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Antibacterial drug discovery in the 21st century

K. Bush

Johnson & Johnson Pharmaceutical Research & Development, L.L.C., NJ, USA

ABSTRACT
Antibacterial research over the past 50 years has been focused on meeting medical needs caused by
infectious, life-threatening pathogens. In spite of the introduction of a variety of antibacterial agents in
multiple unrelated drug classes, resistance continues to emerge. The pharmaceutical industry must
respond to these clinical challenges by bringing forward a stream of new agents with antibacterial
activity against resistant bacteria. Although the projected growth of the anti-infective area may not be as
large as for some therapeutic areas, development advantages for these agents include their higher
predictability for success, well-defined biomarkers, shorter clinical trials, and shorter duration of
therapy leading to fewer long-term safety concerns. Anti-infectives are still attractive commercially,
representing the third largest therapeutic area in terms of worldwide sales of $45 bn, with growth
predicted at least through 2010, particularly for the hospital-related products. Finally, companies that
conduct anti-infective research demonstrate their social responsibility by developing agents to treat
patients with acute and potentially fatal illnesses.
1 Keywords Antibacterial agents, antibiotics, drug discovery, research, anti-infective, resistance

Clin Microbiol Infect 2004; 10 (Suppl. 4): 10–17

Although many of the former corporate leaders


INTRODUCTION
have recently scaled back their efforts in this area,
Antibacterial drug discovery research, accom- antibacterial drug discovery remains an import-
panied by clinical development, has historically ant opportunity for at least some of the pharma-
been conducted by large pharmaceutical com- ceutical sector. In this article, four major reasons
panies. Although the earliest antibiotics were to support the continuation of antibacterial drug
first identified in academic laboratories such as discovery are provided: medical needs based on
those of Alexander Fleming (penicillin) [1] and the continued increase in resistant pathogens,
Selman Waksman (streptomycin) [2], pharma- development advantages, commercial viability,
ceutical companies were responsible for success- and social factors.
ful strain optimisation, compound scale-up,
formulation and clinical development activities
MEDICAL NEED
that allowed anti-infective drug research to gain
prominence as a viable area for corporate Resistance
investment. After the successful commercialisa-
Soon after each antibacterial agent entered into
tion of penicillin following the Second World
clinical practice, resistance was reported in at
War, companies like Abbott, Beecham, Bristol,
least one bacterial pathogen (Table 1). Because the
Glaxo, Lederle, Lilly, Merck, Pfizer, Roche,
first antibiotics, excluding the synthetic sulfa
Schering and Squibb became leaders in antibi-
drugs, were all identified or derived from natural
otic development and maintained active antibac-
products, resistance determinants had already
terial research organisations for decades.
accumulated in the environments from which
these agents originated. It was only a short period
of time before selection pressures allowed these
Corresponding author and reprint requests: Karen Bush,
Johnson & Johnson Pharmaceutical Research & Development,
environmental resistance determinants to become
LLC 1000 Route 202 Raritan, NJ 08869, USA incorporated into the pathogenic bacteria that
E-mail: kbush@prdus.jnj.com were being treated with the new antibiotics.

 2004 Copyright by the European Society of Clinical Microbiology and Infectious Diseases
Bush Antibacterial drug discovery in the 21st century 11

Table 1. Reported resistance to new agents following approval for clinical use

Agent for which Resistance Mechanism of


resistance was observed FDA approval reported resistance

Penicillin G 1943 1940 Penicillinase production [3]


Streptomycin 1947 1947 (Mutation in ribosomal protein S12)a [4]
Tetracycline 1952 1952 (Efflux)a [4]
Penicillin and tetracycline 1943 and 1952 1976–80 Plasmid-encoded broad spectrum
(Neisseria gonorrhea b-lactamases and tetracycline efflux pump [5]
and enterobacteriaceae)
Methicillin (and 1960 1961 MecA (penicillin-binding protein 2a) [6]
eventually all b-lactams
in S. aureus)
Nalidixic acid 1964 1966 Topoisomerase mutations [7]
Gentamicin 1967 1969 Aminoglycoside modifying enzyme [8]
Cefotaxime 1981 1981 AmpC b-lactamase [9]
1983 Extended-spectrum b-lactamases (ESBLs) [10]
Linezolid 2000 1999 23S RNA mutation [11,12]
a
Assumed to be resistance mechanism. Not identified at time of report.

Selection of resistant strains occurred so the plasmid-mediated resistances, whereby a


quickly for some bacteria-antibiotic combinations resistant strain selected by one antibiotic can
that clinical utility of the antibiotic was severely result in resistance to other antibiotic classes due
diminished within a 5-year time span. The first to the presence of multiple resistance determi-
documented example of the rapid selection of a nants in the same operon. Most importantly, these
resistant population was the increase in penicillin plasmids can be transferred among species,
resistance from £8% to almost 60% in Staphylo- resulting in multifactorial resistance in organisms
coccus aureus from 1945 to 1949 (Fig. 1). In many such as Escherichia coli, Klebsiella pneumoniae and
cases, chromosomal mutations led to class resi- Pseudomonas aeruginosa.
stances to other closely related agents, allowing Following the identification of resistance to a
for the emergence of clonal strains when subjec- class or to a specific agent, the pharmaceutical
ted to antibiotic pressures. Examples of chromo- industry has responded with new generations or
somal mutations leading to class resistances new classes of drugs (Table 2). Examples of these
include topoisomerase mutations selected by nal- were the development of the ‘penicillinase-stable
idixic acid and later fluroroquinolones, and selec- penicillins’ to counteract Gram-positive b-lacta-
tion of derepressed AmpC b-lactamases by any of mases, second generation aminoglycosides to
a number of second and third generation cephalo- avoid streptomycin resistance, third generation
sporins. Of perhaps even graver consequence are cephalosporins to provide improved activity
against Gram-negative pathogens, the ketolide
telithromycin to avoid macrolide resistance in the
100 pneumococci, and linezolid in a novel class of
Penicillinase-producing

synthetic oxazolidinones with no cross-resistance


75
to any known antibiotic class. However, in all
S. aureus

cases, resistance has emerged to the new agents,


thus repeating the cycle (Table 1).
%

50
At this time in the history of the antibiotic
world, one might imagine that all resistance
25 mechanisms could be overcome by at least some
agent. Indeed, some have stated that virtually all
0 infections can be treated by at least a combination
1940 1950 1960 1970 1980 1990
of effective drugs, so it is not necessary to develop
Year new agents. Unfortunately, that is not the case, as
Fig. 1. Rapid increase in penicillinase production in S. au- evidenced by the multidrug-resistant enteric bac-
reus [13,14]. teria, and the pan-resistant pseudomonads that

 2004 Copyright by the European Society of Clinical Microbiology and Infectious Diseases, CMI, 10 (Suppl. 4), 10–17
12 Clinical Microbiology and Infection, Volume 10 Supplement 4, 2004

Table 2. Medical needs and drugs developed to meet them

Drugs developed to counteract specific resistance


Resistance
causing medical need Approved drugs Drugs currently in development

Penicillinase producing Penicillinase-stable penicillins: oxacillin, BAL5788, RWJ-54428


S. aureus methicillin, cloxacillin, dicloxacillin
First- and second-generation cephalosporins:
cefaclor, cephradine, cephalexin, cephalothin
Tetracycline resistance Minocycline, doxycycline Tigecycline
Gentamicin resistance Tobramycin, amikacin None
Nalidixic acid Norfloxacin, ciprofloxacin, ofloxacin, Garenoxacin
levofloxacin, gatifloxacin, moxifloxacin,
gemifloxacin
TEM-1 b-lactamase in Third- and fourth-generation cephalosporins: No specified drugs
Neisseria gonorrhea followed cefoperazone, cefotaxime, ceftazidime,
by increase in plasmid-mediated ceftriaxone, cefepime
penicillin resistance in Monobactams: aztreonam
Gram-negative rods Carbapenems: imipenem
b-Lactamase inhibitors: clavulanic acid,
sulbactam, tazobactam
b-Lactam resistance caused by Quinupristin-dalfopristin, linezolid, Oritavancin, dalbavancin, ramoplanin,
production of MecA (penicillin- daptomycin tigecycline, iclaprim, BAL5788,
binding protein 2a) in S. aureus RWJ-54428
Extended-spectrum b-lactamases Carbapenems: meropenem, ertapenem Tigecycline, doripenem
(ESBLs) in Enterobacteriaceae
Vancomycin resistance Quinupristin-dalfopristin, linezolid, Oritavancin, ramoplanin, tigecycline
in enterococci daptomycin
Macrolide-resistant streptococci Telithromycin No specified drugs

are currently being treated with the toxic mem- (vancomycin-resistant enterococci). With the
brane-disruptive polymyxins [15]. increasing threats from less resistant but more
With the approval of the three most recent virulent community-acquired MRSA strains [16],
antibacterial agents, linezolid in 2000, daptomycin it should be expected that orally active agents
in 2003 and telithromycin in 2002–04, three new other than b-lactams will be of high interest. As
classes of agents have been introduced into the indicated by Livermore in this supplement [17],
marketplace. However, as might be expected, other medical needs may be met with new agents
resistance has already been reported for all three to treat infections caused by MDR pathogens such
agents, thus providing an opportunity for addi- as, Pseudomonas aeruginosa, Stenotrophomonas
tional agents in these classes to overcome the new maltophilia, Acinetobacter spp., Enterococcus faecium,
resistances identified. MDR enterobacteriaceae and MDR Mycobacterium
tuberculosis. All but MDR M. tuberculosis are
usually associated with hospital infections, thus
Unmet needs and resistance
indicating that drugs in the hospital market will
Why, or when, does a research organisation make continue to provide opportunities to meet in-
the decision to develop a new drug to counteract creased medical needs.
resistance? A major factor must be unmet medical
need. This need is closely tied to the rapidity and
Emerging diseases
proliferation of resistance development, and the
number of other drugs that may be used for As we try to predict the future needs in infectious
the same therapeutic indication. One can cite diseases, there are always going to be unpredict-
the recent flurry of activity to develop able factors such as the appearance of new
drugs to treat multidrug resistant (MDR) Gram- diseases, or the newly recognised association of
positive bacteria, including MRSA (methicillin- established diseases with infectious agents.
resistant Staphylococcus aureus) and VRE Examples of previously unrecognised infectious

 2004 Copyright by the European Society of Clinical Microbiology and Infectious Diseases, CMI, 10 (Suppl. 4), 10–17
Bush Antibacterial drug discovery in the 21st century 13

diseases are Legionnaire’s disease that was found


Dosing advantages
to be associated with Legionella pneumophila [18],
and multiple viral diseases such as ebola, AIDS, In addition to a medical need to treat a resistant
hepatitis C and SARS. Diseases described before infection, there can be less obvious medical
they were known to be caused by infectious advantages offered by new agents. Frequency of
agents include cat scratch disease caused by dosing is one area in which new drugs have made
Bartonella henselae [19], and gastric ulcers caused an important difference. An early example was
by Helicobacter pylori [20]. In addition, diseases the replacement of ampicillin by amoxicillin
that were once thought to be under control by because the dosing regimen changed from four
existing therapies may re-emerge, such as cholera, times a day to three times a day. Ceftriaxone with
dengue and pertussis. once-a-day dosing became a more highly used
As with the case of H. pylori and ulcers, there is drug than cefotaxime dosed three times a day, in
a great deal of curiosity in the infectious disease spite of the fact that cefotaxime was introduced to
community as to possible anti-infective links with the market first and had an interchangeable
other chronic diseases such as cardiovascular or spectrum of activity with ceftriaxone. Also,
neurological disorders. Clinical studies that have levofloxacin with once-a-day dosing replaced
studied the effect of azithromycin therapy on the twice-a-day ciprofloxacin as the leading hospital
treatment of atherosclerosis have been equivocal, fluoroquinolone. These changes in dosing regi-
in part, because it has not been convincingly mens can result in higher patient compliance,
determined whether the Chlamydia pneumoniae in especially in the outpatient population where
arterial plaque is the causative agent or present as once-a-day dosing has become the standard of
an innocent bystander in a favourable environ- care. In the hospital setting, reduced dosing
mental niche [21,22]. However, if a causal associ- frequencies can lead to lower medical costs due
ation is proven, a large commercial opportunity to the resources involved in delivering parenteral
awaits the company that can present data from a agents. There also are advantages offered by
positive trial with a new antichlamydial agent. providing both oral and parenteral agents so that
Likewise, hints of associations between C. pneu- hospitalised patients can be transferred from
moniae and Alzheimer’s disease or asthma [23,24] intravenous (i.v.) therapy to oral therapy on the
suggest that there may be additional chronic same drug, and subsequently released from the
illnesses that may ultimately benefit from anti- hospital earlier. These attributes are shared by
bacterial therapy. If these opportunities are devel- many of the fluoroquinolones and by linezolid
oped in the future, this will provide another set of where both oral and i.v. forms are available.
pressures to increase antibacterial resistance, and
will provide incentives for companies to identify Safety improvements
new organism-specific agents.
Finally, there is now the threat of epidemic Improvement in safety can also provide an oppor-
outbreaks of resistant organisms in attacks of tunity for development of a second- or third-in-
bioterrorism. Although the mail attacks of anthrax class agent. Although some adverse events are
in the USA were fortunately conducted with a inherently associated with specific antibiotic clas-
highly susceptible Bacillus anthracis strain in 2001 ses, the degree to which these manifest can vary
[25], it is now well established that antibiotic- greatly. Nephrotoxicity with cephalosporins can be
resistant strains can be readily selected in vitro [26], a major problem, with drugs like cephaloridine
thus leading to the possibility of more resistant removed from the market because of their renal
strains appearing in the future. Because inhala- toxicity. However, the plethora of ‘cephawhat-
tional anthrax is most frequently a fatal disease chamacallums’ in the 1980s [28] can be attributed to
due to rapid toxin production, opportunities are the fact that the newer cephalosporins exhibited
available to approach this disease state more good safety profiles with minimal nephrotoxicity
creatively, with the development of drugs to attack when normal doses were given. Fluoroquinolones
the toxin itself, in addition to the use of classical generally exhibit binding to the hERG ion channel
antibacterial agents to eradicate the bacteria [27]. as a class, but the IC50 values for binding in the
And, development of safe and effective vaccines is patch clamp assay can vary by as much as two
still an option that is frequently ignored. orders of magnitude, from 18 lM for sparfloxacin to

 2004 Copyright by the European Society of Clinical Microbiology and Infectious Diseases, CMI, 10 (Suppl. 4), 10–17
14 Clinical Microbiology and Infection, Volume 10 Supplement 4, 2004

1420 lM for ofloxacin [29]. Thus, there may be room Table 3. Average months in each development phase
to improve safety profiles and drug–drug interac- according to therapeutic area [34]
tions for currently existing antibacterial agents Average number of months Phase Phase Phase
such as linezolid with its reversible monoamine Therapeutic Area I II II NDA
oxidase inhibition [30] and telithromycin with its
reversible cytochrome P450 interactions [31]. Anti-infectives 11 14 36 24
Cardiovascular 17 35 39 30
NSAID 21 23 55 39
DEVELOPMENT FACTORS Neuropharmacological 14 24 41 43

Attractive development opportunities


well-established in vitro testing to show that drugs
Development of anti-infective agents offers cer-
can get to their targets and have the desired
tain attractions not seen with some other thera-
therapeutic effect, i.e., killing of the micro-organ-
peutic areas. Based on historical data through the
ism. Second, good predictive in vivo efficacy mod-
end of 1999, the probability of an investigational
els have been established for a variety of infections
anti-infective agent entering the market was
caused by specific target organisms, leading to
higher than for agents in other therapeutic areas,
reassurance that clinical trials have a high probab-
as shown in Fig. 2 [32]. This advantage is
ility of success. Third, there are clearly defined
especially notable when success was measured
biomarkers to allow for monitoring of patients in
from the first human dose (Phase 1), first patient
clinical trials. Fourth, the use of pharmacodynam-
dose (Phase 2) or first pivotal dose (Phase 3) when
ics to predict efficacy, optimal doses, and the
anti-infective agents were compared with cardio-
potential for resistance selection has become a
vascular, oncology or central nervous system
sophisticated art in the anti-infective area. And
(CNS) drugs [33].
fifth, safety issues, especially for hospital-admin-
Other historical data indicate that FDA appro-
istered drugs, tend to be less than for drugs that are
val times were faster for anti-infective agents
prescribed for chronic illnesses where a patient will
compared with drugs in the other therapeutic
take a drug for the rest of his life. Finally, for
areas. As seen in Table 3, during each develop-
community drugs with decreased dosing regimens
ment phase, anti-infectives had the shortest resi-
of 3–5 days, long-term safety and follow-up stud-
dency time compared with cardiovascular,
ies lasting for years are generally not required,
NSAIDs and CNS agents [34]. In addition, the
thereby leading to shorter clinical trials.
capitalised clinical costs per approved NCE were
lowest for anti-infective drugs compared with the
other therapeutic areas [34]. Development role for large companies
Several possible reasons may be cited for the
Large pharmaceutical companies must continue to
development advantages for anti-infective drugs.
play a major role in the discovery and development
First, the drug targets are clearly delineated, with
of new anti-infective agents. Companies with
active antibacterial research and development
% of NCEs approved by January 1, 2000 programmes currently have the resources and
Number of NCEs with INDs filed from 1981 to 1992
talent to be able to take a drug from the conception
30
stage through to full FDA approval. The basic
20 research scientists in these groups have established
10
resources in terms of financial support and facilit-
ies, and have the experience and commitment to
0 follow a drug from identification through to study-
e
y

tic
r
S

al

ing clinical isolates for mechanisms of resistance.


la
ce
r

in

ive
N

in
to

he
cu

cr
C

an

st
ra

ct
st
do
as

te
C
pi

fe

Development scientists have expertise to run the


ae
ov

in
En
es

in
tro

an

ti-
di
R

An
ar

c/
as

toxicology and drug metabolism studies, to scale-


si
C

ge
al

up compounds under GMP conditions for clinical


An

Fig. 2. Success rates according to therapeutic class for self-


supplies, and to formulate the agents in pharma-
originated NCEs that had INDs first filed from 1981 to 1992 cologically acceptable forms. Clinical scientists
[32]. have experience in running clinical trials, with

 2004 Copyright by the European Society of Clinical Microbiology and Infectious Diseases, CMI, 10 (Suppl. 4), 10–17
Bush Antibacterial drug discovery in the 21st century 15

appropriate contacts and clinical sites in place for Table 4. Worldwide pharmaceutical sales of agents in
future studies. And, regulatory groups have various therapeutic areas including prescription and over-
the-counter sales
experience with the various regulatory agencies
so that proper documentation and records are 2002 Total
maintained and filed throughout the development Sales Sales Population
process. It is imperative that companies with these Therapeutic Area ($bn)a (%)a sharesb
sets of experienced investigators maintain a critical Cardiovascular 67 16.8 23.2
mass before this expertise is filtered away into CNS 64 16.0 17.9
other therapeutic areas. Anti-infectives 45 11.2 12.8
Because many of the same functions are in Gastrointestinal 35 8.7 2.1
Respiratory 33 8.2 6.0
place for all therapeutic areas, a large company
Endocrinology ⁄ 32 8.0 7.0
can capitalise on the knowledge from other metabolic
groups. Shared resources such as scale-up chem- Oncology ⁄ immunology 27 6.7 12.4
istry, formulations, toxicology, metabolism and Rheumatology ⁄ 23 5.7 NDc
regulatory groups can work on compounds from musculoskeletal
Haematology 22 5.5 ND
any therapeutic area, so dedicated personnel are Miscellaneous 53 13.2 18.3
not lying in wait for the next compound to enter Total 401 (100) (100)
development. Also, because the return on invest- a
IMS Health World Review.
ment may be perceived to be lower for anti- b
Data through 2000 [37].
infective drugs [35], the ability to balance a c
No data provided.
portfolio with drugs from multiple therapeutic
classes means that large companies can afford to
stay in less lucrative areas of research such as to introduce a billion-dollar drug every year to be
antibacterial development. profitable. If a mix of parenteral agents is sold by
a single company, sales exceeding $1 bn can be
achieved by using the same hospital sales force to
COMMERCIAL VIABILITY market three drugs with sales of $400 m or less.
Over the next 5 years growth in the critical care
Worldwide sales antibacterial market is projected to increase con-
In addition to the scientific and developmental sistently, based on the increase in antibiotic sales
opportunities in the anti-infectives area, it is still from 1999 to 2002 [38]. This growth can be directly
necessary to show that there is a commercial related to the increase in serious infections caused
rationale for staying in this area. When worldwide by problem Gram-negative pathogens that are
pharmaceutical sales are broken down by thera- invading the intensive care units of hospitals. It is
peutic area, anti-infective agents rank third, interesting to note that sales appear to grow for
behind cardiovascular and CNS drugs (Table 4) quinolones, carbapenems and new agents, but are
[36,37]. The anti-infective market with US $45 bn
in sales is further divided into antibacterial,
Table 5. Worldwide anti-infective market sales and pro-
antifungal and antiviral areas (Table 5), with jected growth [36]
antibacterial sales providing almost two-thirds of
the total revenue [36]. Although other areas of Sales Annual
anti-infective drugs have been projected to grow Anti-infective in $bn 4 years growth
area (% Total) CAGRa in sales ($bn)
faster than antibacterial agents for the next few
years, all sectors show a positive growth rate, with Antibacterials 27.9 (62%) +6% 1.7
an overall growth of 10% for all anti-infectives. HIV antivirals 5.4 (12%) +22% 1.2
Interestingly, when the increase in sales is Non-HIV antivirals 2.7 (6%) +22% 0.6
Antifungals 3.2 (7%) +10% 0.3
computed in terms of actual dollars, the largest Sera, vaccines and 5.9 (13%) +14% 0.8
absolute increase in growth is projected for the immunoglobulins
antibacterial group (Table 5). This total represents Total 45 (100%) +10% (4.5)b
an increase of $1.7 bn per year. Although com- a
Compounded annual growth rate based on data from
panies like to boast about the number of billion- 1998 to 2002.
b
dollar drugs in their portfolio, one does not need Values do not add up to $4.5 bn due to rounding.

 2004 Copyright by the European Society of Clinical Microbiology and Infectious Diseases, CMI, 10 (Suppl. 4), 10–17
16 Clinical Microbiology and Infection, Volume 10 Supplement 4, 2004

projected to decrease or remain steady for the Shlaes [39] and from Powers [40] in this supple-
penicillins and cephalosporins. This may reflect the ment. With the increasing multidrug resistance
increase in generic agents available in those areas, that threatens our entire armamentarium of anti-
or the increasing resistance to these agents among biotics, it is imperative that new agents continue
Gram-negative pathogens. to be developed. And, perhaps more importantly,
it is critical that large pharmaceutical companies
continue to fund basic research to identify the
CORPORATE RESPONSIBILITY new agents that will be able to circumvent newly
emerging mechanisms. There are sound scientific,
Social commitment
medical, developmental and commercial reasons
Every pharmaceutical company has established a for companies to remain in the anti-infective
position of social and corporate responsibility to therapeutic area. Although we will always live
meet the medical needs of its customers. A survey in a world coinhabited by antibiotic-resistant
of corporate websites has identified statements bacteria, we have a social commitment to devise
of corporate responsibility for virtually every new approaches to contain them before it is too
pharmaceutical company in the Western world. late.
These statements, although unique to a specific
company, all include many similar expressions
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