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VIROLOGY206, 520-526 (1995)

Coat Protein of the Ectocarpus siliculosus Virus

MICHAEL KLEIN, STEFAN T. J. LANKA, ROLF KNIPPERS, 1 AND DIETER G. M@LLER

Division of Biology, Universit~t Konstanz, D 78434 Konstanz, Federal Republic of Germany


Received June 24, 1994;accepted October 31, 1994

Ectocarpus siliculosus virus, EsV, multiplies in sporangia and gametangiaof tl~e marine brown alga Ectocarpus siliculosus.
We describe an improved method for the isolation of morphologicallyintact and infectious virus from diseased plants• We
show that treatment of virus particles with high concentrations of CsCl results in a substantial loss of structural proteins.
One of the proteins which resists CsCl treatment is glycoprotein-1,the largest of the three viral glycoproteins. We have
isolated an EsV genomic fragment with an open reading frame encoding glycoprotein-1.The predicted amino acid sequence
is rich in hydrophilic amino acids, but contains hydrophobic regions close to the amino and carboxy termini• A discrepancy
between the molecularweight predicted from the coding region and the molecularweight determined by gel electrophoresis
suggests that proteolytic processing is required for the maturation of the protein. © 1995AcademicPress,Inc.

INTRODUCTION stranded DNA of 320 kb which is isolated in linear and


circular forms (Lanka et aL, 1993). Our isolation proce-
Ectocarpus sificu/osus is a cosmopolitan benthic fila-
dure involved a precipitation of virus particles from dis-
mentous marine brown alga. it inhabits coasts in temper-
rupted infected plants by polyethylene glycol followed by
ate climate zones of both hemispheres. Representative
equilibrium centrifugation in CsCI gradients. EsV parti-
plants from many localities carry symptoms of an infec-
cles, purified by this procedure, were not infectious (in
tion caused by a latent virus, the Ectocarpus silicu/osus
contrast to virus particles spontaneously released from
Virus, EsV (MOiler et aL, 1990; MOiler and Stache, 1992).
infected cells into seawater; MOWer et aL, 1990). They
Induction and multiplication of EsV occurs in the repro-
also differ in their electron microscopic appearance from
ductive organs of the host. EsV genomes replicate and
those seen in infected plant ceils (Lanka et al., 1993).
assemble as closely packed viral particles in prospective
In the present communication, we describe an im-
gametangia and sporangia and are eventually dis-
proved isolation procedure replacing the CsCI step with
charged into the surrounding seawater (MOiler, 1991a).
Percoll gradient centrifugation. This procedure yields
Free virus particles are infective for a few days (MOWer
morphologically intact EsV particles that readily infect
and Frenzer, 1993) and can invade swimming gametes
unicellular zoospores which then deyelop into mature
or spores of healthy plants, but cannot infect somatic
plants showing pathological symptoms. As one explana-
Ectocarpus cells which are protected by their solid cell
tion for the lack of infectivity of CsCI-purified EsV we
wall (MOiler et aL, 1990). Infected gametes or spores
found that CsCI induces the dissociation of several viral
develop into infected plants, implying that all cells of the
coat proteins. We have determined properties of one coat
progeny plant carry the virus genome, but permit virus
protein, glycoprotein 1, as a first step for investigating
induction and multiplication only in the prospective repro-
the complex architecture of EsV.
ductive cells. In genetic crosses between healthy and
infected gametophytes, the EsV genome is transmitted
like a Mendelian trait as meioses produce equal num- MATERIALS AND METHODS
bers of healthy and infected spores (MOWer, 1991b).
Thus, EsV in its natural environment remains infectious Cells
for short time periods, easily invades the host via its
Stocks of clonal sporophyte cultures of E. siliculosus
gametes or spores, and can be eliminated by meiosis.
were maintained bacteria-free on 1% agar in culture me-
These are features of a nonlethal, well balanced host-
dium (autoclaved seawater with ES enrichment ac-
pathogen system with interesting evolutionary and eco-
cording to Starr and Zeikus, 1993). Mass cultures were
iogica! implications.
initiated by inoculation of agar-grown fragments into liq-
Previously, we isolated EsV particles from infected
uid medium in Petri dishes which were later expanded
plants and found that the viral genome is double-
to 0.5-liter cultures. Conditions for cultivation were as
previously described (Lanka et aL, 1993).
~To whom reprint requests should be addressed. The virus-free strain is a female parthenosporophyte

0042-6822/96 $6.00 520


Copyright © 1995 by Academic Press, inc.
All rights of reproduction in any form reserved.
COAT PROTEIN OF Ectocarpus silicufosus 521

derived from a native New Zealand gametophyte (code


number NZ 4a3 f).
For virus production we used the previously described
E. siliculosus clone NZ-Vic-Z14 which develops symp-
toms of viral infection when transferred from agar to liq-
uid medium (Lanka eta/., 1993).

Preparation of virus particles


Virus particles were isolated from infected plants and
collected by precipitation in polyethyle0e glycol (PEG) as
previously described (Lanka eta/., 1993). The PEG pellet
was resuspended in 0.5 ml seawater/0.05 M Tris-HCI
(pH 7.8) and mixed with a Percoll solution (Sigma) to give
a final concentration of 80% Percoll (in seawater/0.05
M Tris-HCI, pH 7.8). The solution was centrifuged to
equilibrium for 1 hr at 65,000 g and 4° in a fixed-angle
rotor. The turbid virus band was collected by puncturing
the tube with a hypodermic needle.

Electron microscopy
Isolated virus particles were mounted on carbon-
coated grids which had been exposed to glow discharge
of tripropylamine vapor (Dubochet and Groom, 1982). The
grids were then treated with uranyl acetate (Hasche-
meyer, 1970). Micrographs were taken in a Zeiss EM 900 FIG. 1. Morphologyof isolated EsV.The multilayered structure corre-
electron microscope. sponds to that previously described for densely packed intracellular
virus particles (see MOileretaL, 1990;Lanka etaL, 1993).Bar, 0.1 #m.
Molecular cloning
We have .restricted EsV DNA with the endonucleases gels in the presence of sodium dodecyl sulfate (SDS)
EcoRI and Sail. The resulting fragments were cloned into (Laemmli, 1974). The separated polypeptides were visu-
plasmid vector pUC 9. Several of the cloned virus DNA alized by silver staining (Wray et al., 1981) or transferred
fragments were sequenced by the chain termination to a nylon membrane for the staining of glycoproteins
method of Sanger et al. (1977). A 0.93-kb fragment con- (Gershoni et aL, 1985) or for immunostaining (Western
tained an open reading frame, and computer analysis blotting; Towbin et aL, 1979). Immunostaining of mem-
revealed some limited degree of similarity to known viral brane-bound proteins was performed with rabbit anti-
coat proteins (see below). The 0.93-kb fragment was bodies specific for the bacterially expressed EsV coat
used as a probe to isolate a 2.3-kb BamHI fragment from Protein.
an EsV genomic library (see below). Part of this DNA
fragment was subctoned in plasmid pRSET (Invitrogen/ RESULTS
ITC Biotechnology) and induced for expression after
transfection into bacteria as suggested by the supplier. Isolation of infective virus particles
The overexpressed protein was purified from bacterial
Previously, we purified PEG-precipitated virus parti-
extracts and used to immunize rabbits (Harlow and Lane,
cles by CsCI gradient centrifugation (Lanka et al., 1993).
1988).
These virus preparations were not infectious in contrast
For preparation of a genomic library, the EsV genome
to native virus particles released from infected plants
was partially digested with the restriction endonuclease
(M011er et al., 1990). We concluded that viral particles
Sau3A, and DNA fragments of 9-23 kb were cloned in
were damaged by the high ionic strength of CsCI solu-
the BamHI sites of vector X-GEM12 (Promega) according
tions and consequently tried Percoll gradients as an al-
to standard procedures (Sambrook et al., 1989).
ternative final purification step. Indeed, electron micro-
scopio examination revealed that EsV particles recov-
Protein analysis
ered after the Percoll step were morphologically similar
Virus particles, obtained after Percoll centrifugation, (Fig. 1) to the viral structures seen in EM sections of
were pelleted at 80,000 g and resuspended in loading plant cells (M011er et aL, 1990; Lanka et aL, 1993).
buffer. Proteins were electrophoresed on polyacrylamide We have performed infection experiments to test
522 KLEIN ET AL.

Purification of Sill fragment of the EsV genome (Lanka etaL, 1993) and
EsV particles
is included in a 13.7-kb fragment of an EsV genomic
1 2 library constructed in the lambda-derived vector X-
GEM12. These findings allow a tentative assignment of
the 2.3-kb fragment to the EsV genome as shown in
Fig. 3.
The 2.3-kb fragment does not hybridize to DNA from
uninfected E. siliculosus cells or to DNA from a virus
infectious for the marine brown alga Feldmannia (Henry
and Meints, 1992; Friess-Klebl et aL, 1994; data not
shown).
The fragment contains an open reading frame of 1983
bases. The region (50 bp) upstream of the initiation codon
is rich in AT base pairs (not shown) with an AT content
FIG. 2. Structural proteins of EsV purified by centrifugation in a CsCI of 63% compared to 50% in the open reading frame. Inter-
gradient (1) and in a Percoll gradient (2). About 5 #g protein each was estingly, AT- rich upstream regions were also found in
electrophoresed on a 12% polyacrylamide gel and visualized by silver genes from Chlorella viruses and may have a function in
staining. gene expression (Schuster et al., 1990; Graves and
Meints, 1992).
whether Percoll-purified EsV retains its biological activity. In Fig. 4A, we show the amino acid sequence deduced
As a recipient we used symptom-free parthenosporo- from the open reading frame of the 2.3-kb EsV DNA frag-
phytes with mature plurilocular sporangia. These plants ment. The amino acid sequence corresponds to a poly-
were induced to release their spores by transfer to fresh peptide with a calculated molecular weight of about 72
culture medium and a temperature increase from 4 to kDa. The sequence includes four amino acid motifs fre-
18° (MOiler, 1991a). Aliquots of 200-300 free-swimming quently found at sites modified by N-glycosylation (boxed
spores were dispensed into 0.5 ml medium in 5-cm plas- in Fig. 4A)(Hart et aL, 1979). The predicted polypeptide
tic dishes. Aliquots of the EsV preparation were then is rich in hydrophilic amino acids with a calculated p/of
added and gently stirred. After 1 hr the zoids had settled 4.2, but there are two hydrophobic domains close to the
atthe bottom of the plastic dishes. Fresh medium (10 mI)
was then added to each dish and incubation continued at
18° for 2 weeks. Depending on the amounts of virus Sfi I
added, between 10 and 35% of the developing plants Asc ~ Sfl I
showed the symptoms characteristic for virus infection
(M011er et aL, 1990). Mock infection experiments with
parallel cultures never produced pathological symptoms.
These experiments fulfill Koch's postulates= the infec-
tious agent was isolated from a diseased organism and
used to infect a healthy recipient which thereafter devel-
Asc I ~ Sfi I
oped the same symptoms originally observed in the field jJ ~.
sample.
f ~
Infection experiments with CsOl-treated virus prepara- f ~

tions were always negative, and one reason for this could
be a loss of structural proteins during CsCI gradient cen-
trifugation. Gel electrophoretic analyses revealed quali- B BEH E B B Sac ~.MKIO
I/I I I,I I 13,7 kb
tative differences between the two virus preparations. As
shown in Fig. 2, polypeptides of about 35 and 21 kDa /i ", •,,," 11 kb|

molecular weight are the most prominent protein constit- I \",.


I ""
uents of Percoll-purified EsV, but they are far less abun- / \.
dant in CsOl-treated virus preparations. In addition, CsCI- B EH E B
I | I I
purified preparations almost entirely lack several poly-
peptides of molecular weight larger than 70 kDa (Fig. 2).
ORF EsV-gpl (1983 bp)
We initiated an analysis of the EsV coat and investi-
gated some properties of a major viral structural protein. FIG. 3. Mapping of the EsV-gpl gene. (Top) Restriction map of the
The EsV glycoprotein-1 EsV genome (Lanka eta/., 1993).(Bottom) Insert of phage clone X MK10
(restriction sites, B, BamHI; E, EcoRI; H, Hindlll) containing an open
We have cloned and sequenced a 2.3-kb piece of EsV reading frame (ORF)of 1983 bp encoding the EsV glycoprotein-1 (gpl).
DNA. This DNA segment hybridizes with the 65-kb Ascl/ Arrow, direction of transcription.
COAT PROTEIN OF Ectocarpus silicu/osus 523

A sequence is similar to the transmembrane domains of a


MVLRIPFRAW GKLSFACIVQ N K I L L E Y ~ S L G T V F F ~ TCGFSAYSGV QS~PEPIPKPV 60 number of membrane-associated proteins as diverse as
CDASKEISVR YSSTSQRIYL ESVDGSRGGC ASPTMVYEAL GDASPLFPLE TSGEWMLTET 120 apoprotein p680 of photosystem II from different plants
LHILDGITLN LYGTDVGGDV DYIKLRSDSE MTVSIRAHGG SLDLLNTKVT SWDSSKGDVD 180 (33% identity in an 18-amino-acid sequence) (Offermann-
TDWSDGRSFL SAISEVVLDA SETCVGSAKN DMGEARMDIE NCEIAFLGYE EAESWGISWK 240 Steinhard and Herrmann, 1990) and neural cell adhesion
LRGVCNDKSN LDMYEGVGVY GNLLGSDVHD LYYGHYGYRQ SFALLSRNSV YNNEVYGFDP 300
glycoproteins (36% identity in 33 amino acids) (Miura et
HDDS~IS HNDVYSNFNH GVIWSKYCHN AVVTNNHVHD NGGVGIFAHF VSDNAYISHN 360
al., 1991).
TIENNGDSGI AFLESSGGLV ~ R E N V H GIRFSVGSRQ NVVAENTFEE NTGYDLYQYA 420
Even though the similarities to other viral and cellular
GNDQVVEVDD ~ N V I Y A NLFSGNVGGA RLDDSTDTQL IFNSVEDWAS FEMVDSTNTL 480
membrane proteins are limited, they could indicate that
VQGNIFPADM IYTSSGSCIN SASDVFFGEV CTNAAIDPYD QSDYHTYHTT NDPDTVAVEA 540
TPDPQTHAPT ASPSASAFTT RPTFQPSAST FTASPTTIIK SGTESSYRSR GANEKDGDDY 600
the open reading frame of Fig. 4A may encode an EsV
YDEFETMSPT PIDARGIVVD DDRNAQDLTS GTSSSSSPRS RSNGAVGWFG FVAVVGVLLL 660 coat protein. We therefore expressed the major part of
661 the open reading frame (the H i n d l l I - B a m H I subfragment
of Fig. 3) in bacteria and used the bacterially expressed
and purified polypeptide as an antigen to raise antibod-
ies in rabbits.
The specificity of the antibodies was tested with ex-
2
tracts from bacteria expressing the EsV sequence. The
EsV antibodies but not preimmune antibodies specifi-
cally reacted in Western blots with a polypeptide ex-
100 200 300 400 500 600 pressed in bacteria induced to synthesize the EsV open
reading frame (Fig. 5). The apparent molecular weight
C of the immunoreactive polypeptide is close to 100 kDa,
661aa significantly higher than the molecular weight as calcu-
NH2, COOH
lated from the predicted amino acid sequence. This dis-
1 2 3 4
crepancy may be due to high local concentrations of
homology regions negatively charged amino acids (see Fig. 4B) which could
prevent the binding of sufficient amounts of sodium dode-
FIG. 4. Predicted amino acid sequence of EsV glycoprotein-1. (A)
Amino acid sequence. Underlined regions are rich in hydrophobic cyl sulfate (Matagne et al., 1991).
(straight line) or hydrophilic (broken line) amino acids. Potential N- We have directly determined the presence of the pro-
linked glycosylationsites are boxed. (B) Hydrophilicityplot. (C) Regions
with limited similarities to known viral and cellular proteins (see text).
The EsV nucleotide sequence has been depositedwith the EMBL data Expression EsV-gpl
of EsV-gpl
library under Accession No. X76296. [ ~ i

o/,
. / o°°
aminoterminal end and the carboxyterminal end of the kD~ kDa
polypeptide (Fig. 4B). Application of the rules of Chou
and Fassman (1978) predicts a high content of f l strands 94 -- 94
as a major secondary structure element for the entire
67
amino acid sequence (not shown).
Computer-assisted sequence comparisons revealed 43 1
- 4a
that the extreme hydrophobic amino terminal section (ho- .... :,i
mology region 1 in Fig. 4C) of the predicted sequence 3O
has a limited similarity (29% identities in 24 amino acids) ii :r i
- 3O
with the flavivirus encoded glycoprotein NS1 that is found 1 2
on the surface of flavivirus-infected cells (Hahn et aL,
1988). The sequence of hydrophobic amino acids, in- 3 4
cluded in homology region 2 of Fig. 40, is similar (39%
identity in 23 amino acids) to a hydrophobic aminotermi- FIG, 5. Bacterial expression of the EsV gpl-sequence. (Left) The
open reading frame between the Hindlll and BamHI restriction sites
nal part of an envelope protein of hepatitis C virus (Ta- as shown at the bottom of Fig. 3 was linked to the multiple cloning
kamizawa et al., 1991), and the more centrally located site of expression vector pRSET. We show a silver-stainedpoiyacryl-
stretch of amino acids 140 to 230 (homology region 3, amide gel (8%) with equal amounts of proteins from uninduced and
Fig. 4C) shares 20 of 90 amino acids with an external induced bacteria. (Right) The bacterially expressed EsV-protein was
part of a mammalian membrane-associated surface gly- used as an antigento raise antibodies in rabbits. Proteinsfrom induced
bacteria were electrophoreticallyseparated on polyacrylamide gels
coprotein (Br0mmendorf et al., 1989). Finally, computer (10%), blotted onto nylon membranes, and probed with EsV-protein
analysis indicates that the extreme carboxyterminal hy- antibodies or with preimmunecontrol antibodies as indicated (Towbin
drophobic region (Fig. 4B) of the predicted amino acid et al., 1979).
524 KLEIN ET A L

E s V particles reading frame. Presently, we cannot explain this differ-


1 ence, but processing of a precursor translation product
may be a realistic possibility (KrSusslich and Wimmer,
.,,,, 1988). In fact, we could identify in the aminoterminal part
kDa ~ ................ of the predicted gpl sequence a signal sequence cleav-
~;;il;!i~ii~ii;
:=:: ............. age site, characteristic for proteins which are processed
94 ~ i: i
during the passage of membranes (Fig. 4) (Heijne, 1986).
67 -- '-* ~" However, further experiments must show whether this
-- EsV-gpl
site is used for the processing of glycoprotein 1, or, more
generally, how the mature viral structural protein is re-
lated to its larger precursor protein.
We have incubated Percoll-purified EsV particles with
the gpl-specific antibodies to determine possible effects
on viral infectivity. The results obtained were inconclu-
sive, we observed an antibody-specific reduction of in-
fected plants with some viral preparations, but no effects
1 2 3 4
of the antibody on the infectivity of other preparations. A
FiG. 6. identification of glycoprotein-1 as a viral structural protein. possible explanation may be that the presence of viral
Percoll-purified EsV was disrupted in SDS and investigated by denatur-
glycoprotein-1 (or its antigenic part) on the surface of
ing polyacrylamide gel (10%) electrophoresis (Laemmli, 1974). Lane 1,
silver staining; lane 2, blotting on nylon membrane and staining ac- viral particles varies with different preparations, de-
cording to Gershoni et aL (1985) for the identification of glycoproteins; pending, for example, on the status of virus assembly or
lane 3, blotting and probing with EsV protein-specific antibodies; lane maturation at the time when plants are disrupted for the
4, probing with preimmune control antibodies (see Fig. 5). isolation of virus. This possibility is supported by a com-
parison of the structural proteins in the virus preparation
used for the electrophoretic analysis in Fig. 2 (lane 2)
tein in EsV particles as prepared by the Percoll proce- with those in the virus preparation in Fig. 6 (lane 1),
dure. Viral particles were disrupted in the presence of the two independent virus preparations contain identical
fl-mercaptoethanol and SDS and investigated by dena- protein components, but in different relative amounts.
turing gel electrophoresis (Laemmli, 1974). We added
identical aliquots of the SDS-treated virus preparation to
several adjacent lanes of the polyacrylamide gel and DISCUSSION
stained one lane with silver salts (lane 1, Fig. 6). The We have described an improved method for isolating
proteins in other lanes were transferred to nylon mem- EsV from infected and diseased algae. Using this
branes for the identification of glycoproteins and for im- method, we avoid an exposure of PEG-precipitated virus
munoreactions with specific and preimmune control anti- to the high ionic strength of CsCI solutions and use in-
bodies. Using the enzyme-hydrazide method of Gershoni
et al. (1985) we could identify three glycoproteins with
apparent molecular weights of about 60, 56, and 35 kDa protease Lys C
(lane 2, Fig. 6). The specific antibodies strongly reacted
with the largest of the three EsV glycoproteins (lane 3,
Fig. 6). We refer to this protein as EsV glycoprotein-1 or kDa " "
EsV-gpl.
The relationship between glycoprotein-1 and the bac- 31.0 --
terially expressed protein was supported by biochemical 20.0
16.9
means using endoproteinase Lys-C. Proteolytic frag- 14.4 .........................

ments of identical electrophoretic properties were ob- 8.1


6,2
-
........................

tained after Lys-C treatment of glycoprotein 1 (eluted


from a polyacrylamide gel; see Fig. 6) and of the bacteri- --i--'--T--
ally expressed polypeptide (Figs. 5, 7). FIG. 7. Proteolysis. Glyooprotein 1 was identified on a Laemmli gel
We conclude that the open reading frame of 1983 as shown in Fig. 6 (lane 1). The corresponding gel slice was excised
bases (Fig. 4) corresponds to the EsV gene-encoding and added to a slot of a Tricine-SDS gel (Sch~gger and von Jagow,
viral glycoprotein-1. 1987). A parallel lane received 1.5 p,g of the bacterially expressed
There is, however, an important discrepancy between protein. Proteins in both lanes were then treated with 1 #g protease
Lys C (Boehringer Mannheim) for 30 min. Electrophoresis was per-
the apparent molecular weight of 60 kDa, electrophoreti- formed as described (Sch~gger and von Jagow, 1987). Peptides were
cally determined for the mature glycoprotein-1, and the visualized by silver staining. Asterisk, polypeptid e from the proteinase
molecular weight of 72 kDa, predicted from the open preparation used.
COAT PROTEIN OF Ectocarpus silicu/osus 525

stead Percoll-centrifugation as the final purification step. (Graves and Meints, 1992) but the implications for gene
The improved method yields viral particles with higher expression and regulation have yet to be worked out.
protein/DNA ratios than those of CsOl-purified viruses. It From a more practical point, the known sequence of
appears therefore that high CsCI concentrations disrupt a piece of the EsV genome offers the opportunity to use
the viral protein shell. We found that treatment with CsCI PCR assays, which will be of great value in investigating
interferes with the biological activity of EsV. the distribution of EsV in algal populations from natural
Percoll-purified viruses are composed of at least 16 habitats and in obtaining important new information con-
electrophoretically detectable structural proteins. Some cerning the ecological consequences of EsV induction
of these proteins are rather intensely stained by silver and infection.
salts and are therefore present in many copies per parti-
cle (Figs. 2, 6). These abundant proteins are most likely ACKNOWLEDGMENTS
the major building blocks forming the characteristic two- We thank Uwe Ramsperger for his help with electron microscopy
layered shell of densely packed virus particles in the and Martin Br~utigam for discussions. This work was supported by
infected cell (MOiler et aL, 1990) and of isolated infective Deutsche Forsohu nsgemeinschaft.
viruses. But we have no information yet concerning the
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