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The concept of docking was utilized to understand the interaction between COX
proteins and xanthones of Mangosteen. The molecular structures of ligands, α-Mangostin
(Figure-12A), β-Mangostin (Figure-12B) and γ-Mangostin (Figure-12C) were generated
and three-dimensionally optimized using ACD/ChemSketch software. Later the files
were converted into SDF or MOL2 format with the help of Mercury software for docking
analysis.
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Figure. 13. (A). The ribbon diagram shows the three-dimensional structure of chain A of
COX-1 (PDB_ID: 3N8V) and (B). Active site (green) predicted by CASTp.
Figure. 14. (A). The ribbon diagram shows the three-dimensional structure of chain A of
COX-2 (PDB_ID: 3NTG) and (B). Active site (green) predicted by CASTp.
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Among the three xanthones, α-Mangostin and β-Mangostin showed two hydrogen
bonds with same residues of COX-1 but differ in bond lengths. α-Mangostin showed two
hydrogen bond interactions of bond lengths 2.656A˚ and 1.817A˚ with Arg49 and Leu52
respectively (Figure-15A). β-Mangostin also showed two hydrogen bonds of bond
lengths 2.180A˚ and 1.806A˚ with Arg49 and Leu52 respectively (Figure-15B). But γ-
Mangostin exhibited a different pattern of interaction with COX-1, a single hydrogen
bond of length 2.488A˚ was observed with Val33 of COX-1 (Figure-15C). The atoms
involved in hydrogen bond interactions and the docking energies of Mangosteen ligands
with COX-1 were tabulated (Table-3).
On the other hand, α-Mangostin extended O11 and O13 of its oxygen atoms to
form two hydrogen bonds of length 2.019A˚ and 2.556A˚ with Ala18 of COX-2 (Figure-
16A). Similarly, β-Mangostin exhibited two hydrogen bonds but with Ser23 and Asp38
of COX-2. One bond was observed between Asp38 of COX-2 and H39 of β-Mangostin
with 1.894A˚ bond length; another bond was observed between Ser23 of COX-2 with
O20 of β-Mangostin (Figure-16B). As shown in Figure-4C, γ-Mangostin showed three
hydrogen bond interactions with Ala18, Cys22 and Asp38 of COX-2. The bonds are
between Asp38 of COX-2 and H37 of γ-Mangostin with a bond length of 1.980A˚. Other
interactions are with Cys22 and Ala18 of COX-2 with O21 and O22 of γ-Mangostin
respectively (Figure-16C). The atoms involved in hydrogen bonding, their bond lengths
and docking energies of all the three xanthone ligands were scored based on GOLD
fitness function for COX-2 and were tabulated (Table-4).
The docking results showed that all the three xanthone derivatives of Mangosteen
are active COX inhibitors with a significant preference to COX-2. Among the three
xanthones, based on the hydrogen bond interactions, number of hydrogen bonds and
GOLD docking score α-Mangostin was utilized for further experimental investigations.
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Figure. 15. Docking of xanthone ligands into the active site of COX-1 (PDB_ID: 3N8V)
using GOLD 3.0.1. Hydrogen bonds are shown as green dashed lines.
(A). α-Mangostin orientation (stick model) in COX-1 active site pocket,
(B). β-Mangostin orientation (stick model) in COX-1 active site pocket and
(C). γ-Mangostin orientation (stick model) in COX-1 active site pocket.
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Table. 3. Docking score and hydrogen bond interactions of Mangostin’s with COX-1
using GOLD 3.0.1.
Table. 4. Docking score and hydrogen bond interactions of Mangostin’s with COX-2
using GOLD 3.0.1.
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Figure. 16. Docking of xanthone ligands into the active site of COX-2 (PDB_ID: 3NTG)
using GOLD 3.0.1. Hydrogen bonds are shown as green dashed lines.
(A). α-Mangostin orientation (stick model) in COX-2 active pocket,
(B). β-Mangostin orientation (stick model) in COX-2 active pocket and
(C). γ-Mangostin orientation (stick model) in COX-2 active pocket.
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Figure. 17. (A). The ribbon diagram shows the three-dimensional structure of chain A of
COX-2 (PDB_ID:1CX2) and (B). Active site (green) predicted by CASTp.
Figure. 18. (A). The ribbon diagram shows the three-dimensional structure of chain B of
iNOS (PDB_ID:1NSI) and (B). Active site (green) predicted by CASTp.
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Among various binding poses in the active site, the best pose for both the ligands
and most stable conformation was selected based on docking energy. The α-Mangostin
with COX-2 (Table-7) showed a docking energy of -12.01kcal/mol which was two folds
greater compared to the docking energy -5.96kcal/mol of Indomethacin with COX-2.
The docking energies of α-Mangostin and Indomethacin with iNOS were found to
be -12.20kcal/mol and -2.75kcal/mol respectively (Table-8). However, the hydrogen
bonds were observed at different positions with different residues of iNOS. α-Mangostin
showed a single hydrogen bond of 2.012A˚ with Tyr489 (Figure-21A, Table-8) and
Indomethacin showed two hydrogen bonds of 2.076A˚ with Gln263 and 2.013A˚ with
Trp346 of iNOS (Figure-21B, Table-8).
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Figure. 20. Docking of ligands into the binding site of COX-2 (PDB_ID:1CX2) using
AutoDock 3.0. The important residues of the enzyme and the inhibitor are depicted by
stick model and Hydrogen bonds are shown as green lines.
(A) α-Mangostin with COX-2 (blue) and
(B) Indomethacin with COX-2 (violet).
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Table. 7. Docking energies and number of hydrogen bond interactions with bond lengths
of ligands docked against pro-inflammatory enzyme COX-2 using AutoDock 3.0.
Table. 8. Docking energies and number of hydrogen bond interactions with bond lengths
of ligands docked against pro-inflammatory enzyme iNOS using AutoDock 3.0.
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Figure. 21. Docking of ligands into the binding site of iNOS (PDB_ID:1NSI) using
AutoDock 3.0. The important residues of the enzyme and the inhibitor are depicted by
stick model and Hydrogen bonds are shown as green lines.
(A). α-Mangostin with iNOS (pink) and
(B). Indomethacin with iNOS (yellow).
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4.4. α-Mangostin docked into the active sites of mPGES-1 and NF-κB showed
significant binding efficiency.
The grid box was defined to enclose the active site residues namely Glu77,
Arg110, Tyr117 and Arg126 with dimensions of 54x66x40A˚. The α-Mangostin showed
a single hydrogen bond interaction with Arg180 of mPGES-1 (Figure-23). The docking
energy and bond length were tabulated (Table-9).
The grid box was defined to enclose the active site residues namely Lys218,
Lys221, Glu222, Arg246 and Gln247 with dimensions of 40x40x40A˚. The docking
results showed two hydrogen bond interactions between α-Mangostin and NF-κB with -
7.81kcal/mol docking energy (Figure-25). One bond was observed between Arg30 of NF-
κB and α-Mangostin with a bond length of 2.067A˚. The other bond was found between
Leu280 of NF-κB and α-Mangostin with a bond length of 2.010 A˚ (Table-10).
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Figure. 22. α-Mangostin (pink) in the active site pocket of mPGES-1 (PDB_ID:3DWW).
Figure. 23. Docking of α-Mangostin into the active site of mPGES-1 (PDB_ID:3DWW)
using AutoDock 3.0. The important residues of the enzyme and the inhibitor are depicted
by stick model and Hydrogen bonds are shown as green lines.
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Table. 9. Docking energies and number of hydrogen bond interactions with bond lengths
of α-Mangostin docked against mPGES-1 using AutoDock 3.0.
Table. 10. Docking score and hydrogen bond interactions of α-Mangostin with NF-κB
using AutoDock 3.0.
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Figure. 24. α-Mangostin (aqua) in the active site pocket of NF-κB (PDB_ID: 2O61).
Figure. 25. Docking of α-Mangostin into the active site of NF-κB (PDB_ID: 2O61) using
AutoDock 3.0. The important residues of the enzyme and the inhibitor are depicted by
stick model and Hydrogen bonds are shown as green lines.
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The oral doses of α-Mangostin up to 1500mg/kg did not produce any evident sign
of toxicity and mortality in rats when observed up to 14 days since administration. Thus,
the median lethal dose (LD50) was determined to be higher than the maximum
(1500mg/kg) dose tested.
In the present study, the acute inflammation in rats was experimentally induced
by carrageenan to determine the anti-inflammatory activity of α-Mangostin. After 1h of
oral treatment with α-Mangostin (0.5, 5 and 10mg/kg, b.w, p.o), Indomethacin (10mg/kg,
p.o) and normal saline (control), the acute inflammation was produced by subplantar
administration of % carrageenan in the left hind paw of rats. After 3h of carrageenan
injection the rat paw oedema volume was measured and the inhibition of paw oedema
was clearly observed in α-Mangostin (10mg/kg) treated group compared to control group
(Figure-26). α-Mangostin significantly (p<0.001) inhibited the carrageenan induced paw
oedema in dose dependent manner by restricting its volume to 0.883±0.012ml at 10mg/kg
compared to standard Indomethacin (10mg/kg) group (Table-11).
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The cotton pellets were removed surgically, freed of extraneous tissues and dried
for 24h at 60ºC. The dry weight of cotton pellets were taken as the measure of granuloma
formation. α-Mangostin significantly (p<0.001) reduced the formation of granuloma at
10mg/kg as the dry weight of cotton pellet was 23.3±0.15mg (Table-12) compared to
standard group. The maximum inhibition of 66.71% was observed at 10mg/kg of α-
Mangostin but Indomethacin showed 50.57% inhibition of granuloma formation at
10mg/kg (Figure-29). The α-Mangostin showed significant in vivo anti-inflammatory
activity both in acute and chronic phases of inflammation compared to Indomethacin.
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Figure. 26. The anti-inflammatory activity of α-Mangostin was evaluated in acute phase
of inflammation in rats. The acute inflammation was experimentally induced by
carrageenan showing paw oedema in control group (a) and inhibition of paw oedema in
10mg/kg b.w of α-Mangostin treated group (b) after 3h of induction.
Figure. 27. The inhibition of paw oedema by α-Mangostin was evaluated by carrageenan
induced acute inflammation in rats.
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All values are expressed as mean ± SEM of six individual observations and
*
p<0.001 when compared to control group.
All values are expressed as mean ± SEM of six individual observations and
*
p<0.001 when compared to control group.
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Figure. 29. The inhibition of cotton pellet induced granuloma by α-Mangostin was
evaluated by chronic inflammation in rats.
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The DPPH was widely used as a model system to investigate the scavenging
activities of natural compounds. DPPH radical is scavenged by antioxidants through the
donation of proton by forming the reduced DPPH. The color changes from purple to
yellow after reduction was quantified at 517nm. α-Mangostin at different concentrations
(62.5 to 1000µg/ml) was tested for the DPPH free radical scavenging ability. As shown in
Table-13, α-Mangostin showed 95% inhibition at 1000µg/ml and 40% inhibition at
62.5µg/ml concentration. The IC50 for DPPH scavenging was found to be at 100µg/ml of
α-Mangostin. This suggests that α-Mangostin has the proton-donating ability and could
serve as a free radical scavenger.
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Table. 13. DPPH scavenging activity of α-Mangostin and * represents results of triplicate
determinants.
α-Mangostin Percentage of
(µg/ml) inhibition*
62.5 40
125 64
250 68
500 70
1000 95
Table. 14. Scavenging effect of α-Mangostin on nitric oxide radical and * represents data
of triplicate determinants.
α-Mangostin Percentage of
(µg/ml) inhibition*
62.5 12
125 15
250 20
500 30
1000 49
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The scavenging activity towards the superoxide radical (O2-) was measured in
terms of inhibition of generation of O2- using alkaline dimethyl sulphoxide (DMSO)
method. In the present study, superoxide radical reduces nitroblue tetrazolium to a blue
colored formosan that was measured at 560nm. The result shows that α-Mangostin has a
potent scavenging activity with increasing percentage of inhibition i.e., 27% at 62.5µg/ml
and 89% at 1000µg/ml (Table-15). The IC50 was found to be at 250µg/ml of α-
Mangostin. The possible mechanism of scavenging superoxide anions by α-Mangostin
was may be due to its inhibitory effect towards generation of superoxides in the in vitro
reaction mixture.
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α-Mangostin Percentage of
(µg/ml) inhibition*
62.5 27
125 39
250 54
500 59
1000 89
α-Mangostin Percentage of
(µg/ml) inhibition*
62.5 12
125 19
250 26
500 32
1000 54
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To test the effect of α-Mangostin on the cell viability and apoptosis, a well
characterized human breast cancer cell line MDA-MB-231 was selected. MDA-MB-231
cells in DMEM medium were seeded in culture plates, kept overnight for attachment and
treated with different concentrations of α-Mangostin for desired time periods. The stock
solution of α-Mangostin was prepared in DMSO and diluted with DMEM to get desired
concentrations. The maximum concentration of DMSO was within permissible limits of
toxicity (≤0.1%). Appropriate concentration of DMSO used (0.1% v/v) was taken as
control in all the experiments.
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The dye exclusion test is used to determine the number of viable cells present in a
cell suspension. It is based on the principle that live cells possess intact cell membranes
that exclude certain dyes like trypan blue, whereas dead cells do not. In this test, the
MDA-MB-231 cells were incubated with different concentrations (1 to 20µM) of α-
Mangostin for 24h. The cell suspension was mixed with Trypan blue and loaded on to a
haemocytometer, then visually examined to determine whether cells take up or exclude
dye under microscope. The viable cells showed clear cytoplasm by excluding Trypan
blue and cells with blue cytoplasm were counted as non-viable. The percentage of viable
cell number was consistently decreased with increasing concentrations of α-Mangostin.
As shown in Figure-31 marginal decrease in the cell viability was observed up to 2.5µM
of α-Mangostin. The treatment with 10µM of α-Mangostin significantly decreased the
viability of MDA-MB-231 cells to 48.6% at 24h and to 2.4% with 20µM concentration of
α-Mangostin (Figure-31).
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Neutral red assay is one of the most widely used cytotoxicity tests with many
biomedical and environmental applications. Neutral red assay is based on the ability of
viable cells to incorporate and bind the supravital dye called Neutral red. It is a weak
cationic dye that readily penetrates cell membranes by non-ionic diffusion and
accumulates intracellularly in lysosomes. Alterations of the cell surface or the sensitive
lysosomal membrane lead to lysosomal fragility result in a decreased uptake and binding
of NR. It is thus possible to distinguish between viable, damaged, or dead cells by this
assay. In the present study MDA-MB-231 cells incubated with different concentrations (1
to 20µM) of α-Mangostin for 24h and stained with Neutral red. As shown in the Figure-
32, in the presence of α-Mangostin (5 to 20µM) less amount of Neutral red dye was bind
to cells. The MDA-MB-231 cells survival was 49.2% with 10µM and 4.7% with 20µM
of α-Mangostin (Figure-33).
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Figure. 33. The inhibition of MDA-MB-231 cells survival from 0.1% DMSO (C) to 1,
2.5, 5, 10, 15 and 20µM of α-Mangostin treatment determined by Neutral red assay after
24h. Each bar represents the results of triplicate determinants and * indicates significant
difference in comparison to control (p < 0.01).
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Figure. 35. The inhibition of MDA-MB-231 cells proliferation from 0.1% DMSO (C) to
1, 2.5, 5, 10, 15 and 20µM of α-Mangostin treatment determined by MTT assay after 24h.
Each bar represents the data from triplicate determinants and * indicates significant
difference in comparison to control (p < 0.01).
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To assess the DNA damage caused by α-Mangostin, comet assay was performed
in MDA-MB-231 cells. As shown in Figure-37, comet tails of damaged DNA were
observed in the presence of α-Mangostin.
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Figure. 37. Comet assay of α-Mangostin treated MDA-MB-231 cells showing detectable
comet tails, indicative of DNA damage. From ‘a’ to ‘f’ are 0.1% DMSO treated control
cells to 2.5, 5, 10, 15 and 20µM of α-Mangostin treated cells.
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Figure. 39. Flow cytometric analysis was performed to determine the apoptotic effect of
α-Mangostin on MDA-MB-231 cells. The cells were exposued to α-Mangostin (10µM)
and 0.1% DMSO for 24h. Then cells were harvested, fixed and stained with propidium
iodide, and the DNA content was analyzed by Flow cytometry. The DNA histogram of
(A) Control cells (0.1% DMSO) and (B) 10µM α-Mangostin treated cells after 24h.
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4.8. Effect of α-Mangostin on the expression of COX-2 and iNOS genes in LPS
stimulated MDA-MB-231 cells:
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Figure. 43. The effect of α-Mangostin on the expression of COX-2 and iNOS genes in
LPS stimulated MDA-MB-231 cells determined by RT-PCR. Cells were pre-treated with
the different concentrations (2.5 to 20µM) of α-Mangostin and with 0.1% DMSO (C).
Then stimulated with LPS (1µg/ml) for 2h and 12h for the expression of COX-2 and
iNOS respectively and total RNA from MDA-MB-231 cells was used as a template for
cDNA synthesis and then subjected to PCR. The amplified PCR products were
electrophoresed on 1.5% agarose gels and visualized by ethidium bromide staining. The
cDNA of COX-2 (305bp) and iNOS (370bp) were detected and found that the expression
levels were decreased with increasing concentrations of α-Mangostin. The GAPDH was
used as the loading control. Data shown are representative expression patterns from
triplicate independents.
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As per the results presented in Figure- 44A, no change in COX-1 protein levels
was observed whereas α-Mangostin at 10-20µM showed remarked changes in COX-2
protein levels. GAPDH was used as loading control and the concentration-dependent
inhibition of COX-2 protein expression was observed at 10-20µM of α-Mangostin
compared to GAPDH expression (Figure- 44A, B).
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Figure. 44. (A) The effect of α-Mangostin on the expression of COX-1 and COX-2
proteins in LPS stimulated MDA-MB-231 cells assessed by Western blotting. After pre-
treatment with the indicated concentrations of α-Mangostin and with 0.1% DMSO (C),
cells were stimulated with LPS (1µg/ml) for 2h. Equal loading was confirmed by
stripping the blot and reprobing it for GAPDH. Data shown are representative expression
patterns from triplicate independents.
(B) The densitometric data of COX-2 protein expression representing the relative density
of the Western blot bands normalized to GAPDH.
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culture supernatant. As shown in Figure- 45, the levels of nitrite concentration reduced
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Figure. 45. The nitrite concentration in LPS stimulated MDA-MB-231 cells was
measured by Griess assay. The cells were pre-treated with different concentrations (2.5,
5, 10, 15 and 20µM) of α-Mangostin and with 0.1% DMSO (C), then stimulated with
LPS (1µg/ml) for 12h. The nitrite levels were expressed as mean ± SEM from triplicate
determinants.
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The iNOS protein expression in LPS stimulated MDA-MB-231 cells was assessed
by Western blot analysis. The analysis was carried with whole cell lysate from cells pre-
treated with different concentrations (2.5 to 20µM) of α-Mangostin and with 0.1%
DMSO (Control), stimulated with LPS (1µg/ml) for 12h for iNOS expression. The results
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Figure. 46. (A) The effect of α-Mangostin on the expression of iNOS in LPS stimulated
MDA-MB-231 cells assessed by Western blotting. After pre-treatment with the indicated
concentrations of α-Mangostin and with 0.1% DMSO (C), cells were stimulated with
LPS (1µg/ml) for 12h. Equal loading was confirmed by stripping the blot and reprobing it
for GAPDH. Data shown are representative expression patterns from triplicate
independents.
(B) The densitometric data of iNOS protein expression representing the relative density
of the Western blot bands normalized to GAPDH.
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