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Basics
LIS Overview................................................................................................................................................ 5
What is an LIS? ......................................................................................................................................... 5
How does an LIS work? ............................................................................................................................ 5
General Schematic of an LIS .................................................................................................................... 6
Summary of LIS Workflow Steps............................................................................................................... 7
How do Instruments “TALK" with an LIS? ............................................................................................... 10
Cable Specifications ................................................................................................................................ 11
References .............................................................................................................................................. 11
DATA STREAM VERSUS PORT CONFIGURATION ............................................................................... 12
BASIC LIS TERMS..................................................................................................................................... 14
LIS CONFIGURATION SCREEN TERMS ................................................................................................. 17
LIS WORKLIST SCREEN TERMS............................................................................................................. 20
IMMULITE LIS SETUP ............................................................................................................................... 21
1) Connect the Cable .............................................................................................................................. 21
2) Configure LIS Parameters................................................................................................................... 21
3) Test the Communication ..................................................................................................................... 21
4) Test IMMULITE Host Query (if applicable) ......................................................................................... 21
5) Manage Results .................................................................................................................................. 21
IMMULITE 1000 LIS Setup ........................................................................................................................ 23
1) Connect the Cable .............................................................................................................................. 23
2) Configure LIS Parameters................................................................................................................... 23
3) Test the Communication ..................................................................................................................... 25
4) Test IMMULITE 1000 Host Query (if applicable) ................................................................................ 25
5) Manage Results .................................................................................................................................. 25
IMMULITE 2000/2500 LIS Setup ............................................................................................................... 27
1) Connect the Cable .............................................................................................................................. 27
2) Configure LIS Parameters................................................................................................................... 27
3) Test the Communication ..................................................................................................................... 29
4) Test IMMULITE 2000/2500 Host Query (if applicable) ....................................................................... 29
5) Manage Results .................................................................................................................................. 29
SMS LIS Setup........................................................................................................................................... 31
1) Connect the Cable .............................................................................................................................. 31
2) Configure LIS Parameters................................................................................................................... 31
3) Test the Communication ..................................................................................................................... 34
4) Test SMS Host Query (if applicable)................................................................................................... 35
5) Manage Results .................................................................................................................................. 35
Panels on SMS .......................................................................................................................................... 37
SMS LIS FAQs ........................................................................................................................................... 38
IMMULITE 2000/2500/SMS LIS Troubleshooting.................................................................................... 42
Siemens Diagnostics IMMULITE/ LIS Interface Policy ........................................................................... 42
LIS 15 Second Timeout........................................................................................................................... 43
LIS 30 Second Timeout........................................................................................................................... 43
LIS <ENQ> Contention Messages .......................................................................................................... 44
Invalid Password, Sender ID and/or Receiver ID.................................................................................... 44
Error 12327.............................................................................................................................................. 44
LIS Screen – 10,000 Records ................................................................................................................. 44
There are no “Tagged” Records.............................................................................................................. 45
Miscellaneous Errors............................................................................................................................... 45
APPENDIX.................................................................................................................................................. 46
IMMULITE LIS ERROR MESSAGE DEFINITIONS ................................................................................... 46
IMPACT OF LIS AND SMS SETTINGS ON SMS AUTO-RETRIEVAL BEHAVIOR ................................ 62
The three primary functions of an LIS system are test ordering, result management and
reporting, and billing. An LIS is comprised of complex software applications that are
customized to each laboratory’s current policies and standard operating procedures.
The laboratory provides the information used to build the necessary tables and
definitions, which are first validated and then maintained.
An LIS has modular components, so that the laboratory can select the appropriate
modules. There are basic test ordering and billing modules, and modules designed for
specific lab disciplines, such as microbiology, blood banking, and genetics testing.
Some vendors offer all components; others specialize in specific modules.
Laboratory Information Systems have impacted the way lab testing is performed. Prior
to an LIS, laboratory technologists were responsible for writing down each test result, or
keeping track of little slips of paper from each instrument. These individual pieces of
paper had to be organized for the doctors by taping them to a patient’s chart, or re-
typing all the results into a computer to collate onto separate pages. Both options are
very time consuming and cause risk for data entry errors. Instruments directly
interfaced with the LIS offer an efficient method for accurate reporting of patient result
data.
The LIS is typically a centralized computer, but systems using a local area network
(LAN) of personal computers are common in smaller labs. The LIS manages the basic
information steps in laboratory operation. It provides the functionality to order tests;
enter test results, report the results, and bill for the testing.
In its most basic form, an LIS is a big data collator. An LIS works just like any other
computer: data is entered as input and reports are generated as easy to read output.
A generic schematic of how an LIS may be layed-out in a typical lab assumes there may
be multiple technologists operating instruments from several of the workstations. A
workstation is simply an LIS terminal or PC allowing the operator to work with the LIS
software.
Other configurations could be in place in larger facilities. In this case, there may be
fewer workstations, and the technologist would then accept results from multiple
instruments. Often, in larger more complex operations, the LIS connects multiple
sections within the lab, and could also be connected to the internet, and; therefore,
would also connect multiple off-site locations.
1. Work orders for patients are created in the LIS or transferred from the HIS.
2. The LIS assigns accession numbers to patient samples, and produces barcode
labels and collection lists to facilitate sample collection.
Order Entry
The order or lab request placed in the system contains the request of tests to be
performed. An almost universal requirement for using an LIS is to have a unique
accession number for each and every patient sample. A patient may have
multiple accession numbers, so each patient must have a unique identifier as
well. The unique identifier is usually called a medical record number, patient ID
or patient record number. In addition, the LIS will print barcoded labels (with the
unique accession #) for the draw tubes. In some cases, more advanced LIS
products will also provide a separate and unique identifier for each patient
sample. This provides the ability to track, at the sample level, the chain of
custody from the point it is taken from the patient to the point that it is discarded.
The sample-accession-patient hierarchy is linked in a tree-like numeric structure.
Sample Receiving
Most LIS systems can be configured to download patient sample data to an
instrument either after the order is placed, or when a patient sample is verified as
received in the lab. When the barcoded sample tube is read by the instrument,
the unique ID is read off the sample tube label and matched with the order by the
instrument.
6. If configured for Bi-Directional Query, the operator places the barcoded sample
tubes onto the instrument. When the instrument scans the sample tube
barcodes, it sends a message to the LIS asking for test orders for that accession
number – this is also called “Host Query”.
7. Patient samples are processed and results are uploaded from the Instruments to
the LIS.
Results Entry/Verification –
When results of lab tests are available, they are entered into the LIS manually or
automatically uploaded from an instrument if it is interfaced. Results must be
reviewed prior to their release. Typically, this review is performed by a laboratory
professional who verifies each result. More recently, software has been
developed that can verify results in the same manner as a lab technologist
would. This is done by constructing a series of rules that are used to verify each
test result. This software based approach is called autoverification and recent
applications can use very complex rule sets that incorporate patient information
8. Released results are often compiled and printed on patient-specific lab reports
and LIS patient records are updated with the result information.
Most laboratory Instruments and instruments have the capacity to communicate with an
LIS. Just like a group of computers interconnected in a network, instruments can be
“networked” or interfaced with an LIS. To accomplish this, an interface must be created
so the Instrument’s computer can “talk” with the LIS computer.
The interface is nothing more than a small program that translates what the Instrument
is “saying” into language that the LIS can understand. Likewise, this interface translates
what the LIS is “saying” into language that the instrument can understand. The
interface is usually written by the LIS vendor and comes at a cost to the lab ($5,000 or
more per instrument). The interface allows data to move back and forth between the
LIS and the Instruments, carrying test orders for patient samples to the instruments
(linked to the accession number), and results from those test orders back to the LIS
(again, linked to the accession number).
Occasionally an LIS is not connected via a communications cable with any instrument in
a lab (in this case results would be entered manually). Most are connected to every
Instrument and every lab department. LIS terminals are commonly found on every
bench-top and near every instrument.
Physical
Instrument has an active input/output port connected with a computer cable.
The host computer (LIS) must have a corresponding I/O port available.
A connection cable is required from the instrument to the host system.
Hardware
The instrument usually has a data management system.
Sometimes intermediate devices are used between the instrument and the
connection to the host system. These devices may include specialized interface
workstations that provide additional data management capability (commonly
referred to as middleware).
Software
The main categories of system software used by all three components (host LIS,
an intermediate device, and instrument) are operating software and application
software.
o Operating software controls basic machine functions; such as interaction
with the I/O devices, memory management, disk access, and creating the
application software environment.
o Application software provides all of the “user visible” features and
functionality.
For the interface to “run” smoothly, all of these elements must be working in conjunction
with each other. There can be issues with the “language” used in communication;
Cable Specifications
The LIS vendor or the Lab is responsible for the cable. The cable is commonly an
RS232 Null Modem cable with a DB9 (9-Pin) Female connector at the IMMULITE port
or a Network cable that is connected to the IMMULITE with an RJ45-DB9 converter.
More recently, standard RJ45 network cables or USB based cable connections are
becoming more widely used.
The cable can be purchased at Radio Shack or a similar electronics store. Since
troubleshooting LIS errors may involve testing the cable, it is a good idea to have a
spare one available.
When using a serial (RS232) connection, the IMMULITE systems send on pin 3 and
receive on pin 2 (see diagram below). Pin 5 is the ground.
There are some common LIS communication errors that may occur. The
Troubleshooting Section of this booklet describes these errors and actions that should
be taken to help troubleshoot the issue.
References
http://www.medtechnet.com/public_pdf/mtc16pdf.pdf
http://en.wikipedia.org/wiki/Laboratory_information_system
Cable from
SMS COM
Port 10 Cable to
LIS COM
Port 1
This approach to instrument identification is no longer viable with the advent of lab
automation and systems like the Immunoassay Workcell. Lab automation enables
multiple instruments to send results using the same data cable, and all of those results
enter a single COM port in the LIS. Therefore, since a single COM port receives results
from multiple instruments, the port number alone can no longer be used to uniquely
identify a specific instrument.
The method of instrument identification needs to change. The new method uses the
actual data stream itself to identify the instrument. We recognize that every time an
IMMULITE system communicates with the LIS, it sends a bulk of information other than
just the accession number and the result.
One of the data fields sent is the Instrument ID. This field has not been used often in
the past because both instrument and LIS vendors relied on port numbers to identify the
instrument. However, the field has been available for use for a long time, and we now
need to embrace its capabilities.
The Instrument ID field has to be read by the LIS in order for the result message to link
the instrument identification to the result. The laboratory must coordinate with their LIS
vendor to make this change, and the LIS vendor usually charges the laboratory.
Approximate charges have been about $1,200.
In an IA Workcell Configuration, there is still a Single Port Connection to the LIS. This
port cannot be used to identify which instrument results are coming from.
Header Message ("H" message) – First message sent in any transaction, contains
system information such as sender ID, receiver
ID, address, etc.
Order Message ("O" message) – Defines which test, such as TSH or HCG,
should be performed on the patient sample for
a particular accession number.
Patient Message ("P" message) – Contains patient information, patient ID, name.
Auto Send Control Results – Send QC results automatically to the LIS when
complete.
Auto-Send Invalid Control – If checked, will auto send patient results if the
controls for an assay do not meet criteria
configured as single rule or multi rule in the QC
Data Entry screen.
Auto-Send Invalid Range – If checked, will auto send patient results that
are < or > the Review Range.
Auto Send Patient Results – Patient results are sent to the LIS automatically
without operator intervention. Exceptions to
this may include:
• Failed or overdue adjustment
• Failed QC and single or multi-rules is active
• Result is outside of Review Range
• Invalid result, such as Calc Error
Display Controls on LIS Screen – QC orders and results will appear on the LIS
Worklist screen.
To setup a connection between the IMMULITE and an LIS, follow the steps below:
5) Manage Results
Results must be tagged and sent to the LIS (there is no auto-send option on
IMMULITE).
Qualitative Tests
Qualitative tests result as Reactive, Non-Reactive or Indeterminate and are sent to the
LIS as follows:
Password
and ID’s
come from “Display Patients”
the LIS only should be
provider selected unless the
LIS sends orders for
control samples
Must be 4
Serial Port 4
The LIS
Parameters
screen is
password
protected;
the
password is
connect
aHB and BcM are quantitative assays
with qualitative approval in the U.S.
The instrument default sends the
numerical concentration to the LIS. If
Qualitative Only is selected, the All changes must be saved and
Instrument interprets the assay and take effect after the next login.
sends a qualitative interpretation.
5) Manage Results
Results (including semi-quantitative ratio’s) are sent using floating decimals as follows:
See assay package inserts for interpretation of qualitative assay ratio results.
Filters
information by
date and time Tagged records
highlight blue
Organizes
information
displayed
on screen
What is
displayed on
the button is
displayed on
the screen
Button for
manually Permanently
removes selected Used to temporarily
tagging and stop communication
sending results records from the
database when between the
to the LIS Instrument and the
confirmed
SMS; when re-
activated, stored
records are sent to
the LIS
Selects the
communication mode
Choose test to
set ranges on
Be sure that
ranges entered
are in the same
units as
Patient results falling displayed
outside this range are not
sent to the LIS; may be
used as a critical or alert All changes must
range for patient results be saved
* Note: Results that fall outside of the Normal Range but within the Review Range will
not be flagged high or low.
5) Manage Results
Results are sent using floating decimals as follows:
See assay package inserts for interpretation of qualitative assay ratio results.
Used to temporarily
Hi, Lo, Out,
stop communication
Adj, QC
between the
(multirules)
Instrument and the
LIS; when re-
activated, stored
records are sent to
the LIS
Sent records
Tagged records display in gray
highlight green text
To setup a connection between the SMS and an LIS, follow the steps below
Auto Send
behavior is
defined in
the Terms
section
Analogous to the
LIS Parameters – LIS log on the
most come from 2000/2500;
the LIS provider should be left on
Mode of Communication
SMS IMMULITE 2000/2500
Select the appropriate LIS mode Select Bi-Directional LIS Host Query mode.
5) Manage Results
Results are sent using floating decimals as follows:
See assay package inserts for interpretation of qualitative assay ratio results.
LIS Status
Indicator
(displays
green,
No Sample, In New Inst ID yellow or
Sort by Queue, In column red)
column title; Progress, indicates
asterisk Waiting, which
indicates Resulted or Sent Instrument
column is
sorted processing
a test order
1. Are two LIS connections needed, one for each IMMULITE® 2000/2500
connected to the SMS?
No, only one LIS connection is needed through the SMS to operate an
Immunoassay (IA) WorkcellTM. However, there are various factors that must be
considered in order to meet the CAP standard, which requires that “When
multiple identical instruments are used that they are uniquely identified such that
a test result may be appropriately traced back to the instrument performing the
test”.
When these two IMMULITE 2000/2500s are then connected to the SMS,
Siemens Diagnostics recommends a workflow evaluation to maximize efficiency
and throughput. One of the recommended guidelines is the “80/20” distribution
of onboard reagents, which recommends that the laboratory load their highest
volume tests on both Instruments so that the SMS can send sample tubes to
each Instrument in the most efficient manner possible.
If the laboratory adopts this recommendation, their LIS must be able to recognize
the unique Instrument identifier currently transmitted with the test results. This
recognition is usually done through a “data stream” transmission and not through
port identification. In this case, either the laboratory LIS specialist or the vendor
must make a modification to the LIS code to recognize the unique Instrument
identifier attached to each test result. This code change may or may not incur an
additional cost to the customer depending on who makes the change and which
vendor the customer uses.
2. What should be done if the SMS computer is not functioning and unable to
communicate with the LIS?
Although highly unlikely, if the computer fails, contact Technical Service for
assistance. The LIS cable can be moved to each IMMULITE 2000/2500 to
enable direct transmission from the LIS to the individual Instruments. When the
LIS cable is moved, it is necessary to change the baud rate on the IMMULITE
2000/2500 LIS Configuration screen from 115,200 to the baud rate
recommended by the LIS and to return the IMMULITE 2000/2500s to Non-
Integrated Mode.
3. Should the LIS cable be moved to the Instruments if the SMS Robotic Arm
is not functioning?
No. Contact Technical Service for assistance. It is not necessary to move the
LIS cable in this situation because communication with the LIS continues through
the SMS computer. Sample tubes may be sorted by test order and placed on the
appropriate IMMULITE 2000/2500 to continue processing. The IMMULITE
2000/2500 can query the LIS through the SMS computer and automatically
process test orders. See Question #5 for when to use Bypass Mode.
Bypass Mode may be used in the event of an SMS hardware issue (see question
#3) to maintain LIS communication while the SMS is serviced. It is selected as
an option from the SMS Startup screen.
6. What are the things I should consider for processing repeat tests
such as reflex tests, auto dilution tests, and add-on tests through
the LIS on the SMS Workcell?
Because the SMS is the connection to the LIS the following should be
considered when deciding how processing will be done for repeat tests:
• How the SMS is configured regarding it’s “Requery Options”
o Requery none
o Requery all
o Requery New Orders
• How the LIS is configured regarding how orders are “sent”
o Query
o Batch Download
• How the LIS is configured for “Resend Options”
o Always send
o Never resend
o Resend if no result received or verified
Note: See the Table of LIS and SMS Settings in the Appendix.
8. How do I keep the SMS from transferring sample tubes to one IMMULITE
2000/2500 so that I can troubleshoot QC issues?
To take one Instrument in an Immunoassay Workcell “off-line”, place the
IMMULITE 2000/2500 in Stop mode. From the Configurations drop-down menu,
select Instrument Mode and type in the password “sms”. Change the
configuration to Non-Integrated mode and SAVE the change. Return the
IMMULITE 2000/2500 to Run mode to troubleshoot the problem. Once the issue
is resolved, the operator must return the Instrument to Stop mode and return the
Instrument Mode to Integrated.
4. Siemens Diagnostics may provide a Field Service Engineer on the day the
Interface is launched at no charge to the customer. The MIS director and lab
director must also be available to facilitate the process.
Laboratory Responsibilities
For the duration of the initial testing and validation process, the status of the IMMULITE
system should be considered “under evaluation”. The validation process is performed
by the laboratory and the LIS developer and typically lasts about two weeks.
During the validation period, all results sent to the LIS must be verified on the LIS by
comparing results and patient information to the IMMULITE results printout. Any
problems must be reported to Siemens Diagnostics and all other affected parties.
Upon successful completion of the validation process, the system is upgraded to “on-
line” status.
The LIS 15 second timeout error appears when the IMMULITE 2000/2500 or SMS tries
to send an enquiry message to the LIS but the LIS does not respond within 15 seconds.
What actions should be taken? Contact Technical Service after asking the above
questions.
The LIS 30 second timeout error occurs when the LIS does not properly follow ASTM
specifications after initial communication, or if the LIS is expected to continue to send
information but nothing is received within 30 seconds.
A common cause of LIS 30 second timeout errors is incorrect data sent by the LIS.
Other possible causes include line noise, a malfunctioning rocket card or the LIS cable
length being greater than 50 feet.
This message informs the operator that both the LIS and the Instrument are trying to
communicate at the same time. At this point, the Instrument will allow the LIS to
communicate, and then begin its communication once the LIS is complete. No issues
should arise from this error.
There are 3 separate IMMULITE 2000/2500 and SMS errors regarding the password,
sender and receiver ID’s:
• Error # 12304 LIS – Invalid Password in Header Message
• Error # 12305 LIS – Invalid Sender ID in Header Message
• Error # 12306 LIS – Invalid Receiver ID in Header Message
Action Steps:
• Turn on the LIS log.
• Have LIS send down test orders for any patient sample.
• Contact Technical Service to inform account of expected header message
information.
Note: When the LIS log is activated on the IMMULITE 2000/2500, the error messages
disappear; however, it is still important to contact Technical Services to resolve this
issue.
• For IMMULITE Invalid Password and Invalid ID errors, the LIS vendor must help.
Error 12327
“LIS: Data is being received from the LIS or IMMULITE is already sending to the LIS”.
Usually occurs when test orders are being received and a result is ready to auto-send.
• Not a communication problem. The result will be automatically sent with the next
test result.
• May also occur if LIS timeout errors are occurring or the Instrument and LIS are
in a communication loop.
• Error 12325 – “You can only display 10,000 records at a time” is displayed.
• Simply resort the LIS screen – it cannot display more than 10,000 records.
Miscellaneous Errors
The following require review of the LIS log. Notify Technical Service.
Invalid ID
This is the #1 question asked by LIS customers. The Sender ID and/or Receiver ID is
incorrect in the header message. These items need to be switched by the LIS when
sending messages to IMMULITE.
Example:
Sender ID is set to Siemens Diagnostics
Receiver ID is set to HOSPITAL on IMMULITE
IMMULITE Sending
Sender ID field = Siemens Diagnostics, Receiver ID Field = HOSPITAL
LIS Sending
Sender ID Field = HOSPITAL, Receiver ID field = Siemens Diagnostics
Invalid Password
The password is incorrect in the header message. Correct by entering the proper
password in the LIS PARAMETER section from the START menu. Siemens Diagnostics
does not know this password, this is set by the software company. SUNQUEST does
not use a password. This field should be left blank for SUNQUEST systems.
LIS Timeout
The LIS is not responding to IMMULITE. Causes can be a cabling problem,
communication problem (hardware related), or programming bug in the LIS software
No info on this #
A response from the LIS to a Query message. The LIS has no information for the
patient sample (accession#).
12322 LIS – Record could A sent record could not Call Technical Service.
not be marked sent, be found in the database
record not found. to be sent to the LIS.
This error should not be
encountered and
indicates a
programming logic
error.
12323 Record could not be A tagged record could Call Technical Service.
sent to the LIS, not be found in the
record not found. database to be sent to
the LIS. This error may
indicate a programming
logic error.
12324 LIS – There are no The operator pressed Verify records are
“TAGGED” records to the Send or Re-Send tagged for sending.
send to the LIS. buttons on the LIS
screen, and no records
are tagged.
12325 LIS – You can only The LIS Screen has a To view remaining
display 10,000 limit of displaying records, the operator is
records at one time. 10,000 records at one required to refine the
time. The first 10,000 date and time sorting
records meeting the criteria.
sorting criteria are used.
Send/Resend All Requery None Recommended to Yes3 SMS cannot auto- Must manually order
(when LIS re-queried, (SMS will not re-query avoid resulted test retrieve sample tube repeat1 tests on
all test orders – LIS if the accession orders being resent for repeat1 testing IMMULITE 2000/2500
whether previously number is in its and rerun No4 SMS can auto-retrieve Can either leave sample
sent or not – are database) sample tube for repeat1 tube onboard SMS or
sent/resent to the testing remove it and return it
SMS) later
Send New Only Requery All Recommended to Yes3 SMS must rescan2 Must move sample tube
(when LIS re-queried, (SMS re-queries LIS for ensure all new test sample tube for repeat1 to force SMS to rescan2
only new test orders all test orders, regardless orders are sent to testing barcode
are sent to the SMS – of result status) the SMS for No4 SMS can auto-retrieve Can either leave sample
previously sent test processing sample tube for repeat1 tube onboard SMS or
orders are never testing remove it and return it
resent) later
Send/Resend Open Requery New Orders Recommended to Yes3 SMS can auto-retrieve Can either leave sample
Test Records (SMS re-queries LIS for ensure unresulted5 sample tube for repeat tube onboard SMS or
(when LIS re-queried, all test orders, but does records are never testing; remove it and return it
all open test orders – not rerun tests on rerun by the SMS later
whether previously unresulted5 records) No4 CAUTION: Ensure all
sent or not – are test results are verified
sent/resent to the before returning sample
SMS) tube to SMS or tests
may be rerun
Send/Resend All or Never Rerun Coming Soon! Recommended to Yes3 Cannot repeat the Can either leave sample
Send/Resend Open (Software revision in ensure resulted test same test order on an tube onboard SMS or
Test Records development that will orders (whether accession number3 remove it and return it
never rerun the same open or closed) are No4 later
test order on an never rerun by the
accession number) SMS
All No Re-Query Options Not necessary N/A SMS can auto- Can either leave sample
are Selected retrieve sample tube tube onboard SMS or
for repeat1 testing remove it and return it
1
Repeat testing refers to any add-on, reflex or auto dilution test orders generated by the LIS and not the Instruments.
2
Sample tubes are rescanned when placed in an SMS Drawer and the Drawer is reset; alternately, the sample tube can be placed in an unscanned
position of a Drawer and the Drawer continued.
3
LIS-generated repeat tests must receive a query to be transmitted
4
LIS-generated repeat tests are automatically downloaded without query
5
Unresulted records are either waiting to be processed, cannot process because of an error condition or are currently in progress