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Curr Genet

DOI 10.1007/s00294-017-0683-x

REVIEW

Quorum sensing by farnesol revisited


Melanie Polke1 · Ilse D. Jacobsen1,2,3 

Received: 26 January 2017 / Revised: 1 February 2017 / Accepted: 7 February 2017


© Springer-Verlag Berlin Heidelberg 2017

Abstract  Quorum sensing, a form of molecular com- Keywords  Quorum sensing · Candida albicans ·
munication in microbial communities, is relatively well Farnesol · EED1 · Bacteria
studied in bacterial species, but poorly understood in
fungi. Farnesol, a quorum sensing molecule secreted by
the opportunistic human pathogenic fungus Candida albi- Introduction
cans, was the first quorum sensing molecule described in
a eukaryotic organism. However, despite considerable Most microorganisms live in complex environments that
research efforts and advances in recent years, the mecha- they share with numerous other microbial, protozoan and
nisms behind its action remain largely elusive. Only multicellular organisms. In order to survive, they have to
recently, we showed that deletion of the C. albicans gene sense not only their environment, but also organize behavior
EED1 (eed1Δ), which is essential for hyphal maintenance, on a population basis. This is commonly mediated by small
resulted in both increased farnesol production and hyper- secreted molecules that accumulate depending on cell den-
sensitivity to farnesol, providing a link between farnesol sity, and upon reaching a threshold, influence cell behavior,
signaling and elongated hyphal growth. This finding raised a mechanism termed quorum sensing (QS). Since the discov-
several questions concerning farnesol signaling. In this ery of QS in Vibrio fischeri in 1970 (Nealson et al. 1970), QS
short review we use the unique phenotype of the eed1Δ systems were identified in a large number of bacterial species
mutant to summarize current hypotheses and to speculate (Kimura 2014), including a wide range of human pathogens
on possible mechanisms of quorum sensing in C. albicans where they regulate important virulence traits reviewed in
and its implication in fungus–host interaction, by drawing Williams et  al. (2000), Miller and Bassler (2001), Bassler
comparisons to comparatively well-studied quorum sensing (2002), Antunes et al. (2010), Rutherford and Bassler (2012),
systems in bacteria. Castillo-Juarez et  al. (2015), and Yang and Lan (2016). QS
has long been suspected to also occur in fungi (Yen and How-
ard 1970; Hazen and Cutler 1979), and the first quorum sens-
ing molecule (QSM) identified in a eukaryotic organism was
Communicated by M. Kupiec.
farnesol in the polymorphic yeast Candida albicans (Hornby
* Ilse D. Jacobsen et al. 2001). C. albicans is an opportunistic human pathogen
ilse.jacobsen@leibniz‑hki.de that occurs as a commensal on the mucosal surfaces in the
1
majority of the healthy human population (Odds 1987; Kim
Research Group Microbial Immunology, Leibniz Institute
and Sudbery 2011). Importantly, C. albicans is a pleomor-
for Natural Product Research and Infection Biology, Hans
Knoell Institute (HKI), Beutenbergstrasse 11a, 07745 Jena, phic fungus that can grow as budding yeast and also form
Germany filaments under a wide variety of conditions (Biswas et  al.
2
Friedrich Schiller University, Jena, Germany 2007; Sudbery 2011; Du and Huang 2016). The formation of
3 true hyphae is considered one of the major virulence traits of
Integrated Research and Treatment Center, Center for Sepsis
Control and Care (CSCC), University Hospital, Jena, C. albicans (Kumamoto and Vinces 2005) and this is affected
Germany by farnesol: farnesol inhibits the yeast-to-hypha transition

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Curr Genet

(Hornby et  al. 2001) and promotes reverse morphogenesis, 2016). However, the basic principle of bacterial QS sys-
the production of budding yeast from hyphae (Zhang et  al. tems appears to be conserved: they consist of an enzyme
2011; Lindsay et  al. 2012; Polke et  al. 2016). Because of which catalyzes production of the active QSM, and a recep-
this, and since farnesol also acts synergistically with antifun- tor for the QSM, which directly or indirectly reprograms
gal therapy (Yu et al. 2012; Cordeiro et al. 2013; Katragkou the cellular gene expression resulting in a cellular response.
et  al. 2015), it has been proposed as adjunctive therapeutic Much less is known about farnesol signaling in C. albicans:
agent (Hornby et al. 2001). However, farnesol also affects the farnesol is produced as a byproduct of the ergosterol syn-
mammalian host and actually promotes pathogenesis (Navar- thesis in C. albicans (Hornby et  al. 2003), however, the
athna et al. 2007a, b), possibly due to its detrimental effects exact mechanism of farnesol production from its precursor
on immune cells (Navarathna et al. 2007b; Abe et al. 2009; farnesol pyrophosphate remains poorly understood. While
Ghosh et al. 2010; Leonhardt et al. 2015). In addition to inter- the pyrophosphatase Dpp3 has been implicated in mediat-
action with its host, as a commensal C. albicans has to com- ing farnesol production (Navarathna et  al. 2007a; Zhang
pete and interact with other fungi and a plethora of bacterial et  al. 2011; Chang et  al. 2012), farnesol levels were not
species that inhabit the same host niches. QSMs are major decreased by deletion of DPP3 in a C. albicans SC5314
chemical mediators of communication between microbes in wild type background (Polke et al. 2016), implicating that
this complex environment. Farnesol produced by C. albicans further pyrophosphatases are involved (Nickerson and
has profound inhibitory effects on various fungi and bacteria Atkin 2016; Polke et al. 2016). DPP2 and DPP1 have been
(recently reviewed in Langford et  al. (2009), Shirtliff et  al. suggested as candidates (Navarathna et al. 2007a; Ganguly
(2009b), Dixon and Hall (2015), and Allison et  al. (2016)). et al. 2011; Polke et al. 2016); however, experimental proof
In turn, bacterial QSMs such as N-acyl homoserine lactones linking these genes encoding for phosphatases to farnesol
(AHL), certain cis-unsaturated fatty acids termed diffus- production is lacking.
ible signal factors (Ryan and Dow 2011), and autoinducer-2 Most QSMs freely diffuse over the bacterial membrane;
(cyclic oligopeptides, Sun et  al. 2004) from bacteria act on however, active transport is necessary for AI-2, short oli-
C. albicans (recently reviewed in Dixon and Hall (2015) and gopeptide QSMs secreted by Gram-positive bacteria (Jime-
Allison et al. (2016)). However, the mechanisms underlying nez and Federle 2014; Monnet et  al. 2014). It has also
these interactions and the complexity of the communication been described for other bacterial QSM, e.g. the Pseu-
are only incompletely understood. Furthermore, the molecu- domonas aeruginosa QSM 3-oxo-C12-homoserine lactone
lar basis of farnesol signaling in C. albicans populations (3OC12HSL) (Pearson et  al. 1999), which is structurally
remains, despite intensive research in recent years, largely related to farnesol. While it remains unknown if such a
elusive. transport mechanism exists for farnesol in C. albicans, the
We recently discovered that deletion of C. albicans increased secretion of the QSM in a C. albicans eed1Δ
EED1, which is essential for hyphal maintenance (Zakikh- mutant could be explained by the existence and heightened
any et al. 2007; Martin et al. 2011), results in both farnesol activity of an active farnesol transport system (Nickerson
hypersensitivity and enhanced farnesol production (Polke and Atkin 2016). Extracellular farnesol levels in C. albi-
et al. 2016). Thus, we described the first C. albicans strain cans can exceed the intracellular concentrations (Navar-
hypersensitive to the QSM, and provided another link of athna et al. 2005; Polke et al. 2016), suggesting the exist-
farnesol signaling and hyphal maintenance regulation. ence of active farnesol exporters, as freely diffusible QSMs
While many questions about the eed1Δ phenotype remain, accumulate both intracellularly and in the extracellular
the mutant may be an attractive tool for future farnesol space (Bassler 2002). An active export may also explain
research, as pointed out in detail by Nickerson and Atkin why the farnesol tolerance of C. albicans is energy depend-
(2016). In this short review, we focus on the eed1Δ phe- ent (Langford et al. 2010), as decreased export may result
notype to speculate on some open questions regarding in a rapid intracellular accumulation of the QSM which
farnesol signaling in C. albicans by drawing comparisons could promote cell death induction due to disturbance of
to the comparably well-studied mechanisms in bacterial intracellular processes (Machida and Tanaka 1999; Shirtliff
communication. et  al. 2009a; Dichtl et  al. 2010; Zhu et  al. 2011; Leger
et al. 2015). Furthermore, increased farnesol export would
change the equilibrium between intra- and extracellular
Farnesol: the open questions on fungal quorum farnesol, and thereby stimulate increased farnesol produc-
sensing and lessons from bacteria tion (Navarathna et al. 2005; Langford et al. 2009; Nicker-
son and Atkin 2016).
In bacteria, QS systems often include multiple intersect- Increased farnesol secretion in eed1Δ does, however,
ing signaling pathways, which may act in parallel or in a not explain the heightened sensitivity of the C. albi-
hierarchical manner (Lee and Zhang 2015; Hawver et  al. cans eed1Δ mutant to farnesol. It appears possible that

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Curr Genet

the hypersensitivity to the QSM, which has not yet been farnesol hypersensitivity and increased farnesol produc-
described for any other C. albicans mutant, is a result of tion by eed1Δ (Polke et al. 2016). The hypothesis of a spe-
a decreased farnesol threshold, for example by increased cific farnesol receptor protein is furthermore supported by
expression of a farnesol receptor, as discussed by Nicker- the observation that eed1Δ is hypersensitive exclusively
son and Atkins (2016). In bacteria both, intracellular and to farnesol, but not 3OC12HSL: while the action of both
surface localized receptors for QSMs have been described molecules seems to be quite similar, as farnesol affects
(Cao and Meighen 1989; Bassler et  al. 1993; Lina et  al. virulence factor production in P. aeruginosa (Cugini et al.
1998; Swem et  al. 2008; LaSarre and Federle 2013; 2007, 2010; McAlester et al. 2008), and both molecules are
Hawver et  al. 2016), but a farnesol receptor in C. albi- able to inhibit morphogenesis in C. albicans (Hogan et al.
cans has not yet been identified. However, farnesol exerts 2004; Hall et al. 2011), the finding that eed1Δ is hypersen-
multiple effects in C. albicans, as it targets several factors sitive only to farnesol suggests that despite similar modes
involved in the regulation of morphogenesis, such as the of action, farnesol and 3OC12HSL may be differentially
adenylyl cyclase Cyr1 (Davis-Hanna et al. 2008; Hall et al. transported and/or sensed in C. albicans.
2011), and the small GTPase Ras1 (Piispanen et al. 2013). Assuming that the filament inhibitory action of farnesol
Further regulators involved in farnesol signaling are NRG1, is mediated via a specific sensor/receptor, while cell death
TUP1, CHK1 and CZF1, deletion of which reduces or is likely induced by rather unspecific farnesol effects (e.g.
abolishes the effects of farnesol on filamentation (Kruppa membrane disturbances, glutathione extrusion, etc. Bring-
et al. 2004; Kebaara et al. 2008; Langford et al. 2013), as mann et al. 2000; Scheper et al. 2008; Zhu et al. 2011), the
well as Efg1, Cek1 and Hog1 (Roman et al. 2009; Deveau increased expression of a farnesol receptor in eed1Δ would
et  al. 2010; Langford et  al. 2013). Farnesol may direct its also explain, why the mutant is solely sensitive to the fila-
multiple effects by binding to several targets, or via a com- ment inhibitory action, but not to cell death induction by
mon receptor which regulates different downstream targets. farnesol (Polke et al. 2016). Indeed it has been speculated
The observed eed1Δ phenotype could be explained if Eed1 that the various effects of farnesol require different molecu-
would negatively control the activity and/or stability of lar mechanisms (Nickerson et al. 2006).
such a sensor. Interestingly, the bacterial LuxR-type recep-
tor protein, a component of the LuxI-LuxR-type QS sys-
tem present in many Gram-negative bacteria (Fuqua et al. The role of quorum sensing during host–fungal
1994), has been shown to be regulated by binding of the interactions
QSM AHL itself: in the absence of its ligand only a small
percentage of LuxR receptors is stable, while the majority It has been suggested that quorum sensing in bacterial pop-
of the receptor molecules are rapidly degraded (Sappington ulations assures a delay in virulence factor expression until
et al. 2011; Hawver et al. 2016). In the presence of sufficient a certain population density is reached. This maximizes the
AHL levels, its binding to LuxR stabilizes the complex and probability to establish a successful infection. Assuming
structural rearrangements subsequently allow DNA bind- that this is the purpose of QS in C. albicans, why would
ing and induction of QS-mediated functions (Hawver et al. the fungus downregulate hypha-formation, one of its most
2016). In contrast, in the Bacillus subtilis Rap-Phr sys- important virulence traits (Kumamoto and Vinces 2005), at
tem the QS receptor Rap becomes inactivated by binding high cell densities? Is this simply a protective mechanism
of the QSM (Pollak et  al. 2015). Thus, it is intriguing to to reduce energy expenditure at high cell densities when
speculate that if a specific farnesol receptor exists, it may nutrients become limited? This is a plausible explanation
be partially stable without ligand binding, but prone to deg- in complex communities such as biofilms, where nutrients
radation when farnesol is not present in appropriate con- likely get limited once the population reaches a certain
centrations. Eed1 could be directly or indirectly involved in size (Ramage et  al. 2002). It is tempting to speculate that
directing this receptor for degradation, so that the receptor C. albicans may exploit the regulation of genes which have
would be stabilized in an eed1Δ mutant, and consequently been implicated in regulating filamentation and the sensi-
lower levels of farnesol may elicit a great response within tivity to farnesol, e.g. CZF1, NRG1 and EED1 (Kebaara
the cell in a more rapid fashion. In bacterial QS systems et  al. 2008; Langford et  al. 2013; Polke et  al. 2016), as a
it is furthermore common that QSM signaling also acti- self-regulatory mechanism to induce yeast budding from
vates the genes encoding the enzymes necessary for QSM filaments in mature biofilms to induce dispersal and seed-
production (Rutherford and Bassler 2012; Castillo-Juarez ing of new niches. Based on the eed1Δ mutant pheno-
et al. 2015). While this has not been described for farnesol type, down-regulation of EED1 could facilitate enhanced
signaling (Cao et  al. 2005; Enjalbert and Whiteway dispersal by increasing farnesol production and enhanc-
2005; Cho et  al. 2007), a positive feedback-loop between ing farnesol sensitivity, thereby promoting the transi-
farnesol signaling and production would explain both, the tion to yeast growth. Comparable mechanisms have been

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Curr Genet

described for bacterial pathogens: biofilm development of molecule is absorbed by surrounding host membranes,
Staphylococcus aureus is inhibited by the bacterial agr QS degraded by host enzymes, or sequestered/inactivated by
system. Therewith the QS system promotes both, virulence other microbes (Hogan 2006; Nickerson et  al. 2012). In
factor expression and dispersal of cells from the biofilm addition QS signaling in vivo will likely not only be shaped
at high cell densities by decreasing surface proteins and by the fungal QSMs secreted, but also by host molecules,
adhesins (Vuong et  al. 2000; Yarwood et  al. 2004; Boles environmental conditions and the presence or absence of
and Horswill 2008). It would not be surprising, if fungi other bacterial and fungal species, as it was described for
would have developed comparable systems to control their bacterial QS systems (Williams et  al. 2000; Waters and
dispersion and dissemination. Bassler 2005; Jensen et  al. 2006; Sarkisova et  al. 2014;
On the other hand, hyphal growth may not be abso- Jung et  al. 2015; Lee and Zhang 2015). For AHL mole-
lutely required for C. albicans under the conditions when cules from P. aeruginosa it was shown that while playing
a high cell density is reached, and/or the secretion of the an important role for virulence in in  vitro models, around
immunomodulatory farnesol may itself promote virulence 50% of clinical isolates from cystic fibrosis patient lungs
(Navarathna et al. 2007b; Abe et al. 2009; Leonhardt et al. were deficient for this QS system (Winstanley and Fother-
2015). Furthermore, C. albicans co-colonizes and infects gill 2009), implicating that QS systems may play different
host niches, which are occupied by a wide range of other roles in distinct in vivo settings. Comparable studies on C.
microbes. As described above, farnesol has strong antifun- albicans infections could provide information about the
gal and antibacterial activities against a range of different importance of fungal QS during infection in the host; how-
organisms (Machida and Tanaka 1999; Jabra-Rizk et  al. ever, such studies will not be possible until the mechanisms
2006; Langford et  al. 2009; Albuquerque and Casadevall underlying fungal QS are better explored and appropriate
2012), and, likewise, bacteria can inhibit C. albicans fila- tools have been developed.
mentation or induce cell death by producing small sign-
aling molecules or toxins (Morales et  al. 2010, 2013). In
many of the bacteria–Candida interactions studied, hyphae
Conclusion and future perspective
are specifically prone to bacterial attack (Hogan and Kolter
2002; Brand et al. 2008; Mear et al. 2013). Self-regulation
Despite recent insights into farnesol signaling in C. albi-
of hypha-formation at high densities may therefore be a
cans, the basic principles of the molecular interactions
protective mechanism exploited by C. albicans to cope
involved and the impact of farnesol on interaction with
with bacterial competitors, but also the host immune sys-
the host remain largely in the dark. We know from bac-
tem as yeast are generally better tolerated than hyphae
teria that QS can be very complex (Lee and Zhang 2015;
(White et  al. 2007; Moyes et  al. 2010; Pierce and Kuma-
Jung et  al. 2016), and that it not just promotes a specific
moto 2012).
behavioral adaptation depending on cell density, but also
An important point when discussing putative roles of
allows to integrate information about the presence of other
farnesol in the host is farnesol production by C. albicans
microbes. While QS inhibition methods have been explored
in  vivo: while bacterial QSMs have been readily detected
for various pathogenic bacteria (Niu et  al. 2006; Balaban
in patient samples (Geisenberger et  al. 2000; Singh et  al.
et al. 2007; Schramm et al. 2008; Sharma and Jangid 2014;
2000; Favre-Bonte et  al. 2002), it remains unknown, if
Castillo-Juarez et  al. 2015), the lack of knowledge on the
and to what amount farnesol is produced by C. albicans in
mechanisms behind fungal QS have hindered comparable
the host. The quantification of farnesol production by C.
approaches. We first have to understand fungal QS better
albicans in  vivo is complicated as the molecule is also a
before we can rationalize using QSMs or quorum quench-
common byproduct in cholesterol and isoprenoid synthesis
ing as therapeutic option in fungal infections (Hogan 2006;
in mammalian cells (Parmryd and Dallner 1996; Joo and
Nickerson et al. 2006; Scutera et al. 2014; Sharma and Jan-
Jetten 2010). Previous studies which aimed to analyze the
gid 2014; Yada et al. 2015).
influence of farnesol production in vivo used farnesol over-
producing C. albicans (Navarathna et al. 2005) or a dpp3Δ Acknowledgements  This work was financially supported by the
deletion strain (Navarathna et al. 2007a). Farnesol produc- Studienstiftung des deutschen Volkes e.V. (to MP) and the Deutsche
tion in  vivo was, however, not per se analyzed. Thus it is Forschungsgemeinschaft (DFG JA1960/1-1, to IDJ).
possible that farnesol production of C. albicans in the host
differs substantially from that measured during in  vitro
growth. Consequently, it remains unknown if the amounts
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