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Chapter at a Glance
The learner will be able to answer questions on the following topics:
Citric acid cycle Regulation of citric acid cycle
Significance of citric acid cycle Integration of metabolism
(tricarboxylic acid). The enzyme is citrate synthase and 5 coenzymes. This is similar to the pyruvate dehy-
(step 1, Fig. 20.2). The hydrolysis of the thioester bond drogenase reaction (Compare Fig. 20.3 with Fig. 10.19).
in acetyl-CoA drives the reaction forward. This is an ir-
reversible step. However, body can reverse this step by Fifth Step: Generation of Succinate
another enzyme, ATP-citrate lyase (see Fig. 13.11).
The next reaction involves a substrate level phospho-
rylation whereby a high energy phosphate is generated
Second Step: Formation of Isocitrate
from the energy trapped in the thioester bond of succinyl-
Citrate is isomerized to isocitrate by aconitase (step 2, CoA. The enzyme is succinate thiokinase (step 5, Fig.
Fig. 20.2). This reaction takes place in two steps, with 20.2). A molecule of GDP is phosphorylated to GTP
cis-aconitate as the intermediary. and succinate is formed. The GTP can be converted to
ATP by reacting with an ADP molecule:
Third Step: Formation of GTP + ADP → GDP + ATP
Alpha Ketoglutarate
This reaction is catalyzed by the enzyme, isocitrate
Sixth Step: Formation of Fumarate
dehydrogenase (step 3, Fig. 20.2). First isocitrate is Succinate is dehydrogenated to fumarate, an unsatu-
dehydrogenated to form oxalosuccinate. It undergoes rated dicarboxylic acid, by succinate dehydrogenase
spontaneous decarboxylation to form alpha ketoglutar- (step 6, Fig. 20.2). The hydrogen atoms are accepted
ate. The NADH generated in this step is later oxidized by FAD. The FADH2 then enters into ETC to generate
in electron transport chain (ETC) to generate ATPs. ATPs. The succinate dehydrogenase is competitively
Isocitrate (6 carbons) undergoes oxidative decarboxy- inhibited by malonate (see Fig. 5.19).
lation to form alpha ketoglutarate (5 carbons). In this
reaction, one molecule of CO2 is liberated. Seventh Step: Formation of Malate
The formation of malate from fumarate is catalyzed by
Fourth Step: Formation of Succinyl-CoA fumarase (step 7, Fig. 20.2). The reaction involves the
Next, alpha ketoglutarate is oxidatively decarboxy addition of a water molecule.
lated to form succinyl-CoA by the enzyme alpha keto-
glutarate dehydrogenase (step 4, Fig. 20.2). The Eighth Step: Regeneration
NADH thus generated enters into ETC to generate of Oxaloacetate
ATPs. Another molecule of CO2 is removed in this step.
Finally malate is oxidized to oxaloacetate by malate
This is the only irreversible step in the whole reaction
dehydrogenase (step 8, Fig. 20.2). The coenzyme is
cycle. The enzyme alpha ketoglutarate dehydrogenase
NAD+. The NADH is generated in this step, which enters
is a multienzyme complex having 3 enzyme proteins
the electron transport chain, when ATPs are produced.
The oxaloacetate can further condense with another
acetyl-CoA molecule and the cycle continues (Fig. 20.2).
Fig. 20.2: Krebs cycle or citric acid cycle or tricarboxylic acid cycle
Fig. 20.5: Summary of Krebs citric acid cycle. Enzymes are numbered. Reactions number 3 and 4 are carbon dioxide elimination
steps. Physiological regulatory steps are: Step No.1(citrate synthase) is physiologically inhibited by ATP. Step No.3 (ICDH) is inhibited
by NADH and activated by ADP. Steps where energy is trapped are marked with the coenzyme and the number of ATP generated dur-
ing that reaction. A total of 10 ATPs are generated during one cycle. Recent work shows that in the electron transport chain, NADH may
produce only 2 ½ ATPs and FADH only 1 ½ ATPs
TABLE 20.1: ATP generation steps TABLE 20.2: Stoichiometry of the TCA cycle
Step ATPs (old- ATPs (new Acetyl-CoA 2 CO2 +CoA-SH
No Reactions Coenzyme calculation) calculation) Oxaloacetate
Oxaloacetate
3 Isocitrate → NADH 3 2.5 FAD FADH2
alpha ketoglutarate
3NAD+ 3 NADH
4 Alpha ketoglutarate NADH 3 2.5
GDP + Pi GTP
→ succinyl-CoA
5 Succinyl-CoA GTP 1 1
→ Succinate
Fat is Burned on the Wick
6 Succinate → FADH2 2 1.5
Fumarate of Carbohydrates
8 Malate → Oxalo NADH 3 2.5
The oil in a lamp by itself cannot be lighted; the flame
acetate
needs a wick (Fig. 20.6). Similarly in the body, oxida-
Total 12 10
tion of fat (acetyl-CoA) needs the help of oxaloacetate.
One passage of cycle oxidizes acetyl-CoA into two CO2
iv. The integration of metabolism is achieved at junc- molecules. Here oxaloacetate acts as a true catalyst; it
tion points by key metabolites (Fig. 20.9). Several enters the cycle and is regenerated at the end. The major
pathways can converge at this point with the result source of oxaloacetate is pyruvate (carbohydrate).
that carbon atoms from one source can be used for Hence, carbohydrates are absolutely required for oxida-
synthesis of another. Important intermediates are tion of fats, or fats are burned in the fire of carbohy-
pyruvate, acetyl-CoA and oxaloacetate. drates.
Chapter 20: Citric Acid Cycle 333
Fig. 20.8: Efflux of TCA cycle intermediates Fig. 20.9: Influx of TCA cycle intermediates
TABLE 20.3: Metabolic defects of oxidative metabolism as a link between catabolic and anabolic pathways
Enzymes Reactions catalyzed Abnormalities (amphibolic role).
Pyruvate Pyruvate → acetyl- Lactic acidosis 2. Citric acid cycle is the source of reduced coen-
dehydrogenase CoA Neurological zymes (that form substrate for respiratory chain)
disorders
as well as precursors for synthesis of proteins and
Acyl-CoA Fatty acyl-CoA Organic aciduria, glutaric
nucleotides (anaplerotic pathway).
dehydrogenase → alpha, beta- aciduria, acidosis,
unsaturated fatty hypoglycemia . Electron 3. The sources of acetyl-CoA are pyruvate (from gly-
acyl-CoA flow from FAD → CoQ colysis) fatty acids (beta-oxidation), and ketogenic
affected
amino acids.
Pyruvate Pyruvate → Oxaloacetate needed
carboxylase Oxaloacetate for sparking TCA cycle is 4. All enzymes of the cycle are located inside the
deficient. Lactic acidosis, mitochondria.
hyperammonemia and
hyperalaninemia
5. 3 NADH molecules are generated in the cycle at
steps 3, 4 and 8. One FADH2 is formed at steps
6 and one GTP is formed at step 5.
(nonphysiological) agents which inhibit the reactions. 6. Both the carbon atoms of acetyl-CoA are removed
These are shown in Figure 20.5. as CO2 at steps 3 and 4.
A. Aconitase (citrate to aconitate) is inhibited by 7. 10 molecules of ATP are produced per turn of the
fluoroacetate. This is noncompetitive inhibition. TCA cycle (1 FADH2 = 1.5 ATP, 3 NADH = (3 × 2.5=
B. Alpha ketoglutarate dehydrogenase (alpha keto- 7.5 ATP, 1 GTP = 1 ATP). It is the main generator of
glutarate to succinyl-CoA) is inhibited by Arsenite. ATP among metabolic pathways.
This again is noncompetitive inhibition. 8. Alpha ketoglutarate dehydrogenase is the only irre
C. Succinate dehydrogenase (succinate to fuma- versible step in the TCA cycle.
rate) is inhibited by malonate; this is competitive 9. Oxaloacetate is the true catalyst, which enters and
inhibition. leaves the cycle unchanged.
10. Oxidation of fat (acetyl-CoA) needs help of oxalo
Metabolic Defects Related to Krebs Cycle acetate whose major source is pyruvate (carbohy-
Though extremely rare, some enzyme deficiency states drates). In other words, fats are burnt in the fire of
have been found to affect the operation of TCA cycle. carbohydrates.
These are given in Table 20.3. 11. Fat cannot be converted to glucose, as pyruvate to
acetyl-CoA is an irreversible step.
LEARNING POINTS, CHAPTER 20 12. The TCA cycle is regulated by cellular need of ATP.
1. Citric acid cycle is the final common oxidative path- 13. Deficiency of pyruvate dehydrogenase causes lac-
way that oxidizes acetyl-CoA to CO2. It also acts tic acidosis and neurological disorders.
20-1. All the enzymes catalyse reactions involving re- 20-9. Fumarate is produced from all the following,
moval of carbon dioxide, except: except:
A. Alpha ketoglutarate dehydrogenase A. Malate B. Argininosuccinate
B. Glutamate dehydrogenase C. Phenylalanine D. Tryptophan
C. Pyruvate dehydrogenase 20-10. TCA cycle is regulated by the availability of:
D. Isocitrate dehydrogenase A. ATP
20-2. Which intermediate of TCA cycle is an unsaturated B. Glucose
dicarboxylic acid? C. Fatty acid
A. Succinate B. Malate D. Succinate dehydrogenase
C. Oxaloacetate D. Fumarate 20-11. Which is the substrate level phosphorylation step
20-3. Glucose has 6 carbon atoms; these are removed in the TCA cycle?
as carbon dioxide in all the following steps, except: A. Alpha ketoglutarate to succinyl-CoA
A. Succinate dehydrogenase reaction B. Succinyl-CoA to succinate
B. Pyruvate dehydrogenase reaction C. Succinate to fumarate
D. Malate to oxaloacetate
C. Isocitrate dehydrogenase step
20-12. During starvation, all the following substances are
D. Alpha ketoglutarate dehyrogenase step
increased in blood or tissues, except:
20-4. How many ATPs are generated per one rota-
A. Ketone bodies B. Epinephrine
tion of the citric acid cycle? (how many ATPs are
C. Glycogen D. Glucagon
produced when one molecule of acetyl-CoA is
20-13. Which of the following enzymes is confined to the
oxidised in TCA cycle?)
mitochondria?
A. 2 B. 8
A. Lactate dehydrogenase (LDH)
C. 10 D. 15
B. Malate dehydrogenase (MDH)
20-5. All the following reactions involve in the genera- C. Glucose–6-phosphate dehydrogenase
tion of NADH, except: D. Succinate dehydrogenase (SDH)
A. Isocitrate to alpha ketoglutarate 20-14. Starvation activates all the enzymes, except:
B. Alpha ketoglutarate to succinyl-CoA A. Alanine amino transferase
C. Fumarate to malate B. Carnitine acyltransferase
D. Malate to oxaloacetate C. HMG-CoA lyase
20-6. Acetyl-CoA is used for the production of all the D. ATP citrate lyase
following, except: 20-15. Which of the coenzymes do not take part in TCA
A. Oxidation in TCA cycle cycle?
B. De novo synthesis of fatty acid A. NAD+ B. PLP
C. Glucose C. FAD D. TPP
D. Cholesterol 20-16. The amino acids entering TCA cycle as succinyl-
20-7. Acetyl-CoA is produced from all the following, CoA are all except:
except: A. Valine B. Methionine
A. Pyruvate C. Tyrosine D. Isoleucine
B. Beta-oxidation of fatty acids 20-17. Which of the reactions listed replenishes a TCA
C. Leucine cycle intermediate?
D. Aspartic acid A. Heme synthesis
20-8. Succinyl-CoA is formed from all the following, except: B. Transamination of oxaloacetate
A. Aspartic acid B. Isoleucine C. Carboxylation of pyruvate
C. Valine D. Odd chain fatty acids D.
Reutilization of ketone bodies.
Chapter 20: Citric Acid Cycle 337
20-18. The TCA cycle is the final common oxidative path- 20-20. Which amino acid can enter the TCA cycle as fuma
way because rate and oxaloacetate?
A. It provides large a fraction of energy A. Aspartate B. Glutamate
B. Acetyl-CoA derived from all sources can be oxidi C. Arginine D. Serine.
zed 20-21. From the pairs of inhibitors and enzymes, pick out
C. Operates in the mitochondria close to ETC the mismatched pair.
D. It is a cyclical process
A. Alpha ketoglutarate dehydrogenase and arsenite
20-19. Which of the intermediates listed is a dicarboxylic
B. Malonate and succinate dehydrogenase
hydroxy acid?
A. Succinate B. Fumarate C. Fluoroacetate and aconitase
C. Malate D. Oxaloacetate D. Iodoacetate and malate dehydrogenase
20-1.
B 20-2.
D 20-3.
A 20-4.
C 20-5.
C 20-6.
C 20-7.
D
20-8.
A 20-9.
D 20-10.
A 20-11.
B 20-12.
C 20-13.
D 20-14.
D
20-15. B 20-16.
C 20-17.
C 20-18. B 20-19.
C 20-20.
A 20-21. D
20-1. What are the steps in which carbon dioxide is 20-6. How many ATPs are generated per one rotation of
liberated, during oxidation of glucose? the citric acid cycle?
Pyruvate dehydrogenase; Isocitrate dehydrogenase; 10 ATP .
Alpha ketoglutarate dehydrogenase 20-7. What is the net yield of ATP from one molecule of
20-2. Acetyl-CoA is produced from what substrates? glucose in anaerobic glycolysis?
Pyruvate; Fatty acids; ketogenic amino acids 2 ATP.
20-8. What is the net yield of ATP from one molecule of
20-3. Acetyl-CoA is used for what purposes?
glucose in aerobic glycolysis?
Oxidation in TCA cycle; fatty acid synthesis; choles-
7 ATP.
terol synthesis; ketone body formation.
20-9. During complete oxidation, what is the net yield of
20-4. Give examples of substrate level phosphorylation. ATP from one glucose molecule?
1,3-bisphospho glycerate kinase; Pyruvate kinase; 32 ATP.
Succinate thiokinase. 20-10. What is anaplerosis?
20-5. Which is the substrate level phosphorylation step The reactions which involve replenishment of TCA cy-
in the TCA cycle? cle intermediates. For example, pyruvate gives rise to
Succinate thiokinase oxaloacetate.