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There’s a whole New world to Discover under those two tiny lenses of a Microscope!
Agatha Cristie: “Nothing, I believe, is so full of life under the
microscope as a drop of water from a stagnant pool”
Hence…
4. CHAxxxxxxxxxxxxxxxx
NOTE:
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2nd year Microbio spot notes
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INDEX
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2nd year Microbio spot notes
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1. CULTURE MEDIA
Inoculated NA
Description Golden yellow colonies, oil Whitish, opaque Light whitish colonies with diffuse bluish
paint appearance colonies green pigment (pyocyanin)
Infections Abscesses, sinusitis, Same as S. aureus Nosocomial infections: - Urinary infections
endocarditis, osteomyelitis, following catheterization, eye inf., inf. in
pneumonia, TSS, SSSS, etc. burns, iatrogenic meningitis following
lumbar puncture, etc.
Community acquired: Suppurative otitis
Virulence Cell wall polysaccharide Exotoxin A
factors Teichoic acid Extracellular enzymes – proteases,
Capsular polysaccharide elastases, hemolysins
Protein A Slime layer
_ Pili
Clumping factor
Enzymes – coagulase,
lipase, hyaluronidase,
nuclease
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Characteristics Organisms
Blood agar with α – hemolytic colonies Greenish discolouration, zone S. pneumoniae,
of hemolysis 1-2 mm wide with S. viridans,
indefinite margins (partial
hemolysis)
Blood gar with β – hemolytic colonies Colourless zone of hemolysis 2- Most pathogenic
4 mm wide, clear, sharply streptococci and
defined margins (complete staphylococci
hemolysis)
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2nd year Microbio spot notes
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Note:
3. CHOCOLATE AGAR
4. MAC-CONKEY AGAR
Un-inoculated:
a) Peptone + lactose (differential component) + agar + sod. Taurochlorate (bile salt -
selective) + neutral red (indicator)
b) Selective medium – inhibits Gram +ve bacteria (d/t presence of bile salts)
Differential medium – to differentiate lactose fermenting and NLF Gram –ve bacilli
Mechanism: Fermentation of lactose by bacilli acid production decrease
in pH of medium below 6.8 colour change to pink
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c) Uses:
Isolation of organisms like Enterobacteriaceae, Klebsiella
As an indicator medium (neutral red serves as indicator)
MacConkey Agar with lactose fermenting colonies
(1) Saccharolytic species (eg. C. welchi) turn the medium pink; proteolytics (eg. C.
tetani) turn it black
(2) Differentiate putrefactive and saccharolytic anaerobes
Note:
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After inoculation, the medium is covered with a layer of sterile paraffin oil to prevent
oxygen entry
Meat particles are cooked because reducing substances are available more in
denatured proteins
6. TCBS AGAR
Contents:
Yeast extract
Sodium thiosulfate and sod. Citrate – to inhibit growth of Enterobacteriaceae
Ox bile - inhibits Gram +ve bacteria
Sucrose
Ferric citrate
Peptone
Agar
pH: 8.6 – to enhance growth of V. cholera and inhibit other intestinal flora
b) Selective medium – inhibitory to Gram +ve bacteria and most coliforms
Differential medium – differentiates sucrose fermenting (yellow colonies) and non-SF
bacteria (green colonies)
Indicator medium – Bromothymol blue serves as indicator (alkaline – green; neutral – blue;
acidic – yellow)
b) Uses:
To isolate Vibrio cholera (yellow colonies) and V. parahemolyticus (green
colonies)
Bacteria producing hydrogen sulfide can be detected…Na thiosulfate acts as a
source of sulfur, which in combination with Fe from Ferric citrate produce black
ferric sulfide
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Asparagine
Note:
LJ Medium is contained in Mc Cartney’s culture bottle (30 ml capacity)
Culture bottle is preferred over petri dish because of long incubation time; reduces
risk of contamination and drying up of medium. Also to prevent infection by
inhalation
b) Selective and enriched media
c) Method of sterilization here is inspissation at 85° C for 30 min for 3 consecutive
days
MTB appears as dry, rough, raised, buff colonies (“buff, rough and tough”) on LJ
Medium in 2-8 weeks when incubated at 37°C
M. bovis appears as flat, smooth, moist white colonies
d) Use:
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Dilution (1:10) of sample occurs so that antibiotics or other inhibitors in blood are
less likely to suppress growth
Enhanced growth of bacteria present in small numbers and may be difficult to
isolate if solid media are used alone
D.Adv: - Quantification of amount of growth can’t be done
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Incubation period: 6-8 hrs; sample must reach lab within 8 hrs
C. Tetrathione broth – enrichment medium for Salmonella - pinkish ppt.
D. Bile broth – enrichment medium for Salmonella, especially clot culture
E. Selenite F broth (tomato-red colour) :
F stands for “feces”
Enrichment medium for Salmonella from stool specimen
Incubated for 24-48 hrs before being transferred to selective media
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2. MICROBIOLOGICAL TESTS
I. Urease Test
Medium may be broth/agar slant
Original colour: yellow; +ve test: colour change to pink
Differs from TSI in having no butt
Phenol red indicator
Principle: Organisms break down urea to release NH3 and CO2. NH3
combines with CO2 and water to form ammonium carbonate which turns the
medium alkaline causing a colour change
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Plate method
IV. Oxidase Test
Kovac’s method
Tests ability of bacteria to utilize O2 for energy production
Reaction is d/t cytochrome c oxidase catalyzes oxidation of reduced
cytochrome by oxygen
Indicator – Tetra methylene p-Phenyl diamine hydrochloride
+ve test: Maroon/dark purple colour
-ve test: Colourless
+ve organisms: Pseudomonas, Neisseria, V. cholerae, Moraxella, H.pylori
-ve organisms: Enterobacteriaceae
Working:
If only glucose is fermented, enough acid is produced to turn only the butt yellow;
slant remains red
If either sucrose or lactose or both are fermented, large amounts of acid are
produced turning both the butt and slant yellow
If none of the sugars is fermented, both butt and slant remain red. The slant can
become a deeper red-purple (more alkaline) d/t production of ammonia from the
oxidative deamination of amino acids
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2nd year Microbio spot notes
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[At the slant, there is auto-oxidation of acidic substance, so when acid production is
less as when only glucose is utilized, the small acid production is overcome and the
slant is again neutralized and is red]
Results:
Alkaline slant/no change in butt (K/NC) i.e. Red/Red = glucose, lactose and sucrose
non-fermenter
Alkaline slant/Alkaline butt (K/K) i.e. Red/Red = glucose, lactose and sucrose non-
fermenter
Alkaline slant/acidic butt (K/A); Red/Yellow = glucose fermentation only
Acidic slant/acidic butt (A/A); Yellow/Yellow = glucose, lactose and/or sucrose
fermenter
Name of the
organisms Slant Butt Gas H2S
Escherichia,
Klebsiella,
Enterobacter Acid (A) Acid (A) Pos (+) Neg (-)
Shigella,
Serratia Alkaline (K) Acid (A) Neg (-) Neg (- )
Salmonella,
Proteus Alkaline (K) Acid (A) Pos (+) Pos (+)
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3. MYCOLOGY
Commonly laboratory contaminant and opportunistic fungus that grows rapidly on SDA
giving black coloured growth due to dark conidiospores.
Diseases : otomycosis
Pulmonary aspergillosis - invasive aspergillosis
Capable of growing within cavities formed within body due to pathogenic
processes to form asperigillus ball (Aspergilloma)
Allergic bronchopulmonary aspergillosis
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SLIDES OF MYCOLOGY :
CANDIDA ALBICANS
Gram positive yeast like candida
Diseases : Cutaneous - Intertrigo (papular erythematpus lesions )
Mucosal- Vaginal candidiasis,oral thrush
Intestinal candidiasis
Others - Systemic ;Bronchopulmonary septicemia endocarditis meningitis
Predisposing factors : diabetes prolonged , immunosuppression ,oral antibiotic therapy
Virulence test :germ tube test
Virulence factor : Formation of pseudohyphae to colonise and invade tissues
RHINOSPORIDIUM SEEBERI
Culture -only fungus that cannot be cultivated
Diseases : Rhinosporidiosis -chronic granulomatous disease
Nasal polyps ( common in swimmers ) shows fungal spherules with thousand
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2nd year Microbio spot notes
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endospores .
Mode of infection : From stagnant water /aquatic life
Showing the conidiophores which enlarges into vesicle . The vesicles bear short sterigmata (
phialides) which in turn bear chains of conidia .
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4. VIROLOGY
1) LEIGHTANT TUBE :
To see cytopathic effect produced by viruses
1/2 potion is flat .
Primary isolation of virus from the sample .
Incubation : a) in a sloped horizontal position ( stationary culture )
b) rolled in special roller drum to provide better aeration
Media kept in it : Hanks medium
Eagles medium
Indicator : Phenol red
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Acidophilic - Rabies
Basophilic - Adenovirus , CMV ( intranuclear)
5) EGG
It contain live embryo ( 5 - 7 days old ) and is very handy in cultivating viruses , chlamydia ,
rickettsia .
Candling is used to know where embryo in egg is living or not
Uses : preparation of vaccine , culture of viruses , counting of virus.
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2nd year Microbio spot notes
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Application in microbiology
Use of purpose
Indication for use
2) Disinfectants
Lysol(2-5%), glutaraldehyde(2%), formalin(4%), Na hypochlorite(7-5%)
Lysol : for sharp instruments
Glutaraldehyde : Bronchoscope, endoscope, cystoscope, corrugated rubber
anaesthetic tube
Face mask, plastic endotracheal tubes, catheter, instruments, polythene
tubing
Formalin : preserve anatomical specimen, destroy anthrax spores, sterilise
clean metal instrument(10% formalin + 0.5% Na hypochlorite)
Heat sensitive catheter
Na hypochlorite : 1% handwash, 2% for disinfecting workplace, liquid waste,
sharps, blood spill, 5% for disinfecting soiled linen and clothes
Mode of action : Bactericidal
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2nd year Microbio spot notes
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6) Autoclave
Like pressure cooker
121oC at 15 lbs for 15 min
Sterilisation by moist heat
For culture media, gowns, masks, dressings, suture material, pharmaceutical
products
126oC for 10 min, 134oC for 3 min
Sterilising control : Indicator(chemical / biological)
a)Chemical : Browne’s tube
Bowie dick tapes to test the presence of vacuum
Chemical dyes, chemicals with known melting point
b)Biological : Spores of Bacillus steaerothermophilus
Principle : latent heat, vacuum, penetrating power
Precautions :
a) Discharge tap is opened when atmospheric pressure is equal to pressure
inside autoclave, otherwise explosion of boiling liquid media.
b) All air present initially should be removed through discharge tap
8) Water bath
Sterilisation by moist heat at temp <100oC
Uses : Serum or body fluids containing coagulable proteins
56oC for 1 hour on several successive days(open from above)
Vaccine bath for inactivation of bacterial vaccines : 60oC for 1 hour
? Uses in serology tests
9) Inspissator
80-85oC for half an hour on 3 successive days
Uses : Media like Lowenstein Jensen, Loeffler’s serum(egg and serum
containing media)
Slant is because these media are required as sloped(VIVA)
Glass lid covered
Principle : Similar to tyndallisation
LJ medium : Asparagine, malachite green, mineral salts, hen’s egg, glycerol
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2nd year Microbio spot notes
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7. FILTERS
1) Seitz filter (Asbestos filter)
Made up of asbestos(magnesium silicate)
To sterilise heat labile substances like toxin, antibiotic solution, blood
products, hydatid fluid, etc
Sterilised by autoclave
Single use / disposable
High absorbing capacity / tends to alkalanise liquids
Has carcinogenic potential
Examples of asbestos filters : Seitz and Sterimat and Carlson filter
Uses of filters :
a) Removing bacteria from heat labile liquids – sera, sugar solution,
antibiotic solution
b) Obtain bacteria free filtrates for virus isolation
c) Concentrate bacteria e.g. testing water sample for cholera vibrio or
typhoid bacilli
d) Obtain bacterial toxins by passing cultures through filters
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4) Microtitre plate
For ELISA / IHA / HA / antibiotic sensitivity testing(AMST) for measuring
MIC(by micro broth dilution method) amongst antibiotics
For detecting antigens of HBsAg, HBeAg, P24Ag, rota virus Ag, dengue
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For detecting antibodies of anti HIV, anti HBc, toxoplasma, CMV, herpes,
leptospira, E. Histolytica, neurocysticercosis(NCC)
For detecting food toxins (e.g. aflatoxin), food adulterants
12x8 = 96 depressions
Made up of polypropylene or polystyrene
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Q) Which antigens are coated on filter paper strips for diagnosis of HIV infection?
P24 Ag
gag – p55 – p15, p18, p24
env – gp160 – gp120, gp41
pol – p31, p51, p66
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8. PARASITOLOGY
SPECIMENS
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SLIDES PARASITOLOGY
BINOCULAR MICROSCOPE
3)Tse-Tse fly
( 2-4) are seen
Disease : Sleeping sickness ,trypansomiosis ( west and east African)
Infective agent : Trypanosoma brucei
Mode of transmission - bite of tse tse fly .
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LIGHT MICROSCOPE
6) Cyclops
Drucunculus medenesis causing guinea worm disease
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