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Ectocarpus siliculosus virus, EsV, multiplies in sporangia and gametangiaof tl~e marine brown alga Ectocarpus siliculosus.
We describe an improved method for the isolation of morphologicallyintact and infectious virus from diseased plants• We
show that treatment of virus particles with high concentrations of CsCl results in a substantial loss of structural proteins.
One of the proteins which resists CsCl treatment is glycoprotein-1,the largest of the three viral glycoproteins. We have
isolated an EsV genomic fragment with an open reading frame encoding glycoprotein-1.The predicted amino acid sequence
is rich in hydrophilic amino acids, but contains hydrophobic regions close to the amino and carboxy termini• A discrepancy
between the molecularweight predicted from the coding region and the molecularweight determined by gel electrophoresis
suggests that proteolytic processing is required for the maturation of the protein. © 1995AcademicPress,Inc.
Electron microscopy
Isolated virus particles were mounted on carbon-
coated grids which had been exposed to glow discharge
of tripropylamine vapor (Dubochet and Groom, 1982). The
grids were then treated with uranyl acetate (Hasche-
meyer, 1970). Micrographs were taken in a Zeiss EM 900 FIG. 1. Morphologyof isolated EsV.The multilayered structure corre-
electron microscope. sponds to that previously described for densely packed intracellular
virus particles (see MOileretaL, 1990;Lanka etaL, 1993).Bar, 0.1 #m.
Molecular cloning
We have .restricted EsV DNA with the endonucleases gels in the presence of sodium dodecyl sulfate (SDS)
EcoRI and Sail. The resulting fragments were cloned into (Laemmli, 1974). The separated polypeptides were visu-
plasmid vector pUC 9. Several of the cloned virus DNA alized by silver staining (Wray et al., 1981) or transferred
fragments were sequenced by the chain termination to a nylon membrane for the staining of glycoproteins
method of Sanger et al. (1977). A 0.93-kb fragment con- (Gershoni et aL, 1985) or for immunostaining (Western
tained an open reading frame, and computer analysis blotting; Towbin et aL, 1979). Immunostaining of mem-
revealed some limited degree of similarity to known viral brane-bound proteins was performed with rabbit anti-
coat proteins (see below). The 0.93-kb fragment was bodies specific for the bacterially expressed EsV coat
used as a probe to isolate a 2.3-kb BamHI fragment from Protein.
an EsV genomic library (see below). Part of this DNA
fragment was subctoned in plasmid pRSET (Invitrogen/ RESULTS
ITC Biotechnology) and induced for expression after
transfection into bacteria as suggested by the supplier. Isolation of infective virus particles
The overexpressed protein was purified from bacterial
Previously, we purified PEG-precipitated virus parti-
extracts and used to immunize rabbits (Harlow and Lane,
cles by CsCI gradient centrifugation (Lanka et al., 1993).
1988).
These virus preparations were not infectious in contrast
For preparation of a genomic library, the EsV genome
to native virus particles released from infected plants
was partially digested with the restriction endonuclease
(M011er et al., 1990). We concluded that viral particles
Sau3A, and DNA fragments of 9-23 kb were cloned in
were damaged by the high ionic strength of CsCI solu-
the BamHI sites of vector X-GEM12 (Promega) according
tions and consequently tried Percoll gradients as an al-
to standard procedures (Sambrook et al., 1989).
ternative final purification step. Indeed, electron micro-
scopio examination revealed that EsV particles recov-
Protein analysis
ered after the Percoll step were morphologically similar
Virus particles, obtained after Percoll centrifugation, (Fig. 1) to the viral structures seen in EM sections of
were pelleted at 80,000 g and resuspended in loading plant cells (M011er et aL, 1990; Lanka et aL, 1993).
buffer. Proteins were electrophoresed on polyacrylamide We have performed infection experiments to test
522 KLEIN ET AL.
Purification of Sill fragment of the EsV genome (Lanka etaL, 1993) and
EsV particles
is included in a 13.7-kb fragment of an EsV genomic
1 2 library constructed in the lambda-derived vector X-
GEM12. These findings allow a tentative assignment of
the 2.3-kb fragment to the EsV genome as shown in
Fig. 3.
The 2.3-kb fragment does not hybridize to DNA from
uninfected E. siliculosus cells or to DNA from a virus
infectious for the marine brown alga Feldmannia (Henry
and Meints, 1992; Friess-Klebl et aL, 1994; data not
shown).
The fragment contains an open reading frame of 1983
bases. The region (50 bp) upstream of the initiation codon
is rich in AT base pairs (not shown) with an AT content
FIG. 2. Structural proteins of EsV purified by centrifugation in a CsCI of 63% compared to 50% in the open reading frame. Inter-
gradient (1) and in a Percoll gradient (2). About 5 #g protein each was estingly, AT- rich upstream regions were also found in
electrophoresed on a 12% polyacrylamide gel and visualized by silver genes from Chlorella viruses and may have a function in
staining. gene expression (Schuster et al., 1990; Graves and
Meints, 1992).
whether Percoll-purified EsV retains its biological activity. In Fig. 4A, we show the amino acid sequence deduced
As a recipient we used symptom-free parthenosporo- from the open reading frame of the 2.3-kb EsV DNA frag-
phytes with mature plurilocular sporangia. These plants ment. The amino acid sequence corresponds to a poly-
were induced to release their spores by transfer to fresh peptide with a calculated molecular weight of about 72
culture medium and a temperature increase from 4 to kDa. The sequence includes four amino acid motifs fre-
18° (MOiler, 1991a). Aliquots of 200-300 free-swimming quently found at sites modified by N-glycosylation (boxed
spores were dispensed into 0.5 ml medium in 5-cm plas- in Fig. 4A)(Hart et aL, 1979). The predicted polypeptide
tic dishes. Aliquots of the EsV preparation were then is rich in hydrophilic amino acids with a calculated p/of
added and gently stirred. After 1 hr the zoids had settled 4.2, but there are two hydrophobic domains close to the
atthe bottom of the plastic dishes. Fresh medium (10 mI)
was then added to each dish and incubation continued at
18° for 2 weeks. Depending on the amounts of virus Sfi I
added, between 10 and 35% of the developing plants Asc ~ Sfl I
showed the symptoms characteristic for virus infection
(M011er et aL, 1990). Mock infection experiments with
parallel cultures never produced pathological symptoms.
These experiments fulfill Koch's postulates= the infec-
tious agent was isolated from a diseased organism and
used to infect a healthy recipient which thereafter devel-
Asc I ~ Sfi I
oped the same symptoms originally observed in the field jJ ~.
sample.
f ~
Infection experiments with CsOl-treated virus prepara- f ~
tions were always negative, and one reason for this could
be a loss of structural proteins during CsCI gradient cen-
trifugation. Gel electrophoretic analyses revealed quali- B BEH E B B Sac ~.MKIO
I/I I I,I I 13,7 kb
tative differences between the two virus preparations. As
shown in Fig. 2, polypeptides of about 35 and 21 kDa /i ", •,,," 11 kb|
o/,
. / o°°
aminoterminal end and the carboxyterminal end of the kD~ kDa
polypeptide (Fig. 4B). Application of the rules of Chou
and Fassman (1978) predicts a high content of f l strands 94 -- 94
as a major secondary structure element for the entire
67
amino acid sequence (not shown).
Computer-assisted sequence comparisons revealed 43 1
- 4a
that the extreme hydrophobic amino terminal section (ho- .... :,i
mology region 1 in Fig. 4C) of the predicted sequence 3O
has a limited similarity (29% identities in 24 amino acids) ii :r i
- 3O
with the flavivirus encoded glycoprotein NS1 that is found 1 2
on the surface of flavivirus-infected cells (Hahn et aL,
1988). The sequence of hydrophobic amino acids, in- 3 4
cluded in homology region 2 of Fig. 40, is similar (39%
identity in 23 amino acids) to a hydrophobic aminotermi- FIG, 5. Bacterial expression of the EsV gpl-sequence. (Left) The
open reading frame between the Hindlll and BamHI restriction sites
nal part of an envelope protein of hepatitis C virus (Ta- as shown at the bottom of Fig. 3 was linked to the multiple cloning
kamizawa et al., 1991), and the more centrally located site of expression vector pRSET. We show a silver-stainedpoiyacryl-
stretch of amino acids 140 to 230 (homology region 3, amide gel (8%) with equal amounts of proteins from uninduced and
Fig. 4C) shares 20 of 90 amino acids with an external induced bacteria. (Right) The bacterially expressed EsV-protein was
part of a mammalian membrane-associated surface gly- used as an antigento raise antibodies in rabbits. Proteinsfrom induced
bacteria were electrophoreticallyseparated on polyacrylamide gels
coprotein (Br0mmendorf et al., 1989). Finally, computer (10%), blotted onto nylon membranes, and probed with EsV-protein
analysis indicates that the extreme carboxyterminal hy- antibodies or with preimmunecontrol antibodies as indicated (Towbin
drophobic region (Fig. 4B) of the predicted amino acid et al., 1979).
524 KLEIN ET A L
stead Percoll-centrifugation as the final purification step. (Graves and Meints, 1992) but the implications for gene
The improved method yields viral particles with higher expression and regulation have yet to be worked out.
protein/DNA ratios than those of CsOl-purified viruses. It From a more practical point, the known sequence of
appears therefore that high CsCI concentrations disrupt a piece of the EsV genome offers the opportunity to use
the viral protein shell. We found that treatment with CsCI PCR assays, which will be of great value in investigating
interferes with the biological activity of EsV. the distribution of EsV in algal populations from natural
Percoll-purified viruses are composed of at least 16 habitats and in obtaining important new information con-
electrophoretically detectable structural proteins. Some cerning the ecological consequences of EsV induction
of these proteins are rather intensely stained by silver and infection.
salts and are therefore present in many copies per parti-
cle (Figs. 2, 6). These abundant proteins are most likely ACKNOWLEDGMENTS
the major building blocks forming the characteristic two- We thank Uwe Ramsperger for his help with electron microscopy
layered shell of densely packed virus particles in the and Martin Br~utigam for discussions. This work was supported by
infected cell (MOiler et aL, 1990) and of isolated infective Deutsche Forsohu nsgemeinschaft.
viruses. But we have no information yet concerning the
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