Beruflich Dokumente
Kultur Dokumente
JUNE, 2009
CONTENT PAGE
Abbreviation i
Acknowledgement ii
Abstract iii
CHAPTER ONE ............................................................................................................... 8
1 INTRODUCTION.......................................................................................................... 8
1.1 Synthesis of Schiff base metal complexes.............................................................. 8
CHAPTER TWO ............................................................................................................ 11
Literature review ............................................................................................................ 11
2. Schiff bases components under investigation ........................................................... 11
2.1. Amino acids .......................................................................................................... 11
2.2 NINHYDRIN ......................................................................................................... 14
2.2 1 REACTIVITY ................................................................................................ 15
2.2.2 The ninhydrin reaction with amino acids and their mechanism............... 15
2.2.3 Mechanism reaction of ninhydrin and amino acids ................................... 17
2.3 Schiff Bases............................................................................................................ 18
2.3.1 Biological Important Of Schiff Base ............................................................ 19
2.3.2 Catalytic applications of Schiff bases........................................................... 20
2.4 The chemistry of metal ions ................................................................................. 21
2. 4.1 Cobalt II) complexes ..................................................................................... 22
2.4.2 Nickel (11) complexes .................................................................................... 23
2.5 Objectives and the scope of the present studies ................................................. 24
2.5.1General objective ............................................................................................ 24
2.5.2 Specific objectives .......................................................................................... 24
CHAPTER THREE .......................................................................................................... 25
3 Materials and methodology....................................................................................... 25
3.1 Apparatus and instruments ............................................................................... 25
3.2 General procedures............................................................................................... 25
3.2.1 Synthesis of Schiff base derived from cystein with Ninhydrin ............... 25
3.2.2 Synthesis of Ruhmann’s purple.................................................................... 25
3.2.3 Synthesis of Schiff base metal complex........................................................ 26
3.2.4 Synthesis of Ruhmann’spurple metal complexes...................................... 26
3.2.5 Ruhmann’s purple metal complex of lysine and ninhydrin....................... 26
3.3 Characterization of complexes........................................................................... 27
3.3.1 Thin layer chromatography .......................................................................... 27
3.3.2 Solubility ......................................................................................................... 27
3.3.3 Melting (decomposition points) .................................................................... 27
3.3.4 Conductivity measurements.......................................................................... 27
Abs. = absorbance
UV. Vis = ultra violet visible spectroscopy
Sch. = Schiff base
Ruhm’s = Ruhmann’s purple
Λm = molar conductivity
Ω-1 = Ohm inverse
Ns = Nano semin
Ml = Milliliter
Mmol = mili mol
Cm~1 = centimeter inverse
Co = degree cent grade
gm = gram
Co = Cobalt
Ni = Nickel
ε = Molar absorbtivity
AAS = Atomic absorption spectroscope
TLC = Thin layer chromatography
Fig = figure
ii
iii
All the 20 amino acids are α– amino acids .They have a carboxyl group bonded to the
same carbon atom [the x carbon]. They differ from each other in their side chains, or R
groups, which vary in structure, size, and electric change, and which influence the
solubility of the amino acids in water.
The common amino acids of proteins have been assigned three letter abbreviations and
one letter .the general structure of amino acid:
COO-
+N3H C H
COOH COOH
H2N C H H C NH2
CH2 CH2
CH2 CH2
C O C O
NH2 NH2
L- 2-amino-4-carbamoylbutanoic acid D- 2-amino-4-carbamoylbutanoic acid
COOH COOH
H2 N C H H C NH2
CH CH
H2 C CH3 H2C CH3
H3C H3C
L-2-amino-3-methylpentanoic acid D-2-amino-3-methylpentanoic acid
H2 N C H H C NH2
CH2 CH2
SH SH
L-2-amino-3-mercaptopropanoic acid D-2-amino-3-mercaptopropanoic acid
H2N C H
H C NH2
CH2
CH2
CH2
CH2
CH2
CH2
CH2
CH2
NH2
NH2
L-2,6-diaminohexanoic acid D-2,6-diaminohexanoic acid
C6H14N2O2
Mol. Wt.: 146.188
m/e: 146.106 (100.0%), 147.109 (6.5%)
C, 49.30; H, 9.65; N, 19.16; O, 21.89
2.2 NINHYDRIN
Ninhydrin (2-2-Dihydroxylindane -1-3-dione) is a chemical used to detect ammonia or
primary and secondary amines. When reacting with these free amines, a deep blue or
purple color known as Ruhmann’s purple is evolved. Ninhydrin is most commonly used
to detect finger prints, as amines left over from peptides and proteins terminal amines or
lysine residues/ sloughed off in finger prints react with ninhydrin [4].
Ninhydrin is also used in amino acid analysis of proteins. Most of the amino acid are
hydrolyzed and reacted with Ninhydrin except proline; also certain amino acid chains
degraded. There fore separate analysis required for identifying such amino acids that
either react differently or don’t react at all with Ninhydrin. The rest of amino acids are
then quantified calorimetrically after separation by chromatography.
O
ninhydrin
Properties
Molecular formula-C9H4O3 density=1.482g/cm3
Molar mass-160.1263g/mog boiling point =338.4oc
Appreance-white powder
The carbon atom of a carbonyl bears a partial positive charge of the central carbon of a 1,
2, and 3;-tri carbonyl is less stable and more electrophilic than simple ketones. In most
compounds a carbonyl is more stable than the dihydroxy /hydrate / form. How ever nine
hydrogen is stable hydrate of the central carbon because this from does not have the
destabilizing effect of adjacent carbonyl partial- positive centers. Indane 1, 2, 3, trione
reacts readily with nucleophiles.
Note that in order to generate the Ninhydrin chromophore, the amine is condensed with a
molecule of Ninhydrin to give as Schiff base. Thus only ammonia and primary amines
can proceed past this step .at this step, there must also be an alpha proton for Schiff base
transfer, so an amine adjustment to tertiary carbon cannot be detected by the ninhydrin
test .the reaction of ninhydrin with secondary amines gives an iminum salt, which is also
colored, and this is generally yellow –orange in color.
2.2.2 The ninhydrin reaction with amino acids and their mechanism
The most important reaction of amino acids is the reactions that are utilized in the
formation of peptides and proteins. Proteins analysis requires determination of the
identity and quantity of each constituted amino acid is the major or step include:
- Hydrolyzing with acids
- Separation with chromatography
- Identification and quantification of the individual amino acids
The ketimine (the Schiff base) being of relatively greater potential because it can act ass a
tridentate ligand forming two stable five membered rings on complexation with metal
ions [6, 7]
The stability of these complexes deceases with
- increase in ring size
- increase in the length of the side chain
The metal complexes are distinctly colored. A specific correlation of metal ion amino
acid colors can thus be developed on the result which can from a basis for amino acid
identification and determination
2.3 Schiff Bases
They are compounds containing an amino or azomethine group (R-C=N-) and are usually
formed by the condensation of a primary amine with an active carbonyl compound. The
reaction to prepare Schiff base is reversible, progressing through a carbine amine
intermediate and requires the removal of water.
Schiff bases which are effective as coordinating ligands have a functional group OHNH2,
SH etc, sufficiently, near the site of condensation so as to form five or six membered
chelating ring on reaction with metal ions
-
O
R
R R'
C O + R' NH 2 C NH2+
R
R
R HO
R
H2O C N R
+ C NR H2+
- R R
Where R is H and R’ alky aryl OH, NHR and OR group Reaction mechanism for the
formation of Schiff base. Schiff bases have played an important role in the development
A wide variety of ligands may be obtained via the Schiff base condensation reactions
which vary in dent city, flexibility, and nature donor atoms, and in electronic properties.
Metal complexes of Schiff bases have varied geometries and magnetic properties.
Multidentate ligand having oxygen and nitrogen donor system reveal a number of ‘ONN’
and ‘ONO’ donor sequence which have resulted in the formation of multinuclear metal
cheated.
As the chelating function is found in different environment, they are likely to provide a
verity of donor system, like ONN, OO and ONO for efficient metal binding reactions.
2.3.1 Biological Important Of Schiff Base
Schiff base appear to be important intermediates in a number of enzymatic reactions
interaction of enzymes with an amino or a carbonyl group of the sub state .one of the
most prevalent types of catalytic mechanisms in an enzyme to form an imines, or Schiff
base [12]
Stereo chemical investigation carried out with the aid of molecular models showed that
schiff base formed between methylglyoxal and the amino groups of the lysine side chains
of proteins can bend back in such away towards the nitrogen atoms of peptide groups that
a charge transfer can occur between these groups and oxygen atoms of the schiff bases .
In this respect, pyridoxal Schiff bases derived from amino acids have been prepared and
studied. Schiff bases derived from pyridoxal and amino acids are considered very
important ligand from the biological point of view .transition metal complexes of such
ligand is important enzyme models. The rapid development of these ligand are important
and resulted in an enhanced research activity in the filed of coordination chemistry
leading to very interesting, conclusions[8].
Certain polymeric Schiff bases have been reported which possess anti tumor activity .the
schiff bases have the highest degree of hydrolysis at PH= 5 and the solubility in water it is
Tetrahedral complexes of Co (II) with 4A2 ground state are expected to have three
transitions. 4A2 4
T2, 4T2 4
T1 (F) and 4A2 4
T2 (P) low spin square planar
complexes exhibit a narrow band near 8500cm-1 and a stronger bounder band near
20000cm -1.
2.4.2 Nickel (11) complexes
Octahedral Ni (II) complexes with 3A2g ground state are expected to have three spin
allowed transitions. 3A2g 3
T1g (F) (7000-13000cm-1) 3A2g 3
T1g (F) (1000-
2000cm) and 3A2g 3
T1g (P) (19000-27000cm).
The octahedral usually consist of a bend in the 1R at 8600cm -1 with ~ 2.5, a close pair
of bands in thread (¬14000cm with 1.8) followed by a weaker band (<1) at 18500cm and
a some what stronger (~4 transition in the blue at 25500cm-1 .
In addition, two spin forbidden transitions 3A2g 1
E1g And 3A2g 1
T2g Are also
observed, the fist near the second spin allowed truncation and the other band between
second and third spin allowed transitions that is approximations around 15400cm -1 and
18500cm-1 respectively.
Tetrahedral Ni (II) complexes with 3T1g ground state, generally exhibit four transitions.
They are 3T1 3
A2, 3T1 1
E, 3T1 3
T1 (P) and 3T2 1
T1 (P) the band 3T1
1
T1 (P) is a strong the band of high intensity when compared with others.
Square planar Ni (11) complexes have three spin allowed –d bands corresponding to 1A1g
1 1 1
A2g, A1g B1g and 1A1g 1
Eg transitions are expected. The square planar Ni (II)
complexes do not have any absorption band below clearly distinguished from octahedral
and tetrahedral complexes [12].
Even if there is an absence of spectrometer instruments such as; IR, NMR,MS that can
provide substantial evidence for determination of structure of the complexes which is
formed from Ninhydrin - amino acids reactions with transition metals such as Co(II)
Ni(II) will be proposed. The following structure will be drawn based on the central view
of the nature of the ligand_metal complex
The complexes formed with Co (II) and Ni (II) is powders in nature and obtained in good
yield. As can be seen from the result data the complexes are distinctly colored; they have
different percentage yields and appearances. The elemental analysis data of the
complexes are given in tables. The analytical data matches with 1:2 metals to Ruhmann’s
purple and1:1schiff base complexes in an octahedral geometry for the complexes of Ni
(II) and Co (II).
The molar conductance (Λ m) values were calculated from conductivity measurements of
the solvent (Acetone) and a metal complex in acetone. The molar conductance values of
the products obtained from all the complexes are very small, in the range of 17.6-120Ω-1
cm-2 mol-1. These show their non-electrolyte nature.
Ninhydrin and Iso-Leucine, glutamine or lysine form a deep blue purple colored
compound known as the Ruhmann’s purple, which maximally absorbs at 20833.34 cm-1
The compound is formed via four steps; condensation, decarboxylation, hydrolysis and
further condensation. The electronic spectral data of the metal complexes are given in
table 4. The bands observed at 2000cm-1 and 21691.34 cm-1 in the complexes are
assigned to the π→π * transition of the benzene moiety. The electronic spectrum of the
Co (II) & Ni (II) complexes show common bands around 18518.5cm-1 and 20833.34cm-1
which are characteristics bands of the exocyclic azomethine chromopher.
Results obtained from Ruhmann’s purple (R1) and ninhydrin with cobalt (II) taken for
simplicity 1.Determination of molar conductivity having 10-3M
preparation of 10-3M
0.033
mole = mass ⁄molecular weight = −1
=4.95*10-5mol
666.93glmo
O O
2 N +M(II)
C 0.8g
O- O
0.5g
-
O O
N
O-
O- O
M
-
O O
O- O
From this reaction 2:1moleratio of Ruhmann's purple metal complex the following result was
obtained
0.59m 0.88
60ηgm 182.71g / mo /
0.82mmol 4.3mmol
The limiting reactant is the Ruhmann’s purple
0.59m X
=
6059mol 666.719 / mol
0.5(666.73)
X= = 0.559m
604
A.Y 0.49m
%Yield= *100 = * 100 = 72%
T /Y 0.559m
Calibration curve of Ni
0.25
y = 0.0553x
2
0.2 R = 0.9986
Absorbance
0.15
0.1
0.05
0
0 2 4 6
Concentration
0.25
y = 0.0553x
2
0.2 R = 0.9986
Absorbance
0.15
0.1
0.05
0
0 2 4 6
Concentration