Beruflich Dokumente
Kultur Dokumente
________________________________
Researcher
Bernadette Hipolito
Research Adviser
Bioactivity profiling of naturally occurring Philippine strain
In the development of drugs, scientist eyed fungi as notable source because of their
abundance and low cost-production. Among the many, Penicillium species like Penicillium
chrysogenum also known as Penicillium notatum is the source of an antibiotic called penicillin.
Lovastatin isolated from an oyster mushroom, Pleurotus ostreatus and red yeast rice Aspergillus
terreus is use for lowering cholesterol and prevention of cardiovascular disease. Cyclosporine,
Significant mushrooms like reishi, shiitake, lingzhi, and chaga are included in Chinses cuisine
and are considered medicinal. Search and discovery for new species of fungi and its family
member is apical in the field of medicine as they can be source effective substances for the
Just recently, in Hong Kong, China, a new species of Xylaria will be discovered. It is
distinguished by its conical stromata, small spores and having teleomorphic characters. It will be
named Xylaria hongkongnesis.2 However, in the Philippines, similar species will be discovered
and isolated in the laboratory at Central Luzon State University. The Philippine strain of Xylaria
hongkongnesis is not yet explored compared to other species. Hence, this study aims to find out
1
Linda Crampton “Penicillin, Lovastatin, and Cyclosporine: Medicines From Fungi” Owlcation August 30,
2019
2
Alvin Ming Chak Tang, Regent Yau Ching Lam & Mike Wing Keung Leung “Xylaria hongkongensis sp.
nov. from an urban tree” Mycotaxon Volume 128, pp. 37–40 April–June 2014
the bioactivities of this fungus’ mycochemicals usind different standard and scientifically
1. What are the mycochemicals present in Xylaria hongkongensis crude extract using thin
layer chromatography?
2. Does the Philippine occurring X. hongkongensis possess antioxidant property using DPPH
3. Does the Philippine occurring X. hongkongensis can inhibit the growth of E.coli and
3. There is no significant difference on the mitotic and mitotic phase indices in Allum cepa
Xylaria hongkongensis.
By conducting this study, the researcher discovered the potential medical and therapeutic
uses of Xylaria hongkongensis. This study finds the potential antioxidant, antimicrobial,
knowing these potential uses of Xylaria hongkongensis, new drugs might be develop in the near
This project is limited to the use of Xylaria hongkongensis Philippine strain mycelia
isolated and characterized from the Center for Tropical Mushroom and Development (CTMRD)
Central Luzon State University (CLSU), Science City of Muñoz, Nueva Ecija. The researcher
focused on evaluating the potential of Xylaria hongkongensis ethanolic extract by identifying the
present bioactive compounds; quantifying the anti-oxidant and phenolic content; and evaluating
the antibacterial property against E. coli and S. aureus, cytotoxic (Brine Shrimp Lethality
Assay), teratogenic and embryotoxic (Zebra fish (D. rerio) Assay) and genotoxic (Onion Root
Mass production of fungus will be done at Bioassay Center, CTMRD, CLSU, Nueva
Ecija. Dried and milled sample will be sent to the Chemistry Laboratory Center for Natural
Sciences at St. Mary’s University in Bayombong, Nueva Vizcaya for ethanol extraction,
mycochemical screening, antioxidant and phenolic content analysis. Antibacterial, brine shrimp
lethality, teratogenic and embryotoxic property screenings will be done in CLSU while the
Biolaboratory, San Miguel National High School, San Miguel, Bulacan. Research-established
models will be used and considered because of their affordability and reliability in terms of
Ethanolic Extraction
Mycochemical Screening
Data Analysis
Forty (40) sterile bottles will be filled with 40 ml mature and aseptically filtered coconut
water. The bottles will be covered with cotton plugs, autoclaved at 15psi, 121°C for 20 minutes
and allowed to cool down. One square centimetre block of pure culture of Xylaria hongkongensis
will be cut and carefully impregnated to the liquid coconut media. The fungi will be incubated at
37 ° C for 15 days.
After 15 days of culturing, the fungi will be harvested, dried for five days and
powdered using a domestic blender. Milled Xylaria hongkongensis will be sent to the Chemistry
Laboratory Center for Natural Sciences at St. Mary’s University in Bayombong, Nueva Vizcaya
for ethanol extraction, mycochemical screening, antioxidant and phenolic content analysis
Mycochemical screening will be carried out to detect the secondary metabolites present.
The plant extract will be spotted on marked and labelled TLC (thin layer chromatography) 7 x 4
cm, and will be developed in the acetate-methanol (7.3) mixture in the developing chamber. The
spots for a certain metabolite will be visualised on the TLC plates and will be exposed under UV
utilized. This solution can determine the presence of Phenols, Sterols, triterpenes and essential
oils. Methanolic potassium hydroxide will be used to test anthraquinones, coumarians, and
anthrones while phenolic compounds and tannins will be detected through the use of potassium
ferricyanide-ferric chloride reagent. Dragendorff’s reagent will be used to spot alkaloids and
Antioxidants are defined as man-made or natural substances that may inhibit or delay
some types of cellular damage from potentially harmful molecules called free radicals. 3 Our
body use some free radicals to fight bacteria and viruses. In the other hand, free radicals can
damage the cells and might contribute to health problems like heart disease, some types of cancer
and cataract.4
be used to make a stock solution and aliquot will be taken to make 1000ppm dilution and
1000ppm of Catechin as control (1mg/ml). 1ml of prepared stock solution will be mixed with
4ml of 0.1mM DPPH solution in separate plastic cuvette. Reactions will be done in triplicate.
The prepared mixtures will be incubated in the dark at 37°C for 30 minutes. The absorbance
the reaction mixture indicated higher free radical scavenging activity. The radical scavenging
activities will be compared to the activity of the control Catechin. The ability to scavenge the
Where Acontrol is the absorbance of the control which is the DPPH without the test sample.
Asample is the absorbance of the test sample containing the mixture of DPPH and the sample.
3
NCCIH, “Antioxidants: In Depth. National Center for Complimentary and Integrative Health”, (2013),
Accessed from https://nccih.nih.gov/health/antioxidants/introduction.htm
4
Healthdirect. “Antioxidants. Healthdirect”. (2018), Accessed from
https://www.healthdirect.gov.au/antioxidants
Total Phenolic Content. The total phenolic content in Xylaria hongkongensis extract
will be detected with the Folin-Ciocalteu reagent. Gallic acid will be used as a standard and the
total phenolic content will be expressed as mg/g Gallic Acid Equivalents (GAE). Concentrations
of 31.25, 15.63, 7.81, 3.91, 1.95, 0.98, 0.49 and 1mg/ml of Gallic acid will be prepared in
methanol. Concentration of 1mg/ml of plant extract will be also prepared in methanol and 0.5 ml
of each sample will be introduced into test tubes and mixed with 2.5 ml of a 10 fold diluted
Folin-Ciocalteu reagent and 2ml of 7.5% sodium carbonate. The tubes will be covered with
parafilm and allowed to stand for 30 minutes at room temperature before the absorbance will be
Escherichia coli are bacterium that is normally found in humans and animal’s intestines.
However, some types of E.coli can cause intestinal infections like diarrhoea, abdominal pain, and
the five most common causes of infections after injury or surgery. This bacterium can cause
many types of health problems like minor skin infections, boils, cellulitis folliculitis, carbuncles,
skin syndrome and abscesses, lung infections or pneumonia, brain infections or meningitis, bone
5
Jill Seladi-Schulman. “E. coli infection”, (2017), Healthline, Accessed from
https://www.healthline.com/health/e-coli-infection
infections or osteomyelitis, heart infections or endocarditis and generalized life threatening blood
Preparation of Test Organisms. Pure E. coli and S. aureus culture will be obtained
from Department of Biological Sciences, Central Luzon State University. The bacteria will be
grown in Nutrient Agar (NA) for 48 hours and transferred in nutrient broth and incubated for 24
hours. It will be sterilized to 1.5 x 108 cells/ml using 0.5 McFarland standards respectively. This
Media Preparation and Sterilization. Thirteen (13) grams of Mueller-Hilton agar will
be suspended in 500 ml distilled water in an Erlenmeyer flask. The suspension will be boiled
until homogenized. The homogenized media will be sterilized using an autoclave at 121°C, 15
psi for 20 minutes. After sterilization, approximately 20ml of the media will be aseptically pour
in sterile petri dish and allowed to solidify. The plate stand in an inverted position for 24 hours
prior to use.
Preparation of Paper disc. Whattman filter paper no. 1 will be punched to produce discs
measuring 6mm in diameter. The discs will be placed in a petri plates and sterile in autoclave at
Preparation of treatments. Three sterilized paper discs will be placed in three petri
6
Ananya Mandal, “What is staphylococcus aureus?”, (2018) News Medical Life Sciences, Accessed from:
https://www.news-medical.net/health/What-is-Staphylococcus-Aureus.aspx
Disc Diffusion Assay. The disc diffusion assay is a method of testing the antibacterial
properties of substances using a channel paper disc. The paper disc is saturated with substance to
be tested and aseptically place in bacteriological media containing the test organism to which
An amount of 0.2 ml from the bacterium inoculum will be spread evenly in the assay
plates using sterile cotton swab. The filter paper discs treated with test substances are placed
equidistantly using sterile needles. The plates are labelled properly and incubated at room
temperature for 24 hours in an inverted position. The zone of inhibitions will be measured using
a ruler in millimetre.
The transparency of the zebra fish embryos makes it easy for identification of cardiac and
skeletal deformities. It exhibits similarity to higher form of vertebrates which makes them a
standard model for toxicity testing8 According to studies, 84 percent of the genes known to be
associated with human disease have a counterpart in the zebra fish genome and 70 percent of
protein-coding human genes are related to zebra fish genes. These findings highlight the
spawning matured female and male zebra fish with a ratio of 1:2. Adult zebra fish will be
7
Jan Hudzicki, "Kirby-Bauer disk diffusion susceptibility test protocol." (2009).
8
Alizza Yvette B. Memita, Sheena D. Macalinao, Lea Esperanza G. Reyes, Ernesto E. Damian Jr. And
Rich Milton R. Dulay “Toxicity And Teratogenicity OF Dieffenbachia amoena Leaf Extract” IJBPAS, August 2018,
7(8): 1591-1600
9
Jayanth A, Muralidhar S.Talkad, “Neuroprotective Activity Of Stachytrapheta Indica On Rotenone
Induced Parkinson’s Disease In Zebra Fish” World Journal Of Pharmacy And Pharmaceutical Sciences Volume 3,
Issue 7, 940-955, 2014
isolated using a plastic mesh and covered with black plastic for 12 hours to induce spawning.
After incubation in the dark, the fishes will be exposed to light to start fertilization. After 30
minutes, the fertilized eggs will be siphoned out of the aquarium. Embryos will be rinse thrice
using embryo water and observed under a stereomicroscope to examine uniformity and normal
condition.10
and dissolved in 9.9 ml of embryo water to produce a stock solution of 10, 000 ppm and serially
diluted to produce 10,000, 1000, 100, 10 and 1 ppm, respectively. Table 1 shows the treatments
prepared including the positive control (1.5% ethanol) and negative control (embryo water).
Table 1
10
Rich Milton R Dulay,., Sofronio P. Kalaw, Renato G. Reyes, and Esperanza C. Cabrera. "Embryo-toxic
and teratogenic effects of Philippine strain of Lentinus tigrinus (tiger sawgill basidiomycetes) extract on zebrafish
(Danio rerio) embryos." Annals of Biological Research 5, no. 6 (2014): 9-14.
Exposure to treatments. Three ml each of the prepared treatments of Xylaria
hongkongensis and controls will be placed into a 24-well ELISA plate. Into each well, four
embryos at segmentation phase (12 hpf) will be transferred. The plates will be incubated at 26°C
± 1°C. At 12, 24, 36 and 42 hpt the mortality and hatchability of the embryos will be recorded.
At 36 hpt, embryos’ heart beat will be recorded. Teratogenic effect of Xylaria hongkongensis
will be examined using a stereo microscope under 40X magnification at 60 hpt. Teratogenic
(malformation of head, tail and heart, scoliosis, deformity of yolk, and growth retardation), lethal
(coagulation, tail not detached, no somites, and no heart-beat), and normal are the parameters for
the morphological endpoint evaluation of zebra fish. Coagulated embryos and no visual heartbeat
Brine Shrimp Lethality Assay (BLSA) is used for preliminary cytotoxic assay of a
specific substance and is dependent on its capacity to kill nauplii.12 It is used as guide for the
detection of antitumor and pesticidal compounds and furthermore an indicator for general
toxicity.13 The availability of cheap brine shrimp eggs and the ease and cheapness of performing
11
Rich Milton R Dulay,., Sofronio P. Kalaw, Renato G. Reyes, and Esperanza C. Cabrera. "Embryo-toxic
and teratogenic effects of Philippine strain of Lentinus tigrinus (tiger sawgill basidiomycetes) extract on zebrafish
(Danio rerio) embryos." Annals of Biological Research 5, no. 6 (2014): 9-14.
12
Sahely Sarah Quazi, , Fatema Chowdhury Anny, and Mir Misbahuddin. "Brine shrimp lethality
assay." Bangladesh Journal of Pharmacology 12, no. 2 (2017): Online-Jun.
13
Lilybeth F. Olowa and Olga M. Nuñeza “Brine Shrimp Lethality Assay of the Ethanolic Extracts of
Three Selected Species of Medicinal Plants from Iligan City, Philippines” International Research Journal of
Biological Sciences, November 2013 Vol. 2(11), 74-77
14
H. A. El-Fadal., Sherif Mohamed El-Kadi, Mostafa Maher El-Moghazy, Ahmed Ali Soliman, and
Mahmoud Salama Mahmoud El-Haysha. "Correlation Between Active Components of Rocket (Eruca sativa) as
Cytotoxicity (Brine Shrimp Lethality Assay)." American Journal of Biomedical Science and Engineering 3, no. 2
(2017): 20-24
Spawning of Brine shrimp cysts. Nineteen grams of Sodium chrloride (NaCl) will be
dissolved in 500 mL of distilled water to produce 38% artificial sea water (ASW) suitable for the
spawning brine shrimps (Artemia salina ). Two milligram of brine shrimp cysts will be allowed
to hatch in the ASW for 48 hours in constant aeration and illumination. After 48 hours, nauplii
100, 10, and 1 ppm) will be prepared. Table 2 shows the treatments including the positive
Table 2
Treatment 1 10000
Treatment 2 1000
Treatment 3 100
Treatment 4 10
Treatment 4 1
Positive Control (Potassium dichromate)
Negative control ( Artificial sea water)
Exposure to Treatments. Ten brine shrimps will be introduced in each test tube
containing four mL each of test solutions including the controls. The mortality of the nauplii will
be observed and recorded after 24 hours of exposure. The procedure will be done in triplicates
treatments, the mortality of the brine shrimp will be counted and recorded. By dividing the
number of dead nauplii by the total number of brine shrimp and multiplying it to 100 will give
the percent mortality. To ensure that the mortality of nauplii will be due to the bioactive
Preparation of treatments. Serial dilution will be used in making 1000, 500, 250 and 125
μL/ml of Xylaria hongkongensis. Table 3 shows the treatments prepared including the positive (5
mg/L Maleic hydrazide) and negative controls (Distilled water with 1% DMSO).
15
Geirid Fiskesjo, “The allium test-as a standard in environmental monitoring. Hereditas” 102:99-112.
(1985)
16
Cresencio C. Cabuga Jr., Julene Joy Z. Abelada , Rene Rose Q. Apostado , Brent Joy H. Hernando, John
Erick C. Lador, Owen Lloyd P. Obenza, Christian James R. Presilda, Honelyn C. Havana “Allium cepa test: An
evaluation of genotoxicity” Proceedings of the International Academy of Ecology and Environmental Sciences,
2017, 7(1): 12-19
Table 3.
Treatment 1 1000
Treatment 2 500
Treatment 3 250
Treatment 4 125
Treatment 5 Positive control (5 mg/L Maleic hydrazide)
Treatment 6 Negative control (Distilled water with 1% DMSO)
Macroscopic Analysis. Macroscopic analysis will be carried out to find out the effect of
Xylaria hongkongensis on A. cepa’s root length and to compute the EC50 half maximal lethal
dose, the effective concentration to inhibit the root lengths exposed in the negative control.17
Identical 18 onion bulbs will be purchased from San Miguel Public Market. Onions’ dry
scales will be peeled off. Old roots will be removed using a scalpel to expose the root primordia.
The bulbs will be exposed to X. hongkongensis different concentrations, positive control and
negative control in 72 hours. After three days, the root lengths will be measured using a ruler and
submerged to Farmer’s fluid (three parts Ethyl alcohol and one part Glacial acetic acid) in 24
Microscopic analysis. Fixed onion root tips will be carefully placed in a slide and cut by
2mm. A drop of 1N HCl (Hydrochloric acid) will be used to hydrolyse the roots for 4-5 minutes.
17
Peter Firbas & Tomaz Amon, “Chromosome damage studies in the onion plant Allium cepa L..
Caryologia. International Journal of Cytology, Cystosystematics and Cytogenetics.”2014 67:1, 25-35
Aceto-carmine will be added to the treated slide to stain the chromosomes. The slide will be set
over the flame of an alcohol lamp and covered using a cover slip. The cells will be pressed and
excess stain will be expelled. A clear nail polish will be used to seal the cover slip.18 The cells
will be observed under a binocular microscope with 400x magnification in the laboratory of
Natural Science Research Institute (NSRI) – UP Diliman Campus to take a closer observation to
the cells, and the stages of mitosis. The mitotic index and mitotic phase index will be computed
The mitotic index (MI) will be computed by counting the numbers of cells under the
In addition, Mitotic Phase Index (MPI) will be computed by counting the number of cells
in the prophase, metaphase, anaphase, and telophase using the formula below:
After the conduct of the study, the chemicals, reagents, and solvents used will be
disposed into their organic and inorganic containers. Used and unused Allium cepa will be put in
18
O. A. El-Shahaby, HM Abdel Migid, M. I. Soliman, and I. A. Mashaly. "Genotoxicity Screening of
Industrial Will betewater Using the Allium сера Chromosome Aberration Assay." Pak. J. Biol Sci 6, no. 1 (2003):
23-28.
The microorganisms and agar used in the antimicrobial test will be autoclaved. The brine
shrimps will be bleached while zebra fish embryos will be put into ice and disposed according to
extract, Analysis on Variance (ANOVA) will be used. Trend Line Fit Regression Analysis in
Microsoft Excel 2016 will be used to determine the half-maximal effective concentration (EC50)
on Onion Root Tip Chromosomal Aberration Assay and brine shrimp lethality assays.
References
Alvin Ming Chak Tang, Regent Yau Ching Lam & Mike Wing Keung Leung “Xylaria
hongkongensis sp. nov. from an urban tree” Mycotaxon Volume 128, pp. 37–40 April–
June 2014
Alizza Yvette B. Memita, Sheena D. Macalinao, Lea Esperanza G. Reyes, Ernesto E. Damian Jr.
And Rich Milton R. Dulay “Toxicity And Teratogenicity OF Dieffenbachia amoena Leaf
Ananya Mandal, “What is staphylococcus aureus?”, (2018) News Medical Life Sciences,
Aureus.aspx
Cresencio C. Cabuga Jr., Julene Joy Z. Abelada , Rene Rose Q. Apostado , Brent Joy H.
Hernando, John Erick C. Lador, Owen Lloyd P. Obenza, Christian James R. Presilda,
Dulay, Rich Milton R., Sofronio P. Kalaw, Renato G. Reyes, and Esperanza C. Cabrera.
El-Fadaly, H. A., Sherif Mohamed El-Kadi, Mostafa Maher El-Moghazy, Ahmed Ali Soliman,
of Industrial Will betewater Using the Allium сера Chromosome Aberration Assay." Pak.
Geirid Fiskesjo, “The allium test-as a standard in environmental monitoring. Hereditas” 102:99-
112. (1985)
Geirid Fiskesjo, “The allium test-an alternative in environmental studies: the relative toxicity of
https://www.healthdirect.gov.au/antioxidants
Rotenone Induced Parkinson’s Disease In Zebra Fish” World Journal Of Pharmacy And
Jiao-Jiao Zhang , Ya Li , Tong Zhou , Dong-Ping Xu , Pei Zhang , Sha Li and Hua-Bin Li
“Bioactivities and Health Benefits of Mushrooms Mainly from China” Molecules 2016
https://www.healthline.com/health/e-coli-infection
Linda Crampton “Penicillin, Lovastatin, and Cyclosporine: Medicines From Fungi” Owlcation
Lilybeth F. Olowa and Olga M. Nuñeza “Brine Shrimp Lethality Assay of the Ethanolic Extracts
International Research Journal of Biological Sciences, November 2013 Vol. 2(11), 74-
77
NCCIH, “Antioxidants: In Depth. National Center for Complimentary and Integrative Health”,
Peter Firbas & Tomaz Amon, “Chromosome damage studies in the onion plant Allium cepa L..
67:1, 25-35
Sarah, Quazi Sahely, Fatema Chowdhury Anny, and Mir Misbahuddin. "Brine shrimp lethality