Beruflich Dokumente
Kultur Dokumente
Research paper
Shinobu Itoha,
⁎
a
Department of Material and Life Science, Division of Advanced Science and Biotechnology, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita,
Osaka 565-0871, Japan
b
Comprehensive Analysis Center, The Institute of Scientific and Industrial Research (ISIR), Osaka University, 8-1 Mihogaoka, Ibaraki, Osaka 567-0057, Japan
c
Picobiology Institute, Graduate School of Life Science, University of Hyogo, RSC-UH Leading Program Center, 1-1-1 Koto, Sayo-cho, Sayo-gun, Hyogo 678-0057, Japan
Keywords: Oxido-alcoholato- and oxido-thiolato-molybdenum(VI) complexes bearing two ene-1,2-dithiolate ligands (cy-
Molybdenum(IV) clohexene-1,2-dithiolate) are prepared as synthetic models of molybdenum(VI) reaction centers of dimethyl
Molybdenum(VI) sulfoxide reductase family of molybdenum enzymes. These complexes are prepared by oxygen atom transfer
Dithiolene from tertiary amine N-oxide (trimethylamine N-oxide and N,N-dimethylaniline N-oxide) to the five-coordinate
Enzyme model
alcoholato- and thiolato-molybdenum(IV) complexes, and are characterized by UV–vis, cold-spray-ionization
Oxygen atom transfer
mass, resonance Raman, and 1H NMR spectroscopies. The oxygen atom transfer reactions are studied kinetically
at a low temperature (−40 °C) to demonstrate that the reactivity of the thiolato-molybdenum(IV) complex is
higher than that of alcoholato-molybdenum(IV) complex by about 7 times, and that the oxygen atom transfer
reactivity increases with increasing the electron withdrawing ability of the p-substituent of N,N-dimethylaniline
N-oxide derivatives. Mechanistic details are discussed based on the reactivity studies.
1. Introduction induce OAT from nitrate (NO3−, nitrate reductase) [1,2,4,5,6] Since the
oxygen atom abstraction becomes more difficult in the order of
The majority of molybdenum enzymes catalyzes net oxygen atom Me3NO < DMSO < NO3−, the molybdenum centers with −O2C·Asp
transfer (OAT) reactions from water to the substrates (H2O + S → and −S·Cys residues may have higher reactivity as compared to that
SeO + 2e− + 2H+) or their backward reactions [1–3]. The enzymes with −O·Ser.
constitute the oxotransferase class of molybdenum enzymes, most of In the modeling studies of the active sites of the DMSOR family
which structurally belong to dimethylsulfoxide reductase (DMSOR) molybdenum enzymes, molybdenum complexes formulated as MoIV(X)
family [1–3]. The OAT reactions occur between the molybdenum(IV) (ene-1,2-dithiolate)2 and MoVIO(X)(ene-1,2-dithiolate)2 have been re-
and molybdenum(VI) centers of the enzymes [1,2]. The DMSOR family vealed to reproduce stereo-chemical and electronic features related to
is featured by the presence of a mononuclear molybdenum center co- the coordination environments of the enzyme active sites [7–14]. Holm
ordinated by two ene-1,2-dithiolate chelate ligands, that is, the pyr- and co-workers have developed the alcoholato-, thiolato, and carbox-
anopterin cofactors (MPT) [1]. The molybdenum(IV) centers exhibit a ylate-molybdenum(IV) centers with bis(ene-1,2-dithiolate) chelates,
five-coordinate structure with one amino acid residue (X), whereas the using 1,2-dimethylethylene-1,2-dithiolate (S2C2Me2) or 1,2-dipheny-
molybdenum(VI) centers have one additional oxido group (Fig. 1), that lethylene-1,2-dithiolate (S2C2Ph2), as the model complexes of the re-
comes from the oxygenated substrates (SeO) [1–3]. The enzymes duced states of the DMSOR family [7,15–19]. With respect to the che-
having a molybdenum(IV) center coordinated by −O·Ser catalyze OTA mical functions, however, only the reactivity of the alcoholato-
reactions from DMSO and trimethylamine N-oxide (Me3NO, trimethy- moybdenum(IV) complexes was examined in the OAT reactions from
lamine N-oxide reductase), while the enzymes possessing a mo- Me3NO and DMSO, because the reactions of the thiolato- and carbox-
lybdenum(IV) center coordinated by −O2C·Asp or −S·Cys residue ylato-molybdenum(IV) complexes with those substrates (SeO) were too
⁎
Corresponding authors.
E-mail addresses: sugimoto@mls.eng.osaka-u.ac.jp (H. Sugimoto), shinobu@mls.eng.osaka-u.ac.jp (S. Itoh).
https://doi.org/10.1016/j.ica.2018.10.001
Received 25 July 2018; Received in revised form 1 October 2018; Accepted 1 October 2018
Available online 03 October 2018
0020-1693/ © 2018 Elsevier B.V. All rights reserved.
H. Sugimoto et al. Inorganica Chimica Acta 485 (2019) 42–48
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H. Sugimoto et al. Inorganica Chimica Acta 485 (2019) 42–48
FT–IR spectra were recorded with a Jasco FT-IR 4100 spectrometer. Single crystals of MoIV(OEt), MoIV(OPh), MoIV(OPr2Ph), and −
1
H NMR spectra were recorded with a JEOL Lambda 300, and TMS were obtained by vapor diffusion of diethyl ether into the acetonitrile
signal was adjusted to 0 ppm. UV–vis spectra were recorded on a HP- solutions. Each single crystal obtained was mounted on a loop, and all
8453 equipped with a Unisoku thermostat cell holder (USP–203). CSI- measurements were made on a Rigaku RAXIS RAPID imaging plate area
MS (cold electrospray ionization mass spectrum) measurements were detector with graphite monochromated Mo-Kα radiation. The structures
performed on a BRUKER cryospray microTOFII. Resonance Raman were solved by direct methods (SIR2011) and refined anisotropically by
scattering was excited at 590 nm with an Ar + ion laser (Spectra full–matrix least squares on F2 [25]. The hydrogen atoms were attached
Physics, BeamLok 2080). Resonance Raman scattering was dispersed by at idealized positions on carbon atoms and were not refined. All
a 75-cm single spectrometer (SPEX750M; Jovin Yvon) and was detected structures in the final stages of refinement showed no movement in the
by a liquid nitrogen cooled CCD detector (Spec10:400B/LN; Roper atom positions. The calculations were performed using Single–Crystal
Scientific). The resonance Raman measurement was carried out using a Structure Analysis Software, version 3.8 [26]. Crystallographic para-
spinning NMR tube at −80 °C by flashing cooled dinitrogen gas. meters are summarized in Table 1.
Table 1
Crystallographic data for MoIV(OEt), MoIV(OPh), MoIV(OPr2Ph), and MoIV(SPr3Ph).
MoIV(OEt) MoIV(OPh) MoIV(OPr2Ph) MoIV(SPr3Ph)
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H. Sugimoto et al. Inorganica Chimica Acta 485 (2019) 42–48
(b) (c)
(a)
O1
O1
S4 S2 O1
C8 S4 S2
C2 C8 S4 S2
C2
Mo1 C8 C2
Mo1
C7 Mo1
S3 C7 S3
S1 C1 S1 C1 C7 S3 S1 C1
IV IV IV Pr2
Fig. 3. Crystal structures of the anionic parts of (a) Mo (OEt), (b) Mo (OPh), and (c) Mo (O Ph). Hydrogen atoms are omitted for clarity.
Table 2 Table 3
Selected bond lengths (Å) and angles (°) of MoIV(OR) complexes. Selected bond lengths (Å) and angles (°) of MoIV(SPr3Ph).
MoIV(OEt) MoIV(OPh) MoIV(OPr2Ph) MoIV(SPr3Ph)
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H. Sugimoto et al. Inorganica Chimica Acta 485 (2019) 42–48
(a) (b)
1.5 324
Sim.
Absorbance
1.0
0.5
449.0
778
441.0
443.0
448.0
442.0 450.0
containing MoIV(OEt) and Me3NO exhibited a Raman band at due to MoVIO(OEt) with clear isosbestic points at 307 and 401 nm. The
872 cm−1 that is assignable to a ν(Mo]O) stretching vibration (Fig. decay of the absorption band at 324 nm obeyed first-order kinetics as
S2). Weak intensity of the peak at 872 cm−1 may be due to instability of shown in the inset of Fig. 6a. The apparent first-order rate constant kobs
the generated complexes under photo-irradiation conditions. On the exhibited first-order dependence on the concentration of Me3NO
basis of these spectroscopic data (UV–vis, CSI-mass, 1H NMR, and (Fig. 6b). Thus, the oxygen atom transfer reaction can be expressed by
Raman spectra), we concluded that oxido-ethanolato-molybdenum(VI) the second-order rate law, v = k2[MoIV(OEt)][Me3NO], for which the
complex of L, MoVIO(OEt), was generated by oxygen atom transfer second-order rate constant k2 was calculated to be 5.0 × 10−2 M−1 s−1
(OAT) from Me3NO to MoIV(OEt). This is the first example of spec- from the slope of the linear plot of Fig. 6a. The kinetic analysis was also
troscopically characterized bis(ene-1,2-dithiolato)oxido-alcoholato- carried out the for the OAT reactions from Me3NO to the phenolato-,
molybdenum(VI) complex that was formed by OAT from an enzymatic 2,6-di-isopropyl-phenolato-, and 2,4,6-tri-isopropyl-thiophenolato-mo-
substrate (amine-oxido) to the des-oxido-molybdenum(IV) complex. lybdenum(IV) complexes. The spectroscopic changes and the kinetic
Under similar reaction conditions for MoIV(OEt), MoIV(OPh)L, and analyses are given in Figs. S10, S9, and S12, and the k2 values thus
MoIV(OPr2Ph) were treated with Me3NO in CH3CN or in C2H5CN at the obtained are listed in Table 4.
low temperature (−40 °C). Monitoring the reactions by the UV–vis, 1H Among the three alcoholato complexes, MoIV(OPh) exhibited the
NMR, CSI-mass, and resonance Raman spectroscopic methods revealed highest reactivity. This can be explained, if the less OPh− → MoIV
that the corresponding oxido-molybdenum(VI) complexes, MoVIO electron donation makes the MoIV center more Lewis acidic than that in
(OPh)L and MoVIO(OPr2Ph), were formed by the OAT reaction from MoIV(OEt), resulting in facile coordination of Me3NO to the MoIV
Me3NO (Figs. S3, S4, S5, and S6). The ν(Mo]O) stretches of MoVIO center, and if the two isopropyl groups at the 2 and 6 positions of
(OEt) at 872 cm−1 and of MoVIO(OPr2Ph) at 871 cm−1 are very close to MoIV(OPr2Ph) sterically prevent the coordination of Me3NO to the MoIV
that of Rh. Sphaeroides DMSOR (862 cm−1) [27]. center.
In a similar way, the oxido-thiolato-molybdenum(VI) complex In the case of MoIV(SPr3Ph), the reaction at −40 °C was too fast to
MoVIO(SPr3Ph) was generated by the OAT reaction from Me3NO to be followed by UV–vis spectroscopy. Thus, the kinetic study was carried
MoIV(SPr3Ph) but at a lower temperature (−60 °C). The UV–vis, CSI- out at −60 °C (Fig. S12). Then, the oxygen atom transfer reactivity of
mass, and resonance Raman spectra are given in Figs. S7, S8, and S9. MoIV(SPr3Ph) at −40 °C was estimated as 17.4 × 10−2 (M−1 s−1) by
MoVIO(SPr3Ph) showed a significant red shift of the absorption bands in extrapolating the reaction rate constants obtained at the lower tem-
the visible region (λmax (ε) = 640 (5100) and 830 nm perature to that at −40 °C in the Eyring plot shown in Fig. S13. Ap-
(1200 M−1 cm−1)) when compared with those of the alcoholate com- parently, the reactivity of MoIV(SPr3Ph) is 7 times higher than that of
plexes, MoVIO(OEt) (λmax (ε) = 573 (3600) and 778 nm MoIV(OPr2Ph). As revealed by the crystal structural analysis, the
(2200 M−1 cm−1)), MoVIO(OPh) (615 (3600) and 815 nm MoeSeC bond angle of 107.2(3)° in MoIV(SPr3Ph) is more acute when
(2100 M−1 cm−1), and MoVIO(OPr2Ph) (624 (3900) and 820 nm compared with the MoeOeC bond angle of 160.5(4)° in MoIV(OPr2Ph).
(2000 M−1 cm−1). Thus, MoIV(SPr3Ph) may offer a less crowded vacant site around the
molybdenum center, making the access of Me3NO to the MoIV center
3.3. Kinetic study of oxygen atom transfer reactions from tertiary amine N- easier. The significant contribution of p orbital character of the S atom
oxide to alcoholato-and thiolato-molybdenum(IV) complexes to the MoeSeC bond angle, as reflected by the bond angle that is close
to 90°, may have an electronic component that favors substrate binding.
An oxygen atom transfer (OAT) from Me3NO to MoIV(OR/SR) To get further insight into the reaction mechanism, N,N-dimethy-
complexes was then examined kinetically. Fig. 6a shows the UV–vis laniline N-oxide and its para-substituted derivatives ((p-A-C6H4)N
spectral change for the OAT reaction from Me3NO to MoIV(OEt) in (Me)2O) were employed as the substrates for the OAT reactions with
CH3CN at −40 °C. The absorption band at 324 nm due to MoIV(OEt) MoIV(OPr2Ph) and MoIV(SPr3Ph). Fig. S14 shows a typical example of
decreased with simultaneous increase of the bands at 573 and 778 nm the UV–vis spectral change for the OAT reaction from (C6H5)N(Me)2O
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H. Sugimoto et al. Inorganica Chimica Acta 485 (2019) 42–48
(a) (b)
0 1.5
324 nm
1.5
324
ln(A∞–A)
k2 = 5.0 x 10-2 M-1 s-1
Absorbance
1.0 1.0
0.0
400 600 800 1000
Wavelength / nm
0.0
0 5 10 15 20 25
103 [Me3NO] / M
Fig. 6. (a) UV–vis spectral changes for the OAT reaction from Me3NO (5.0 mM) to MoIVO(OEt) (0.10 mM) in CH3CN at −40 °C; inset, a first-order plot based on the
absorption change at 324 nm. (b) Plot of kobs against [Me3NO].
Table 4 substituents may accelerate the dissociation of the tertiary amine from
The k2 values for the OAT reactions from Me3NO to MoIV(OR) and MoIV(SR) at intermediate A (kd process), whereas the electron-donating substituents
−40 °C. may accelerate the addition of N-oxide to the Mo(IV) center (ka pro-
MoIV(OEt) MoIV(OPh) MoIV(OPr2Ph) MoIV(SPr3Ph) cess). The observed positive Hammettρvalues (Fig. 7) suggest that the ka
process is more dominant as compeered to the kd process in the present
102k2/M−1 s−1 5.0 320 2.5 17.4a OAT reaction. Moreover, the larger ρ value obtained with MoIV(SPr3Ph)
a suggests that the kd process becomes more significant in the oxygen
Extrapolated value using the Eyring plot shown in Fig. S13.
atom abstraction by MoIV(SPr3Ph).
to MoIV(OPr2Ph) in CH3CN at −40 °C. The absorption band at 340 nm
due to MoIV(OPr2Ph) decreased with simultaneous increase of the 4. Conclusion
bands at 624 and 820 nm due to MoVIO(OPr2Ph), keeping clear iso-
sbestic points at 316, 396, and 426 nm. The λmax and ε values of the In this study, we have prepared a series of bis(ene-1,2-dithiolate)-
final spectrum were identical to those of MoVIO(OPr2Ph) characterized oxido-alcoholato- and oxido-thiolato-molybdenum(VI) complexes as
above. Then, the rate constants were plotted against the substituent the models for oxidized DMSOR family of molybdenum enzymes by the
constants σ to give a relatively small positive Hammett ρvalues in both OAT reaction from tertiary amine N-oxides to des-oxido molybdenum
cases (ρ = +0.52 for MoIV(OPr2Ph) and ρ = +0.80 for MoIV(SPr3Ph)). (IV) complexes. The molybdenum(VI) complexes were stable enough to
The results clearly indicate that the OAT reactivity increases as the be characterized at low temperature. Kinetic study for the OAT reaction
electron density of the oxygen atom of N-oxide becomes smaller. Such revealed that the reactivity for the OAT by MoIV(SR) is 7 times higher
results can be explained by the reaction involving two steps; (i) re- than that by MoIV(OR). Such a higher reactivity of MoIV(SR) can be
versible addition of the tertiary amine N-oxide to the molybdenum(IV) attributed in part to the less crowded coordination environment around
center of MoIV(OPr2Ph) and MoIV(SPr3Ph) generating an intermediate the molybdenum center as revealed by the acute MoeSeC bond angle.
A (ka and k−a) and (ii) dissociation of the tertiary amine from inter- The present results will provide important insights into the catalytic
mediate A (kd) as illustrated in Fig. 8. If so, the electronic effect of the p- mechanism as well as spectroscopic properties of the reaction centers in
substituents may operate oppositely. Namely, the electron withdrawing the molybdenum enzymes.
(a) (b)
1.0 1.0
MoIV(OPr2Ph) MoIV(SPr3Ph)
CN
log(k2(A) / k2(H))
log(k2(A) / k2(H))
0.5 0.5 Br
Br
CN
Me
0.0 OMe 0.0
OMe
H H
Me ρ = +0.52 ρ = +0.80
-0.5 -0.5
-0.8 -0.4 0.0 0.4 0.8 -0.8 -0.4 0.0 0.4 0.8
σ σ
Fig. 7. Hammett plots for the OAT reactions from (p-A-C6H4)N(Me)2O to (a) MoIV(OPr2Ph) in CH3CN at −40 °C and (b) MoIV(SPr3Ph) in C2H5CN at −60 °C.
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