass of liquid with the volume of the
pycnometer
6. Calculate the specific gravity of unknown liquid by dividing the density obtained from point 1
and 2 above by the density of water at 293 K (obtained from literature)
7. Density of sand
a. From the density of water at the ambient temperature (obtained from the literature), calculate
the volume of water filling in the pycnometer
b. Calculate the volume occupied by the sand by deducting volume of pycnometer with the
volume of water occupying the pycnometer
c. Calculate the density of the sand by dividing the sand mass with the volume of the mass
Pre-Lab Questions
Discussion
1. In doing this experiment, a student did not follow the directions exactly. How would the
experiment be affected if the following were done?
a. Glass beakers were used to make the calorimeter instead of Styrofoam cups.
b. Not all of the water was delivered from the 50-mL volumetric pipet to the calorimeter.
c. No plot of temperature was carried out. Instead, the student used the value of the water just
after mixing with the metal as the maximum temperature.
2. A 102.5-g sample of metal beads was heated in a water bath to 99.58C. The metal was then added
to a sample of water (25.7 g) and the temperature of the water changed from an initial temperature
of 20.0℃ to a final temperature of 41.5℃.
3. Calculate the amount of heat (in calories) absorbed when 50.0 g of water at 20 ℃ spreads over
your skin and warms to body temperature, 37℃
a. What was the temperature of the metal at equilibrium?
b. What was the temperature change of the metal?
c. Calculate the specific heat and the atomic mass of the metal. What is the metal?
References
Bettelheim, F.A., Landesberg, J.M. 2009. Laboratory Experiments for Introduction to General,
Organic, and Biochemistry 7th Edition. Cengage learning
Session 13
Overview
The physical properties of a substance can be observed through its physical appearance, for example
calcium carbonate, is white, dull and powdery. The Physical properties of a compound such as its
solubility, boiling point, melting point and density can be observed and analyzed with laboratory set up.
1 The boiling point of pure water is 100 oC at standard atmospheric pressure, 1 atm or 760 mmhg.
Boiling point is also depend on the pressure for example: on the Mount Everest (28028 feet above the
sea), the atmospheric pressure is lower than at lower ground therefore temperature below 100 oC can
boil water. Another physical property is density. The density has a unit of mass per volume (g/mL). the
calculation for density can be performed by obtaining mass from analytical balance and volume from
several sources such as graduated cylinder, pipet or even by water displacement method.
Materials
NaCl
Na2C2O4
Metal Cylinders,
CaCl2
Equipment
250 mL Erlenmeyer Flasks
Stirring Rods
Ring Stand
Thermometer
Thermometer Clamp
Wire Screen
Hot Plate
Laboratory Balance
Rulers
Graduated Cylinder
Procedure
1. Solubility of ionic compounds: Determine and compare the solubilities of sodium chloride,
NaCl, and sodium oxalate, Na2C2O4, in water.
a. Obtain two 125 mL Erlenmeyer flasks. To each, add 50 mL of DI water, using a graduted
cylinder for the volume measurement.
b. Begin determining the solubility limit of NaCl by measuring out 15 g of NaCl on a balance.
Record the exact amount on your data sheet. Mix the solid into one of the flasks, stirring until
the NaCl crystals dissolve and are no longer visible. Return to the balance and measure out an
additional 0.5 g of NaCl. Record the exact amount. Add this to the solution and stir until it
dissolves. Continue this procedure of adding 0.5 g each time until the added amount no longer
goes into solution. Keep careful track on the data sheet as to how much NaCl is added
c. Follow the step b procedure with Na2C2O4, except begin by measuring 1.0 g of Na2C2O4
(record exact amount); stir the solid into the second flask of water until it completely dissolves.
Continue the adding process described above, but measure out an additional 0.20 g each time.
Be sure to record the exact amount of compound added. Compare this final result to the data
from the NaCl. Save these flasks for the next part of the experiment.
Reference:
Exploring Chemistry: laboratory experiments in general, organic and biological chemistry. 2nd edition.
Julie R. Peller
A graduated cylinder is a cylinder marked with different scale increments. It comes in many
different size and different scale increments. Before you begin to measure, you need to first determine
the scale increment. To do this, subtract the values of any two adjacent labeled graduations and divide
by the number of intervals between them.
Source : Learning the basics – how to work with volumetric instruments. Brand GMBH. Retrieved
from www.brand.de.
These pipettes require a controlled delivery of Partial measurements using the last few
the solution between the upper fill mark and milliliters of the pipette in or near the
the intended lower mark. The mark between delivery tip are inaccurate (and thus
the last graduated line and the tip are not discouraged) due to changes in the
calibrated. Therefore, should not be used for diameter of the pipette. The opening in
measurement. the tip is large, allowing liquid to flow
faster.