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Summary
Mycobacterium strain FA4T was isolated with fluoranthene as the single carbon source from soil of a for-
mer coal gas plant, polluted with polycyclic aromatic hydrocarbons. The physiological properties, fatty
acid pattern, and the 16S ribosomal RNA gene sequence indicated membership to the genus Mycobac-
terium, but were different from all type strains of Mycobacterium species. Based on comparative 16S
rRNA gene sequence analyses strain FA4T could be assigned to the Mycobacterium neoaurum taxon
showing 98% sequence similarity to M. diernhoferi as its closest neighbour. The occurrence of epoxymy-
colate in the cell wall differentiates FA4 from all members of this taxon which synthesize wax-ester my-
colates in addition to alpha-mycolates. Strain FA4T is able to degrade aflatoxin B1. This biological at-
tribute might be useful in biological detoxification processes of foods and feeds. From the investigated
characteristics it is concluded that strain FA4T represents a new species, for which we propose the name
Mycobacterium fluoranthenivorans sp. nov. The type strain of Mycobacterium fluoranthenivorans is
FA4T (DSM 44556T = CIP 108203T).
Key words: Mycobacterium fluoranthenivorans sp. nov. – polycyclic aromatic hydrocarbons – fluoran-
thene – aflatoxin B1 – degradation
Introduction
Among toxic waste product degrading bacteria, nu- grows with fluoranthene as the only carbon source, but
merous strains from the genera Rhodococcus and My- co-oxidizes other PAH’s during growth with fluoran-
cobacterium have been isolated from the environment thene.
and were described in detail [6, 7, 12, 13, 16, 27]. Some Aflatoxins with the naturally occurring subgroups B1,
of these organisms are able to degrade chlorinated com- B2, G1, G2, M1 and M2 are bisfurano-coumarin deriva-
pounds like vinyl chloride [11] and pentachlorophenol tives. They are structurally closely related to the above
[9], or compounds from the chemically diverse group of mentioned chemical compounds. Aflatoxins are pro-
polycyclic aromatic hydrocarbons (PAH’s) [2, 5, 12, 28, duced during the secondary metabolism of filamentous
34, 36]. These bacterial strains can either utilise a wide fungi. Especially aflatoxin B1 (AFB1) belongs to the most
variety of xenobiotics as growth substrates or they are re- dangerous naturally occurring mycotoxins because of its
stricted to only a few or a single hazardous compound. hepatotoxic, hepatocarcinogenic, mutagenic and terato-
Growth of Mycobacterium vanbaalenii [20], for example, genic effects, both on humans and on animals. AFB1 is
is described with naphthalene, phenanthrene, anthracene, produced both under moderate and under subtropic and
fluoranthene, pyrene, 1-nitropyrene, 3-methylcholan- tropic climatic conditions. Because of its hazardous nature,
thene, 6-nitrocrysene and benzo[a]pyrene. Mycobacteri-
um frederiksbergense [41] mineralises phenanthrene, flu-
oranthene or pyrene and Mycobacterium hodleri [21] Genbank accession number: AJ617741
0723-2020/04/27/06-653 $ 30.00/0
654 D. Hormisch et al.
different physical and physico-chemical techniques have samples of the heptamethylnonane phase 1:350 with methanol
been developed to detoxify and to degrade AFB1 [40]. prior to injection.
AFB1 is a physically and physico-chemically stable
molecule, e.g. temperatures > 250 °C are necessary for ef- Analytical methods
As described [37], 40 mg wet weight of cells were saponified,
fective destruction. Foods treated for physical degrada- methylated and extracted. The derived fatty acid methyl esters
tion of AFB1 are not acceptable for human consumption. (FAMEs) were analysed by GC (model 5898A, Hewlett Packard,
Therefore, biological degradation of AFB1 without sig- controlled by MIS software, Microbial ID) and the “Microbial
nificant alteration of the sensory characteristics of a Identification” standard software package [35]. Thin layer chro-
food, would be most advantageous, particularly in situa- matography investigation of mycolic acids followed described
tions of food scarcity. During the search for bacterial de- methods [24, 26]. Mycolic acids were extracted from saponified
graders of AFB1, strains from different habitats, includ- cells and transferred to their bromophenacyl esters [3, 25]. After
ing soils from a former coal gas plant, were screened for addition of low and high molecular mass standards (Ribi Im-
their ability to degrade AFB1. Among the few positive munoChem Research) the mixture was separated and analysed
by HPLC (C18 Ultrasphere XL cartridge column, 35 °C,
strains, one was found to belong to the genus Mycobac- Hewlett Packard Series 1050 operated with the Sherlock System
terium but could not be allocated to any known species software, MIDI Inc.). For the analysis of the mycolic acid cleav-
of this genus, thus representing a putative new species. age products (MACP) the cells were treated as described above
This paper describes Mycobacterium strain FA4T which for fatty acids. To enhance the pyrolysis of the mycolic acids 10
is able to degrade AFB1 most effectively. µl of 0.2 M methanolic TMSH was added to the fatty acid/my-
colic acid methyl esters extract and analysed by GC [29].
Table 1. Physiological properties of M. fluoranthenivorans DSM 44556T, M. diernhoferi, M. hodleri and M. vanbaalenii.
Formation of pigment a N N S S
Gram stain + + + +
Acid fast stain + + + +
Growth at 20 °C/28 °C/37 °C + + + +
Growth at 42 °C – – – –
Tween 80 hydrolysis – – – (+) c +
Nitrate reduction + – – +
Urease activity n.a. – +c +
Catalase activity – + + +
Growth on:
Xylose + + + –
Trehalose – + + (–) c –
Sorbitol – + + –
Utilisation b of:
N-acetyl-d-glucoseamine – + + n.a.
D-Glucosaminic acid – + – n.a.
Gluconate + + + n.a.
D-Sucrose – + – –
D-Turanose – + – n.a.
L-Rhamnose – + + –
D-Ribose – + + n.a.
D-Arabitol – + + n.a.
I-Inositol + + + n.a.
Mannitol + + + n.a.
Citrate – + – –
2-Oxoglutarate + + + n.a.
Glutarate n.a. + – n.a.
Succinate – + + n.a.
L-Alanine + + + n.a.
L-Aspartate – + + n.a.
L-Leucine + + + n.a.
L-Proline + + + n.a.
L-Valine – + + n.a.
Putrescine + + + n.a.
Acetamide – + – n.a.
Phenyl acetic acid – + – n.a.
Benzoate – + – n.a.
4-Amino-benzoate – + – n.a.
4-Hydroxy-benzoate – + – n.a.
Quinate – + + n.a.
P-nitrophenylphosphoryl-choline + + – n.a.
a
S, scotochromogenic, N, nonchromogenic.
b
Assimilation of auxanographic substrates was detected photometrically by means of reduction of the redox dye MTT (Kirchhof
et al. 1992). + = E540(test) – E540 (control) > 0.129; – = E540 (test) – E540 (control) <0.129.
c
Data from Kleespies et al. [21], d Data from Willumsen et al. [41], e Data from Khan et al. [20] n.a. data not available
20 °C, 28 °C and 37 °C but not at 42 °C. In contrast to a tives and p-nitrophenylphosphoryl-choline were utilised
well expressed catalase activity, no urease or nitrate re- as aromatic substrates (Table 1).
duction activity was observed, and Tween 80 was not hy- Table 1 summarises the physiological characteristics of
drolysed (Table 1). strain FA4T, including its utilisation of a broad spectrum
From the group of polycyclic aromatic hydrocarbons, of carbon sources such as sugars, sugar alcohols, amino
only the isolation substrate fluoranthene was metabolised acids, organic acids and mono aromatic compounds.
by strain FA4T. No growth was detected with naphtha-
lene, anthracene, phenanthrene, acenaphthene, acenaph-
Degradation of AFB1
thylene, fluorene, chrysene, or pyrene as the single carbon
source (Table 2), and the strain could not utilise biphenyl. AFB1 degradation by Mycobacterium strain FA4 was
However, phenylacetic acid, benzoate, benzoate deriva- relatively rapid and effective, leaving no detectable AFB1
656 D. Hormisch et al.
Table 2. Growth of M. fluoranthenivorans DSM 44556 T, M. hodleri, M. vanbaalenii and M. frederiksbergense with biphenyl or sev-
eral polycyclic aromatic hydrocarbons as single carbon sources.
Table 3. Composition of FAMEs derived from whole-cell hydrolysates of strain FA4T and members of the Mycobacterium neoaurum
cluster.
Fatty acid (%) FA4T DSM 43524T DSM 44346T DSM 44077T DSM 44183T DSM 44074T
10:0 0.66 – – – – –
12:0 0.60 – – – – –
14:0 10.02 6.23 5.45 4.73 5.74 5.72
15:0 – – 0.66 0.35 1.05 –
16:1 cis-7 – 2.17 6.30 0.54 1.49 3.48
16:1cis-9 13.46 0.77 – 0.83 2.42 5.23
16:1cis-10 4.60 5.65 3.41 3.56 6.07 –
16:0 42.11 25.27 31.44 26.87 25.17 28.31
16:0 10-methyl 2.17 – – – 0.76 –
17:0 – – – 0.42 – –
18:2 – – – 0.45 0.63 –
18:1cis-9 16.80 20.57 34.83 14.55 20.27 30.46
18:0 3.37 3.98 2.27 3.00 1.24 1.96
18:0 10-methyl 5.09 11.15 1.36 9.33 18.46 5.57
20:0 1.11 – 1.36 0.46 – –
18:0 alcohol – 18.00 10.78 16.77 13.93 15.07
20:0 alcohol – 4.57 1.71 16.32 2.77 1.74
Values are percentages of total fatty acids. Secondary alcohols that are released from wax esters are included. Examples of abbrevia-
tions: 16:0, hexadecanoic acid (palmitic acid);
18:1 cis-9, cis-9-octadecenoic acid (oleic acid); 18:0 10 methyl, 10-methyloctadecanoic acid (tuberculostearic acid); 20: 0 alcohol, 2-
eicosanol.
M. chitae DSM 43633, M. farcinogenes DSM 43637, M. fortuitum DSM 46621, M. peregrinum DSM 43271, M. porcinum DSM
44242, M. senegalensis DSM 43656, M. smegmatis DSM 43756.
after 72 h. The AFB1 concentration was reduced to dition (Table 3). The pyrolysis esters of the mycolic acids
amounts of 70% to 80% of the initial concentration showed a chain length of 22, 24 and 26 carbon atoms
within 36 hours. In further experiments, cell-free extracts (Table 4). The mycolic acid pattern separated by TLC
of Mycobacterium FA4 have been used in the same way, was composed of alpha-mycolates and epoxy mycolates
both to confirm these observations and the enzymatic na- (Table 4). Analyses of mycolic acids by HPLC revealed a
ture of the degradation activity (data not shown). characteristic UV-HPLC chromatogram with a two-peak
cluster that emerged late and close together after 6–8
minutes (Fig. 1). It seems that there is a correlation be-
Chemotaxonomic properties
tween this HPLC-chromatogram and the occurrence of
The analysis of the fatty acids revealed a pattern com- alpha-mycolate and epoxy-mycolates because this two-
posed of straight chain saturated and unsaturated fatty peak cluster is always present in mycobacteria species
acids with an even number of carbon atoms. The diag- which synthesise alpha-mycolates and epoxy-mycolates
nostic 10-methyl branched fatty acids were found in ad- i.e. M. agri, M. chelonae, M. chitae, M. farcinogenes,
Mycobacterium fluoranthenivorans sp. nov. 657
Table 4. Mycolic acids and pyrolysis esters of strain FA4T and members of the M. neoaurum group a.
Mycolic acidsa FA4T DSM 43524T DSM 44346T DSM 44077T DSM 44183T DSM 44074T
alpha-mycolates + + + + + +
alpha′-mycolates (+) – – – – –
Methoxy-mycolates – – – – – –
Keto-mycolates – + + + + +
Epoxy-mycolates + – – – – –
Waxester-mycolates – + + + + +
w-1-Methoxy-mycolates – – – – – –
Pyrolysis esters
C22: 0 + + + n.d. + +
C24: 0 + + – n.d. + –
C26: 0 + – – n.d. – –
a
Data from Willumsen et al., 2001; b +, present; –, absent; (+), small amounts present; n.d., no data.
M. diernhoferi DSM 43524T, M. frederiksbergense DSM 44346 T, M. gadium DSM 44077 T, M. hodleri DSM 44183T, M. neoaurum
DSM 44074T.
members of the M. fortuitum., M. goodie, M. pere- scribed species was M. diernhoferi ATCC 25795T (98%
grinum, M. smegmatis, M. wolinskyi, M. porcinum and sequence similarity). Strain ATCC BAA-823, proposed as
M. senegalense [4, 15]. “Mycobacterium hackensackense” [17] (AY266138)
shows identity with the homologous sequence of strain
FA4T.
Phylogenetic analysis
Determination of the 16S rRNA gene sequence and the
Differentiation of strain FA4T from other mycobacteria
comparison with other sequences of members of the
genus Mycobacterium revealed that strain FA4T belongs Strain FA4T could clearly be separated from the other
to M. neoaurum subgroup of fast-growing mycobacteria. members of the M. neoaurum complex by its fatty acid
The closest relationship obtained with the type of a de- pattern. FA4T lacks the two secondary alcohols C18:0
658 D. Hormisch et al.
Table 5. Mycolic acids of Mycobacterium sp. FA4T and other species showing alpha- and epoxy-mycolates in their mycolic acid pat-
terns.
DSM 43633T
DSM 43637T
DSM 46621T
DSM 43271T
DSM 44242T
DSM 43656T
DSM 43756T
Mycolic acids a
FA4T
alpha-mycolates + + + + + + + +
alpha′-mycolates (+) + (+) + (+) + (+) +
methoxy-mycolates – – – – – – – –
keto-mycolates – – – – – – – –
epoxy-mycolates + + + + + + + +
waxester-mycolates – – – – – – – –
omega-1-methoxy-mycolates – – – (+) (+) (+) (+) –
a
Data from Vincent Levy-Frebault & Portales, 1992; Hinrikson & Pfyffer, 1994.
M. chitae DSM 43633T, M. farcinogenes DSM 43637 T, M. fortuitum DSM 46621T, M. peregrinum DSM 43271T,
M. porcinum DSM 44242 T, M. senegalensis DSM 43656 T, M. smegmatis DSM 43756 T.
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identification of mycobacteria by using the microbial iden- Corresponding author:
tification system in combination with additional trimethyl- W. H. Holzapfel, Federal Research Center for Nutrition and Food,
sulfonium hydroxide pyrolysis. J. Clin. Microbiol. 36, Institute of Hygiene and Toxicology, Haid-und-Neu-Str. 9,
2477–2480 (1998). 76131 Karlsruhe, Germany
30. Pfennig, N.: Anreicherungskulturen fuer rote und gruene Tel.: ++(0)721-6625-450; Fax: ++(0)721-6625-453;
Schwefelbakterien. In: H. G. Schlegel (ed.) Zentralbl. Bak- e-mail: wilhelm.holzapfel@bfe.uni-karlsruhe.de