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CHAPTER 1
AMPERE A. TSENG
Department of Mechanical and Aerospace Engineering,
Arizona State University,
Tempe, Arizona 85287-6106, USA
C. C. KUO
Department of Physics, National Sun Yat-Sen University,
Kaohsiung, Taiwan, 804, ROC
Over the last decade, scanning probe microscopy (SPM), including scanning tunnel-
ing microscopy (STM) and atomic force microscopy (AFM), has become a powerful
manipulation technique by virtue of its ability to interact with individual adsorbed
nanoparticles with nanoscale precision on the surface. In this article, the principles,
procedures and applications of both STM and AFM-based technologies for manip-
ulation of atoms, molecules, and nanoclusters are reviewed with an emphasis on
their ability to create a wide variety of nanostructures. In the manipulation of sin-
gle atoms and molecules, the interaction among the atoms/molecules, surface, and
tip are specifically discussed first. The approach for positioning the atom/molecule
from and to the desired locations and precisely controlling its movement is also elab-
orated for each specific manipulation technique. The applications of these techniques
for fabricating different nanostructures and nanosystems are then presented. In the
manipulation of nanoclusters, different nanocluster-substrate pairs in different envi-
ronments with their potential applications in electronics, biology, and medicine are
specifically evaluated. Finally, concluding remarks are provided, where the scopes
for technological improvement and future research are recommended.
∗ Corresponding
author: Department of Physics, National Central University, Chungli, Taiwan
32001, ROC; mfl28@fermi.phy.ncu.edu.tw
1
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2 A. A. Tseng et al.
CONTENTS
1. Introduction 2
2. Manipulation by Scanning Tunneling Microscope (STM) 3
2.1. Manipulation of Atoms by STM 6
2.2. Manipulation of Molecules by STM 9
2.3. Manipulation of Nanoclusters by STM 12
3. Manipulation by Atomic Force Microscope (AFM) 19
3.1. Manipulation of Single Atoms by AFM 20
3.2. Manipulation of Single Molecules by AFM 21
3.3. Manipulation of Nanoclusters by AFM 22
4. Concluding Remarks 26
Acknowledgments 27
References 27
1. Introduction
Many of the devices and systems used in modern industry are becoming progres-
sively smaller and have reached the scale of nanometers. Nanofabrication is playing
an ever increasing role in building these devices and systems as well as under-
standing the associated characteristics and functionality at the nanoscale. In gen-
eral, nanofabrication consists of two major approaches: top-down high-resolution
and bottom-up directed building processes [1]. The top-down approach has evolved
from the conventional lithographic technology, which is the de facto standard used
in the semiconductor industry. This approach takes a bulk material, and modifies
or breaks it into smaller desired structures and normally involves removing or etch-
ing out (sometimes with forming or adding) some materials to make the final ones.
As an alternative to the top-down approach, interest has shifted to the bottom-
up approach, in which the materials of atom or molecular scales serve as building
blocks, for next generation nanoscale devices and systems.
The ultimate bottom-up approach to nanofabrication is the precise control over
single atoms and nanoscale particles for the formation of nanostructures, also known
as nano-manipulation. In the past decade, scanning probe microscopes (SPM), or
more precisely, scanning tunneling microscopy (STM)-based technology has become
an increasingly popular tool for manipulating matter at the atomic and molecular
level because the tunneling current involved can selectively break chemical bonds
and/or induce chemical association among the atoms. Originally, SPM has been used
to gain knowledge of surface morphology and molecular organization in the fields
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of physics, chemistry, and biology. Currently, SPM has enjoyed widespread accep-
tance in many areas of nanotechnology, including surface imaging, metrology, spec-
troscopy and lithography [2, 3]. In this article, an overview of recent developments in
the SPM technology for the manipulation of atoms, molecules, and nanoclusters is
presented, focusing on its ability in creating a wide variety of nanostructures. Here,
a nanocluster is a cluster of atoms or molecules whose characteristic dimensions are
a few nanometers. On one side, it overlaps with the structure of nanocrystal, and
with (macro)molecule on the other end. Nanoclusters are typically smaller struc-
tures than nanocrystals and are important building blocks for functional materials
and devices.
SPM-based manipulation involves two major techniques: scanning tunnel-
ing microscopy (STM) and atomic force microscopy (AFM). The principles and
approaches of each technique are introduced and evaluated separately with emphasis
on their abilities, efficiencies, and reliabilities to engineer structures with nanometer
resolutions. The nanostructures made by different techniques are specifically pre-
sented in order to illustrate the versatility and advancement of these SPM-based
techniques. The major variances as well as the associated strengths and weaknesses
for the different techniques evaluated are examined. The potential applications for
specific techniques and the uniqueness of the fabricated nanostructures are also
discussed. Finally, prospective developments and research focuses for SPM-based
techniques are presented.
In general, AFM is less restrictive than STM, because AFM can be performed
in a normal room environment and can be used to image any kind of material.
However, because the underlying principle and configuration of each technique are
different, STM can be controlled at higher resolutions with a lower scanning speed
while AFM can have higher speeds but lower resolutions. As a result, STM has
the ability to manipulate single atoms with sizes at a subnanometer level, while
AFM is normally used to manipulate particles, including macromolecules and nan-
oclusters with sizes ranging between 10 and 100 nm. In addition to manipulation,
both STM and AFM have been used for material modification (including resist
exposure), material addition (mainly induced deposition), and material removal
(including etching) at nanometer scales. Although these applications are important
in nanofabrication, they are beyond the scope of this article. The details of these
applications can be found in recent review articles by Tseng, Notargiacomo and
Chen [2] and Tseng [4].
4 A. A. Tseng et al.
Figure 1. Schematic of controlling parameters between tip and adparticle on the surface in scan-
ning tunneling microscopy (STM).
on the sign of the bias voltage as shown in Fig. 1. The exponential dependence
of the distance between the tip and target gives STM its remarkable sensitivity
with sub-angstrom precision vertically and sub-nanometer resolution laterally. Two
basic modes of operation, known as constant height and constant current modes
are usually used for imaging. In the constant height mode, the tip travels in a
horizontal plane above the sample. The induced tunneling current, which depends
on topography and the electronic properties of the local surface, constitutes the
STM image. In a constant current mode, the tip height is adjusted by feedback
signals to keep the tunneling current constant during scanning, and the variation
of the tip height represents the image.
In operating STM, the tip will approach the sample surface until the set-point
current is reached (at a given bias voltage). An adsorbed atom, molecule or nanoclus-
ter, which is hereafter referred as an adparticle, is held on the surface by chemical
bonds with the surface atoms. In an imaging mode, the distance between the tip
apex atom(s) and adparticle is far enough such that any forces between them are
negligible as compared to the forces binding the adparticle with the surface, and
the adparticle is not disturbed by the passage of the tip over it. However, if the
tip-adparticle distance is gradually decreased, the tip-sample interaction changes
from the conventional tunneling regime to the electronic-contact regime and then
to the mechanical-contact regime [6, 7]. In the manipulation mode, the tip is in
close proximity of the surface such that the adparticle bonds to the tip as shown in
Figs. 2(a) or 3(a). It implies that by varying the distance between the STM tip and
the sample, a force may be exerted on the nanoparticle adsorbed on the surface.
A controlled manipulation experiment can thus be performed by lowering the tip
towards the target adparticle to enhance the tip-adparticle interaction to overcome
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Figure 2. Schematic of lateral manipulation (LM), in which adatom remains bound to surface
and pushed or dragged by STM tip: (a) pulling where adatom discontinuously follows tip from one
adsorption site to another due to attractive forces, (b) sliding where adatom is trapped under tip
and follows its motion instantaneously and continuously, (c) tip is retracted at desired place.
the forces between the adparticle and the surface. By adjusting the tip position
and reducing bias voltage, and/or increasing the tunneling current, it is possible
to adjust the magnitude and direction of the force, so that the tip can either push
or drag an adparticle across a surface while the adparticle remains bound to the
surface (Fig. 2(b)). This process is known as lateral manipulation (LM), normally
defined in terms of pulling, sliding or pushing, depending on the type of interac-
tion that is used between the tip apex and adparticle (attractive for pulling and
sliding and repulsive for pushing) [8]. As shown in Fig. 3, the adparticle can also
be picked up by the tip and relocated to another position with the assistance of
the electric fields from the STM tip to increase or reduce the tip-adparticle inter-
action. This process is called vertical manipulation (VM). At any point in the scan
after such an operation, the tip can be retracted to the imaging distance by reset-
ting the bias voltage and/or set point current to the imaging values, which thereby
terminates the attractive interaction between the adparticle and the tip as shown
in Figs. 2(c) and 3(c). These two manipulations require extremely fine control of
the local interactions among the tip, adparticle, and surface. In general, it requires
less force to move an adparticle along the surface by lateral manipulation than to
pull it away from the surface using vertical manipulation. A schematic description
of these interactions and the controlling parameters involved are also illustrated
in Fig. 1.
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6 A. A. Tseng et al.
Figure 3. Schematic of steps in vertical manipulation (VM), in which adatom is transferred from
surface to STM tip and back to surface: (a) tip picking adatom from adsorption site and adatom
dissociation occurring, (b) tip lifting adatom from surface and moving to desired place due to
attractive forces, (c) tip with adatom is loaded at desired site.
Figure 4. STM image of lateral manipulation of xenon atoms on nickel(110) surface by STM in
writing company logo of “IBM” (courtesy of IBM Research, Almaden Research Center).
Figure 5. STM image of atomic manipulation of iron atoms on copper(111) surface in writing
Chinese characters for “atom” by C. P. Lutz and D. M. Eigler, to which the literal translation is
something like “original child” (courtesy of IBM Research, Almaden Research Center).
8 A. A. Tseng et al.
rate is a power-law function of the tunneling current (I). For the specific experiment
conditions considered, i.e., the voltage (V) ranges from 18–180 mV with a tunneling
junction such that V/I = 906 kΩ± 2%, and the transfer rate varies I4.9±0.2 . Lyo and
Avouris [14] have also shown that voltage pulses can be used for vertical manip-
ulation by extracting atoms from a Si(111) surface to the tunneling tip and then
depositing them elsewhere using an opposite polarity pulse. They noted that the
atom motion was in the same direction as the electron motion. Later, Shen et al. [15]
also observed that the transfer of atomic H to Si surfaces at relatively low voltages
is strongly power-law dependent. This reversible field (electron)-induced transfer of
a single atom is also known as the Eigler switch [16]. This transfer phenomenon
has been studied theoretically by many investigators [16, 17, 18]. Basically, the
atom transfer in Eigler switch can be viewed as a potential-barrier crossing problem
between the potential wells formed by the interaction of the atom with the tip and
the sample, respectively. The main mechanism behind the transfer is that the cur-
rent excites the atom vibrationally in the double-well potential, sustained by the
van der Waals attraction to surface and tip. The bond is broken by overcoming the
potential barrier by gaining energy from the tunneling electrons. Also, the Xe atom
dissipates energy to the surface phonons, so that the competition between the dis-
sipation to surface phonons and the “heating” by inelastically tunneling electrons
should be included in the mechanism. The theoretical predictions generally agree
very well with the experimental findings, especially the bond-breaking rate being
consistent with the power-law dependence transfer rate.
The electric-field driven vertical-manipulation mechanism has also been used
by Salling and Lagally [19] to extract individual atoms from Si(100) surfaces to
form nanometer scale rectangular pits. Later, using multiple vertical manipulations,
Salling, Kravchenko, and Lagally [20] could write nanoscale trenches in Si (100)
surfaces with a 2.4 nm resolution from Si films that are only three atomic-layers
thick. Recently, by studying the dynamics of a single cobalt (Co) atom, Stroscio
and Celotta [21] have concluded that, at low tunneling voltages (less than 5 meV),
the transfer rate between sites is independent of tunneling voltage, current, and
temperature. At higher voltages, the transfer rate exhibits a strong dependence on
tunneling voltage, indicative of vibrational heating by inelastic electron scattering.
Adatoms can not only be laterally manipulated from the surface sites, but also
extracted or vertically manipulated from more strongly bound intrinsic sites to cre-
ate atom-vacancy pair atoms. The differences between the forces involved in lateral
and vertical manipulations have been analyzed by Pizzagalli and Baratoff [22].
Normally, stable nanostructures consisting of adsorbed atoms can only be cre-
ated at low temperatures because the mobility of the adatom can be greatly reduced.
Thus, the adatoms become controllable and atomic/molecular manipulation can be
performed nearly frozen. The instrumental effects including piezo hysteresis and
thermal drifting can also be minimized at low temperatures. For example, the typ-
ical 24-hr drift can be less than a few Å for temperatures at a few K, which is
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10 A. A. Tseng et al.
of the tip and get lost. The successful creation of the nanostructure shown in Fig. 6
can be attributed to the proper choice of the orientation of the surface. As shown,
the parallel “valleys” (from the top to the bottom in Fig. 6) of the Cu(211) surface
can act as “railways”, in which the CO adsorbed at the upper part of the intrinsic
step edges can be pushed along the railway trails.
Jung et al. [29] applied lateral manipulation of bulky hydrocarbon molecules at
room temperature. This hydrocarbon group can maintain sufficiently strong inter-
actions with the surface to prevent thermally-activated diffusion at room temper-
ature, but nevertheless allow controllable manipulation. Gimzewski and Joachim
[30] have demonstrated that the manipulation of single molecules at room temper-
ature is also feasible; they have exploited the strong interaction with the surface
shown by macromolecules such as porphyrins. Furthermore, on the field of increas-
ing the throughput and patterning speed, it is worth mentioning the “automated
atom assembly” approach of Stroscio et al. [31] in which they performed bottom-
up fabrication of nanostructures by providing the STM with computer-controlled
capabilities of lateral displacements of atoms. Most manipulations are performed
under the constant current mode, but the constant height modes have also been
used for manipulation of complicated molecules [32].
In molecular manipulation, an interesting phenomenon called “molecule cas-
cades” has been discovered. It is similar to a row of toppling dominoes. Heinrich
et al. [33] arranged CO molecules on Cu (111) at low temperature in staggered
chains of dimmers, where moving one molecule with the STM tip causes the subse-
quent motion or hopping of another, and so on. The hopping rate of CO molecules in
cascades was found to be independent of temperature below 6 K and to exhibit a pro-
nounced isotope effect, hallmarks of a quantum tunneling process. These molecule
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cascades could have many potential applications. For example, logic gates and other
devices can be implemented by engineered arrangements of molecules at the inter-
sections of cascades. Heinrich et al. [33] have demonstrated that these molecule
cascades could be arranged into logic circuits such as one-time logic AND gates and
two- and three-input sorters which incorporate logic AND and OR functions.
In vertical manipulation, the molecular flipping during vertical transfer of CO
molecules from a Cu surface to the tip has been studied by many investigators. As
indicated by Ishi, Ohno and Viswanathan [34], CO stands upright on metal surfaces
with the carbon atom binding to the substrate. As the CO molecules have a sim-
ilar absorption geometry to isolated Cu atoms adsorbed on a Cu surface, the CO
molecule turns around when being transferred up to the tip. This additional degree
of freedom associated with CO molecules makes the vertical manipulation of CO
more complicated and less predicable than that of single atoms. To have a predica-
ble or reliable vertical manipulation procedure, Bartels, Meyer, and Rieder [35] have
found that the tunneling voltage must be slowly ramped to zero and the tip-CO dis-
tance should be simultaneously reduced to compensate the decrease in the current.
In vertical manipulation, Bartels, Meyer, and Rieder [35] reported that the pickup
of a single CO molecule can be applied for enhancing the ability of the STM tip.
The sharpness of the STM tip can be greatly increased by deliberately transferring
a molecule (or atom) to the normally etched tip apex. Thus, the image contrast can
be improved. Additionally, the molecule-(or atom-) attached tip can have better
chemical contrasts in molecular recognition imaging. For example, a CO-attached
tip can distinguish between the adsorbed CO molecules and oxygen atoms relatively
easily, which look very similar to the bare etched metal tip. Furthermore, the pickup
step in vertical manipulation can be used as a material removal process for mak-
ing various molecular structures such as nanotrenches, mentioned in the section on
manipulation of single atoms. Also, the loading step in vertical manipulation can
act like a material addition process. Theoretically, a three-dimensional molecular
assembly can be built step by step using either material removal or material addition
processes. The vertical manipulation is also capable in transporting the molecules
(or atoms) across substrate obstacles, which should be difficult to perform by lateral
manipulation.
STM manipulation of atoms and molecules has been used to create various arti-
ficial structures at the nanoscale and these structures can be in situ characterized
and modified by using the tunneling electron current for rotations, diffusional jumps,
vibrational excitations, desorption, dissociation. As indicated by Rieder et al. [36],
by tuning the voltage into the energy levels of specific vibrations or electronic lev-
els, new opportunities for making molecular engines and switches become possible.
Iancu, Deshpande, and Hla [37] found that two conformations of isolated single
TBrPP-Co molecules on a Cu(111) surface can be manipulated or switched with-
out altering their chemical composition by applying +2.2 V voltage pulses from a
STM tip at 4.6 K. As a result, two different Kondo temperatures, which can act
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12 A. A. Tseng et al.
Figure 7. STM images showing removal of Co clusters by reducing bias during scanning: (a)
Co clusters grown on ordered Al2 O3 /NiAl(100) surface (bias = 2.4 V and tunneling current =
0.8 nA), (b) zoom-in image of square area shown in Panel (a), where bias was lowered to different
values with I = 0.8 nA during scanning, (c) same surface region as in Panel (a) after removal of Co
clusters scanned with the same imaging parameters (2.4 V, 0.8 nA). The inset cartoon illustrates
the procedure.
the figure images that where the bias is above the threshold value, the Co clusters
are in fixed and well-defined locations. On the contrary, the regions where the bias
is below the threshold value have no Co clusters. When a higher tunneling current
is set, a higher threshold bias can be found. For instance, when 1.6 nA was used as
the set point current, the threshold bias was found to be 1.6 V.
Following the approach described above, the desired Co-cluster patterns can be
engineered as shown in Fig. 8. Figures 8(a) and 8(b) show that specific clusters
are pulled out from the edge of the crystalline regions to create voids or cavities in
the pattern. The arrows shown in Fig. 8(a) stand for the process, in which the tip
was first moved over the specific clusters (the end sides of the arrows) and brought
close to them, by reducing the bias, to induce the motion of the Co clusters, and
the tip was translated to the other location to remove them from the pattern.
Figure 8(c)–8(e) shows that a long cluster chain can be trimmed and cluster chains
with various lengths can thus be fabricated. Figure 8(d) is a zoomed in image of
Fig. 8(c) and Fig. 8(e) is the image after the trimming processes denoted by the
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14 A. A. Tseng et al.
Figure 8. STM images of cluster patterns engineered by STM manipulation: (a) before creation
of cavity by removing specific Co clusters, (b) after removing specific Co clusters to create cavity,
(c) before trimming long Co clusters chain on crystalline Al2 O3 strip, (d) zoom-in image of square
area shown in Panel (c), (e) after trimming the chain, where condition of 0.8 V and 0.8 nA was
used for removing Co clusters and 2.4 V and 0.8 nA were used for imaging.
arrows in Fig. 8(d). Such manipulation processes typically do not damage the oxide
support, evident by the remaining oxide protrusion structures after cluster removal,
as shown in Fig. 9(a). However, in a few cases, lowering bias below threshold value
brings the tip so close that the tip removes not only clusters but also oxide film.
Figure 9(b) shows that the oxide film grown at the NiAl step was removed along
with the clusters.
At low Co coverage, the Co nanoclusters can be pulled or pushed on the crys-
talline Al2 O3 surface by the STM tip. Figure 10 shows the Co clusters in the square
area pushed or pulled along the protrusion stripes (the tip moves from bottom
upward). After the processes, the clusters were moved to the middle part of the
square area. Although we observed that the tip pulls or pushes the Co clusters on
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Figure 9. STM images showing clusters and oxide films removed by STM tip with bias below
threshold value (bias = 2.4 V and tunneling current = 0.8 nA): (a) Co cluster rows removed from
long clusters chains, (b) clusters and oxide films removed, in which oxide film grown at step of
NiAl substrate. In the region indicated by square in Panel (b), 0.8 V bias was used.
Figure 10. STM images of movement of Co clusters (0.15 ML coverage) on crystalline Al2 O3
surface by pulling or pushing with STM tip: (a) before moving clusters, (b) after movement, where
cluster number after movement is not the same, indicating that some are adsorbed on the tip.
Images were obtained at 2.4 V and 0.8 nA.
the oxide surface, in most cases the clusters are attracted and adsorbed on the tip,
indicated by the fact that the number of clusters before and after manipulation
is not the same. Adsorbing too many clusters sometimes causes multi-tip effect or
deteriorates the imaging, as shown in Fig. 11. The image quality can be regained
simply by removing the adsorbed clusters from the tip. These adsorbed clusters can
be relocated on the surface by simply reversing the bias polarity when the tip is
brought closer to the surface. Figure 12 demonstrates that we picked up a Co cluster
from the crystalline Al2 O3 surface and relocated it to the amorphous region. It is
worth noting that the size of the Co clusters unloaded from the tip remains similar
to those on the surface.
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16 A. A. Tseng et al.
Figure 11. STM images of multi-tip effect due to Co clusters adsorbed on tip: (a) before manip-
ulation, (b) after manipulation, where bias = 2.4 V and tunneling current = 0.8 nA were used in
manipulation.
Figure 12. STM images of relocation of specific Co cluster from crystalline Al2 O3 to amorphous
region, where cluster removed is indicated by circles and insets manifest void creation after remov-
ing the specific cluster: (a) before picking up the cluster, (b) after relocating it on the amorphous
region. Both images were obtained at 2.4 V bias and 0.8 nA tunneling current.
[18, 50]. Here, the electron field provides a directional driving force to transfer the
cluster in the desired direction. The cluster is unloaded after reversing the bias
polarity [51]. In line with the argument, the STM tip may not remove the clusters
while competing with much stronger cluster-oxide interactions, such as Pt clusters
on ordered Al2 O3 /NiAl(100).
Many groups have been devoting significant efforts to manipulation of metal-
lic nanoclusters on silicon single-crystal surfaces because of silicon’s importance
in the microelectronics industry and the hope that hybrid organic devices can
be integrated with existing silicon technology. Meanwhile, the manipulation of
metallic nanostructures on a clean reactive silicon surface has been considered
unfeasible for reasons of surface wetting and strong interface bonding. Pretreat-
ment to the clean silicon surface is hence necessary to achieve manipulation.
By using the buffer-layer-assisted growth technique, Chey, Huang, and Weaver
[52, 53] have demonstrated controlled manipulation of Ag, Cu and mixed Ag-Cu
nanoclusters on an Si(111)-(7×7) surface. The buffered (60–300 ML thick layer
of Xe) Si surface is used to deposit Ag and Cu atoms, and the Ag and Cu
adatoms are sufficiently mobile on Xe to form nanoclusters. Unwanted Ag nan-
oclusters were removed by laterally pushing the nanoclusters with the STM tip
using the following two approaches. In the first approach, fast approach mode,
a large area was scanned to derive the image and then a single line scan was per-
formed over the desired feature with a fast scan speed (>10 µm/s), so that the feed-
back could not respond, to establish contact between the nanocluster and the tip
to remove the Ag nanocluster. The second approach is typical, involving a line scan
at a slower scan speed (∼0.1 µm/s) with the feedback disabled. These manipula-
tion results were dependent on the competition of bonding strengths of nanoclusters
with the substrate and the tip. For instance, these Ag nanoclusters with height more
than 12 nm (∼200000 atoms) could not be moved, as the cluster-substrate contact
area, determining the number of Ag-Si bonds and thus the adhesion force, depends
on the nanoclusters’ sizes [52]. In addition, for Cu nanoclusters on Si(111)-Ag and
even Ag nanoclusters on Ag(111) substrates, where the nanocluster-substrate inter-
action is stronger, the manipulation was not successful. In some cases, such as Mn
clusters on C60 terminated Si surfaces, the clusters can be removed and transferred
to the tip but cannot be released from the tip [54].
Hydrogen-terminated Si surfaces are another kind of popular silicon support for
cluster manipulation. Butcher et al. have demonstrated that by scanning at either
large negative tunneling current or high positive bias voltage, it is possible to remove
Ag nanoclusters from hydrogen terminated Si(100) surfaces [55]. By lowering tun-
neling impedance below a threshold value, individual Ag nanoparticles could be
controllably slid across the H-passivated Si(111) surface or picked up by the tip and
subsequently re-deposited by applying an appropriate voltage pulse [56]. On the
same H-terminated Si(111) surfaces, the manipulation can also be applied on Au
nanoclusters prepared by means of field-induced transfer of Au tip material, but
was restricted to the Au nanoclusters deposited by using relatively low-amplitude
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18 A. A. Tseng et al.
voltage pulses (<+8 V) [57]. Higher voltage pulses lead to the formation of an
Au-Si alloy. Furthermore, it was observed that upon traversing the tip through a
wet chemically prepared CdS nanocluster agglomeration, several individuals can be
removed to form a desired structure [57].
Chemically passivated nanoclusters are also tried for such manipulation. For
instance, it has been demonstrated that chemically passivated Au nanoclusters
deposited on a highly oriented pyrolytic graphite (HOPG) surface can be manip-
ulated in a controlled way by using appropriate tunneling parameters [58]. In the
cleared area after removal of these C12 H25 S coated Au clusters, fragments result-
ing from the cluster dissociation process were observed. These fragments could be
laterally displayed by further high current tunneling [58].
All examples discussed above were carried out in an ultrahigh vacuum (UHV)
condition. For realistic applications, attempts have been made to perform such
manipulation at ambient pressure. Ohgi, Sheng, and Nejoh, [59] have demon-
strated that lower-density Au nanoparticles supported on self-assembled monolay-
ers (SAMs) of octanedithiol (HS(CH2 ):SH:C8 S2 ) molecules formed on an Au(111)
surface can be removed easily with lower bias and higher tunneling current than
the imaging ones, although the manipulation is difficult at coverages above 1 ML.
Rolandi et al. [60] have shown that alkanethiol-coated Au nanoparticles on HOPG
substrate can also be removed by scanning at low bias voltages. Coulomb blockade
was found to be the reason why the tip attracts nanoclusters at low bias voltage.
The results for the manipulation in ambient conditions are not abundant; however,
they have implied the possibility to succeed. Table 1 summarizes the successful
attempts to manipulate nanoclusters on different surfaces.
Figure 13. Schematic of AFM tip positions in the imaging and manipulation modes: (a) in imaging
mode, lateral attractive van der Waals forces are sufficiently weak to avoid contact between tip and
adparticle, (b) in manipulation mode, tip is in contact with adparticle, which is pushed laterally.
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20 A. A. Tseng et al.
Using disabling the feedback loop and advancing the tip into contact with the par-
ticle (Fig. 13(b)), the tip can move laterally to push the adparticle to a predefined
position on the surface. In this section, the applicability of AFM for manipulation
of single atoms, molecules, and nanoclusters is described and assessed.
Figure 14. AFM image (7.7 × 7.7 nm2 image size) of atom inlaid letter “Sn” by rearranging Sn
atoms on Ge(111)–c(2 × 8) surface at room temperature with cantilever oscillation amplitude of
15.7 nm, using Si cantilever of 29.5 N/m spring constant, setting frequency shift value of −4.6 Hz
with respect to first-mechanical resonant frequency of 160 kHz (courtesy of Dr. Oscar Custance of
Osaka University, Japan).
22 A. A. Tseng et al.
probably the presence of undesired interactions between the AFM tip and surface,
including van der Waals, electrostatic and adhesion forces. Also, the non-specificity
of the attachments, residuals, and molecules often occurs between the tip and sur-
face [68]. Although many efforts have been made to manipulate single moleculates
with AFM, all are with limited success. For example, Chyan et al. [69] have used
the mechanical forces exerted by AFM to initiate the unfolding transition of indi-
vidual protein molecules for the characterization of the unfolding and refolding
processes. However, actually sliding the molecule to the desired location in a sta-
ble and controllable manner is still unachievable. Recently, Hobbs and Kantorovich
[70] theoretically studied the response of a C60 molecule imaged by an AFM on an
insulating surface in an UHV environment and showed that it is possible to identify
the intramolecular features of the molecule. Their results may lead to successful
manipulation of the molecule using NC-AFM.
Figure 15. Sequence of AFM images (670 nm by 670 nm) of positioning 50-nm Au particle into
gap between Au/Ti electrodes, where heights of particles and electrodes are 30 nm (courtesy of
Prof. T. Juno of Lund University, Sweden).
24 A. A. Tseng et al.
Figure 16. AFM images of lateral manipulation of 24-nm Au nanoparticles to create chain-like
nanostructure by FM-AFM: (a) pushing nanoparticles labeled with 2 and 3 along direction shown
by arrows, (b) nanoparticles 2 and 3 are pushed close to nanoparticle 1, (c) moving nanoparticle
4 towards nanoparticle 1, (d) final chain-like nanostructure.
Figure 17. AFM images (2500 nm × 2500 nm) showing removal of a lipid vesicle supported on
lipid membrane/mica using AFM manipulation technique: (a) before the vesicle pushed by AFM
tip, where an arrow indicates tip’s movement, (b) after push.
coated native SiO2 surface grown from Si substrate can be precisely translated by
mechanical pushing in aqueous and non-aqueous (ethanol) environments. Through
this procedure, the desired two-dimensional structures were fabricated [82]. More-
over, the AFM tip has been used to move bio-related materials. Figure 17 shows that
a lipid vesicle on a lipid membrane supported on mica was pushed by the AFM tip to
a desired location. These results are important as they imply potential applications
in growing bio-inspired fields, such as biophysics and biomedicine. Table 2 summa-
rizes the major attempts to manipulate nanoclusters on different surfaces by AFM.
26 A. A. Tseng et al.
4. Concluding Remarks
Scanning probe microscopy (SPM) is an essential tool for creating a variety of nanos-
tructures using the bottom-up approach. This article has selected and reviewed two
major manipulation technologies within the family of SPM lithography using scan-
ning tunneling microscopy (STM) and atomic force microscopy (AFM) as well as
the AFM based dip-pen technique. The principles, procedures, achievements and
potential for each manipulation technique have been presented. In particular, a wide
variety of nanostructures manipulated by these techniques have been presented to
specifically illustrate their respective feasibilities and limitations.
Both lateral and vertical manipulations can be performed by STM and AFM. In
general, STM has achieved manipulation and positioning of a wide range of single
atoms and molecules on a surface, while AFM can be performed in room environ-
ment and is more popular in manipulation of nanoclusters. This suggests that STM
perhaps achieves the ultimate resolution of atom-by-atom control of the surface, i.e.,
in subnano levels, while AFM is more practical in operating at a nanoscale level
only. Many researchers have attempted to implement this level of control into mak-
ing actual components and devices mentioned in the text, including, nanomechnical
switches made by Junno et al. [75], molecular logic circuits developed by Heinrich
et al. [33], molecular engines suggested by Rieder et al. [36], and molecular switch
presented by Iancu, Deshpande, and Hla [37], and molecular wire-electrode systems
reported by Grill and Moresco [38]. The remaining challenge will be transferring
such fine manipulation-related components or devices into usable semiconductor or
electronic systems. In addition, manipulation possibilities of nanoclusters on syn-
thetic surfaces [62] and in liquid environments [82] for nano-fabrication constitute
further experimental challenges very worthwhile to pursue for high-density informa-
tion storage systems and biomedical applications. As a result nanoscale manipula-
tion has a great potential for providing necessary nanoscale devices and systems
for the sustained evolution of electronic, photonic, biomedical, and nanosystem
industries.
In STM, three different interactions between the tip and sample, including direct
atomic attraction forces, tip-induced electric field, and inelastic scattering by tun-
neling electrons have been identified and studied as the original sources for the
manipulation. In most of the earlier experiments, only one type of these interaction
sources was employed. In more recent studies, however, techniques have been devel-
oped to integrate one type of the interaction sources with another in manipulation
of single atoms/molecules. In this way, a large numbers of nanoparticles can be
manipulated and eventually assembled in specific geometries. As a result, nanoscale
devices and systems can be constructed from these basic building blocks. In AFM,
it offers a room environment manipulation, while the whole manipulation process
can be imaged in real time. As a result, AFM manipulation would be relatively
easier to be performed and controlled. More detailed comparison between STM and
AFM used in nanofabrication can be found in Tseng, Notargiacomo, and Chen [2].
January 14, 2008 9:23 spi-b526 Nanofabrication 9.75in x 6.5in Ch01
However, from an industrial point of view there are some downsides to the SPM-
manipulation technique. It is limited to certain combinations of nanoparticles and
surfaces. Frequently, the experiments are performed blindly and the manipulation
parameters are optimized by a trial and error method. The interaction between the
SPM tip and adparticle is complex but a thorough understanding of such inter-
actions and the mechanism involved in the manipulation process is demanded, in
order to perform the manipulation process in an entirely controlled manner. Another
major obstacle in the SPM-manipulation is a serial process with low throughput.
To increase throughput, multi-tip arrays and massively parallel algorithms have to
be developed as those reported by Eleftheriou et al. [83]. Finally, the manipula-
tion techniques have developed many new applications in their own right and many
new capabilities have been evolved to complement the existing nanofabrication pro-
cesses. This powerful SPM-manipulation tool should offer significant opportunities
for different applications in next generation nanotechnology and is on the verge of
having a revolutionary impact in a wide range of industries.
It is worth pointing out that the motivation of this article is not to present an
exhaustive review of all significant work in this field. A selection of topics and papers
to be cited is necessary and is made without the intention of excluding valuable ones
who gave important contribution to the development of SPM manipulation.
Acknowledgments
The authors would like to thank the US National Science Foundation under Grant
No. DMI-0423457, the ROC National Science Council under Grant No. NSC 94-
2112-M-008-032, the ROC Ministry of Economic Affairs under Grant No. 93-EC-
17-A-09-S1-022, and Pacific Technology of Phoenix for their financial supports. The
useful information and suggestions in preparing this manuscript from Dr. Zhuang
Li of Changchun Institute of Applied Chemistry, Changchun, China, Dr. Oscar
Custance of Osaka University, Osaka, Japan, Professor Karl-Heinz Rieder of Swiss
Federal Laboratories for Materials Research, and Duebendorf, Switzerland, Dr. Ger-
hard Meyer of IBM Zurich Research Laboratory, Rüschlikon, Switzerland, should
be specifically acknowledged. The authors would also like to express their gratitude
to Messrs Christopher T. Wassam of Arizona State University and K. L. Lin of
National Sun Yat-Sen University for their assistance in preparing this manuscript.
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