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VIRUS INTRO NOT IN CHART - see very beginning of note package and beginning of viruses!!
Group of 8 DNA viruses grouped Adherence, Entry: envelope fuses with
together due to their common virion Large, enveloped, linear dsDNA corse host cell membrane, Transport to
morphology and mode of replication nucleus
Herpesviridae family Replication
Outcomes: 1) Lytic infections, 2) latent
infections, 3) Persistent infections, 4)
Immortalizing infections
4M's: Mixing & Matching of Mucous Avoid contact with mucocutaneous
HSV-1 and HSV-2 Infect and replicate in mucoepithelial cells Membranes (vesicle fluid, saliva, Herpes simplex infection lesions: infectious from prodrome
vaginal secretions) even to crusted lesions - gloves!
Lytic infections at site, persistent infections in HSV-1: early on in life. Horizontal: oral
HSV-1 infects above the waist, hsv-2
macrophages and lymphocytes, and latent contact, auto-inoculation to eye or Herpetic keratitis (ocular herpes)
infects below the waist
infections in nerve ganglia and salivary glands mouth
Herpes simplex virus HSV-2: later on in life. Horizonal: sexual
practices. Vertical: ascenting in utero Herpetic Whitlow
infection or during vaginal birth
Meningitis.
Encephalitis
Genital herpes
Neonatal Herpes simplex infection
Like Herpes simplex: causes blister-
like lesions (but different sizes and Very contagious - contagious from 48 hrs, Healthy kids: not treated, relatively
Primary infection: 2-4 days after: to
Also termed Herpes Virus III stages, deeper, more painful and can before symptoms until all the lesions are Chicken pox (varicella) mild disease that gives life-long
lympatics
cause scarring), establish latent completely dry immunity
infections in nerves, CMI
Unlike HSV: spread via respiratory
Cause of Chicken pox (varicella) and Peak occurrence of chicken pox: spring time
route, no detectable lesions at site of Secondary viremia: thoracic fever. Reye's syndrome
Shingles (herpes zoster) and 5-10 years old
Varicella Zoster virus entry
Peak occurrence of shingles: adult pop esp >65 VZV becomes latent in dorsal root or
Shingles (herpes zoster)
(10-20%). cranial root ganglia
Active herpes zoster can cause chicken pox in Reactivated in older adults and
susceptible child or adult but will NOT cause immunocompromised - migrates back Herpes zoster opthalmicus
shingles. along dermatome --> shingles
Ramsey Hunt syndrome (Herpes
zoster oticus)
URT - lymphotropic - infected cells
contains both mRNA and DNA --> Opportunistic pathogen - rarely causes disease mc viral cause of congenital healthy immune system, safe sex
(leukocytes, lymphocytes) spread CMV
unlike other viruses in immuno-competent hosts defects practices
throughout the body
Similar to Herpesviridae: 1) syncytia, 2)
Transmitted as STD, transfusion/
latent state, 3) reactivation in MOST common asymptomatic
transplantation, oral, congenital
immunosuppressed state
Cytomegalovirus
Can be latent in T cells, macrophages, other Mononucleosis (heterophile Ab
cells negative, unlike EBV)
Congenital - cytomegalic inclusion
disease
Multisystem symptomatic disease
(when immunocompromised)
Control is impossible - virus is
Ultimate B lymphocyte pathogen.
A gamma herpesvirus Very common virus Monomucleosis uniquitous and is shed from saliva
Mitogenic and immortalizing
of healthy people
Transmitted MC'ly by saliva or from
Limited host range and tissue trophism African Burkitt's Lymphoma
contaminated glassware - "kissing disease"
To cause neoplasms - need other cofactors latent or lytic infections Nasopharyngeal carcinoma
3 outcomes: lytic, latent, or
Imminity to EBV is lifelong
immortalization
EBV Infection first in oropharynx, shed in
*old word for mono (for
mild disease in children saliva - saliva remains infectious for
homeopathy) = glandular fever
months after clinical recovery
Iiff overactive immune system
--"infectious mono"
iff lack of immune response
--"lymptoma" e.g. burkitt's
T cell response - atypical lymphocytes -
Downey cells
human herpes virus Ubiquitous. Cause life long infections Lymphotropic Roseola infantum
6
latent infection in t cells Mononucleosis type illness
orphan disease in search of a disease although
linked to febrile illness with potential Orphan disease
Human Herpes virus convulsions in children
7 Very common - 75%
Prevents HIV-1 from getting into CD4 cells -
can this be a HIV vaccine
Affects peripheral blood lymphocytes, B Cause of Kaposi's sarcoma in
Human herpes virus
Gammavirus like EBV found only in Italy, greece, Aftrica cells, vascular endothelial cells, AIDs patients - high incidence after
8
perivascular spindle cells KI transplant
Retroviridae 4 main subfamilies: One of the most studied viruses
1) Oncornavirinae
2) Lentivirinae - HIV-1, HIV-2
3) Spumavirinae
4) Endogenous viruses
gp120 - initially attaches to CD4
HIV+ does not mean you have
Delicate outer envelope - hard to receptor on macrophages. Later
2 types: HIV-1 and HIV-2 very limited host and species range HIV Aids! CD4+: CD8+ tells status and
get! attaches to CD4 receptor on Th cells
staging of Aids
and CXCr4 (fusin) chemokine receptors
gp120 (Ag and receptor specificity Sexual intercourse (anal/vaginal) - HIV enters chemokine co-receptors - very Allopathic treatment: RT inhibitors,
leads to high amount of antigenic and infects Langerhands DC's in epithelium or important for establishing infection and Protease inhibitors, Peptide T-20
drift). Changes all the time! GIT? increasing liklihood of developing AIDS and T-1249
Increased risk with anal sex - only one layer of
Attachment fo specific cells - fusion of Safe sex - latex condoms only!
colonic cells. Cells might have certain co-
envelope Safe needle practices!
receptors
Transmission: Sexual - anal and vaginal. Less
infectious than other STDs. 7% if oral sex with Makes dsDNA Two part vaccine
recently infected man.
RT (reverse transcriptase) is very error
Peri-natal - from birth
prone
HIV Blood: IV drug users, needle stick injuries, integrated into host chromosome by
blood transfusions integrase
Initial huge paranoia: risks are slight unless
Can also spread between cells -
close intimate contact and/ or transfer of
syncitia
semen, blood, vaginal secretions
Problem: long, prodromal asymptomatic period. Inactivates key elements of immune
Infectious before identifiable symptoms. system - inactivates CD4+ T cells
Not likely by: casual contact, touching, kissing,
Hypervariable regions - antigenic drift of
coughing, sneezing, insect bites, water, food, Evated immune system by:
gp120
utensils, toilets, swimming pools…
HIV-1: 70% men. 42% homosecual men.
Latent infection - unique promotor/
Geveloping countries: relative increase among
enhancer regions (LTRs)
heterosexuals.
HIV-2: mostly west africa direct: cytotoxicity of CD4+ t cells
Supression of immune system:
Indirect - induces apoptosis
p24 at early and late stages (core of
virus)
Cause disease iff: immunocompromised,
Diseases associated with disruption of
Opportunistic fungi trauma, ABC's, dietary imbalance, endocrine Oral candidiasis: "Thrush"
normal bacterial ecology in the body
changes, pH changes
dimorphic but unlike other mycotic
Veginal candidiasis: "Yeast
Candida agents only present in hypae in body Diseases are not contagious
infection"
(no yeast cells)
Detect morphology after treatment Chronic Mucocutaneous
with 10% KOH Candidiasis (CMC)
Disseminated candidiasis
Aspergillosus flavus (on peanuts, corn
no yeast-like form - only a mold form and other grains) produces aflatoxin - Mycotoxicoses hypersensitivity
Extremely common
(form spore bearing hyphae) very potent carcinogen: hepatocellular pneumonitis
carcinoma
Aspergillus
strict pathogen (unlike Candida) Aspergillus Secondary colonization
Paranasal granuloma
Aspergillosus systemic disease
Ubiquitous: soil, pigeon droppings (dessicated
NO dimorphism in pathogenesis Cryptococcosis (also Busse-
alkaline rich, N2 rich, hypertonic), poultry farms, Capsule (anti-phagocytic)
Cryptococcus spp. (unlike other systemic mytotic agents) Buschke disease or torulis)
eucalyptus trees
Encapsulated yeast Cryptococcosis meningitis
Included with fungi only because of Opportunistic infection - common in
Pneumonia Oxygen
molecular traits environment
also found in rodents (not reservoir for human
Pneumocystis carinii Has features like protozoans Extrapulmonary ABCs
disease)
Transmission is via respiratory droplets
Increased risk if immunosuppressed
3 main genera separated due to
differences in VAP activity and gene Enveloped
arrangement:
Paramyxoviridae
family
1) Morbillovirus - measles virus - Penetrate cell by fusion (form
Paramyxoviridae "rubeola", animal disease cyncytia)
family 2) Paramyxovirus - parinfluenzae and
Replicate in cell cytoplasm
mumps viruses
3) Pneumovirus - respiratory syncytial
virus **use homeopathic engystol Transmitted via respiratory droplets
against this
Very contagious - 85% infection rate,
One of the MC causes of death in childern 1-5 Measles Control: MMR vaccine
95% chance of disease development
In paramyxovirus family 99.5% decrease since vaccine Uinqueness of measles: Pneumonia
Nearly all people infected become
Giant cell pneumonia
unwell and develop disease
Very characteristic "pathognomic"
Post infectious encephalis
clinical presentation
Morbillovirus
Sub-acute sclerosing
only 1 serotype
panencepahalitis
Complete resistance to re-infection Atypical measles
highly contagious - 85%
Big contrast in disease severity with
proper nutrition, access to health care
etc.
4 serotypes: Types 1-3: 2nd most
common cause of severe respiratory
In paramyxovirus family Ubiquitous Laryngitis Treat symptoms only
distress in infants and young children,
can cause croup
Parainfluenzae virus Initial site of infection is the upper
respiratory tract - epithelial cells.
Transmission is person to person and
Usually contained here and rarely Parainfluenzae
respiratory droplets
becomes systemic (unlike measles/
mumps)
MC in infants and children <5 Only partial immunity (unlike measles) Croup
Only affects umans - adult infection more Very infectious (but less than measles Symtpmatic only, no anti-viral
In paramyxovirus family Mumps
severe than children or chicken pox) agents
infect upper respiratory tract epithelial
cells. Infect parotid gland via viremia or Orchitis
Stenson's duct --> Parotitis
Paramyxovirus
Life-long resistance to infection (like
Oophoritis
measles)
Pancreatitis
Meningitis.
Arthritis
Infection localized to upper or lower Control: almost impossible. Too
Ubiquitous - virtually everyone in NA is infected
RSV In paramyxovirus family No hemagglutinin respiratory tracts. No systemic spread/ URI with marked rhinorrhea ubiquitous and good vaccines are
by age 4 (very contagious)
viremia not available
Other treatment: euphorbium
Epidemics in every winter in cold, temperate
Form syncytia No long term immunity Bronchiolitis compositum (good for RSV and
climate
rhinovirus)
#1 cause of severe lower respiratory tract Zn - decrease RSV replication, but
infection in young children (Day cares, OM in high doses depresses immune
nurseries) system
Common cold causes: 1) rhinorhea virus. 2)
coronavirus 3) RSV
Transmitted via hands, fomites and respiratory
secretions
Always symptomatic. Range from mild
Family togavirus Enveloped childhood diseaes "German measles" to severe causes heterologous intereference Rubella
congenital defects
unlike other togaviruses: respiratory
less contagious than measles or
Rubivirus rubeolla = measles tropism and no detectable humans are only host Polyarthritis
mumps or varicella
cytopathology (no lysis)
spread via respiratory secretions or
Rubella congenital
transplacental
increased risk of harmful disease if pregnant
cause of erythema infectiosum (5th Usually treatment is not required -
Smallest of Dna viruses (only 22nm) In all countries Erythema infectiousum
disease) to aplastic crisis to arthritis self-limiting
Prevention difficult because rash
or arthralgia stages are not
naked capsid virus MC in 4-10 year olds in late spring and winter MC'ly asymptomatic Parvovirus B19 fetal infection
infectious (immune complex
Parvovirus mediated)
very resistant to drying, acid/base, MC spread from respiratory droplets or close
Aplastic crisis
high salt etc contact to blood products
binds P antigen on rbc's, erythrocyte
progenitor cells, vascular endothelium Arthritis
and fetal myocytes
currently 7 viruses grouped together
because they all cause liver damage
1) HAV - picornavirus --> infectious
hepatitis
Hepatitis
2) HBV - hepadnovirus --> serum
hepatitis
3) HCV - flavivirus
4-7) D-F
Ingested (contaminated shellfish, clams,
Naked icosahedral ssRNA genome Differences from HBV: Hepatitis A Avoid uncooked shellfish
oysters)
extremely stable capsid slow replication, transient viremia HAV can not initiate a chronic infection Chlorine treatment of water
Pathology due to immune mediated hepatocyte
Not stable to chlorine HAV not associated with hepatic CA
damage
rarely get immune complex related rash
40-60% of acute hepatitis in USA
HAV and polyarthritis
Person-to-person, fecal-oral and sewage
contaminated food/water (often traceable rarely fatal (fulminant hepatitis)
source, can live in water for many months)
1 month incubation --> abrupt onset of
icteric symptoms
fecal-oral spread
enveloped, small circular, partly MC'ly in blood or blood products (serum
differences from HAV: Hepatitis B
dsDNA hepatitis)
unusally stable for an enveloped virus Chronic carrier - test + for HbsAg 2 occasions hepDNA vuris
transmitted by
over 1/3 of the world is infected
blood/needles/STD/perinteral
HBV
longer incubation (3 months) and then
insidious onset of symptoms
can get chronic hepatitis carriers
can cause primary hepatocellular
carcinoma (PHC)
not as resistant
Microbe System Condition Signs and Symptoms DDX and Lab Dx
"spaghetti and meatballs" organisms
Malassezia furfur (pityriasis Lipophilic, yeast-like organism. Non-itchy hypopigmented telsions on upper
Superficial mycoses Skin Tinea (pityriasis) versicolor after KOH prep. Wood's lamp (+).
ovale) torso, arms, abdomen. Dry chalky and scale easily.
DDX with vitiligo.
Characteristically dark pitmented
Phaeoannuellomycoses
Superficial mycoses Skin Tinea nigra MC asymptomatic. Well demarcated, macular lesions on palms/soles. yeast cells and hyphal fragments on
wernickii (Exophilia wernickii)
KOH prep
Dar, hard nodules along infected hair
Superficial mycoses Piedraia hortae Hair Black piedra Hairs of scalp, mustache, beard, groin. Direct or sexual contact.
shaft
Superficial mycoses Trichosporon beigelii Hair White piedra Hairs of scalp. Direct contact only. Soft, pasty white growth on hair shaft.
Only 5% of people get it. 10 day incubation. Acute, self limiting influenzae like
illness (fever, malaise, dry cough, lymphatenopathy. Resolve completely with Microscopy: 10% KOH prep with silver
some residual calcified lesions (coin lesions). Not contagious.Complications: or Giemsa stain. Serological: skin test:
Systemic mycoses Histoplasma capsulatum Systemic Primary histoplasmosis overly aggressive immune response. Mediastinal fibrosis. Progressive: too many false (+). Cultures: slow
Disseminate via lumphatics. Increased risk if impaired CMI. TB-like iff growing (1-2 weeks) and spores are
chronic: fever, night sweats, weigh loss with destructive (caseating necrosis) infectious. DNA probes. Direct ELISA.
lung lesions.
Serious retinal condition. Leading cause of blindness in 20-40 year olds.
Systemic mycoses Histoplasma capsulatum Eye Ocular histoplasmosis syndrome. Often misdiagnosed. "Histo spots" bilaterally. MC'ly no visual loss but can be
activated to cause visual changes (4 kinds)
Skin test and serology - too many
45 day incubation. Bronchopneumonia. Drenching sweats, No residual false (+). Microscopty - biopsy/
calcified lesions (unlike Histo). Not contagious. Skin lesions are slowly histology of KOH prepped tissue.
Blastomycosis Skin Acute Blastomycosis
expanding ulcerative or cerrucous lesions with a granulous base on face and Culture. No tuberculat macroconidia in
mucocutanoues borders of nose and mouth. saprobic phase (unlike H.
capsulatum). CXR.
Blastomycosis Systemic Chronic Blastomycosis TB or cancer like
Skin test antigens. Skin test 2-4
weeks after symptoms. Coccidiodin.
Spherulin. (for both
1) MC'ly asymptomatic. 2) 40% of infected people get mild, febrile to
phases)Complement fixation. CXR -
moderately severe respiratory disease. Not contagious. 3) <5% - progressive
Coccidiodomycosis Coccidiodomycosis "egg shell" lesions. Tissue Biopsy-
pulmonary disease. 4) <<1% - disseminated disease. Erythema nodosum with
staining and microscopy for
arthralgia.
spherules. Culture - CAUTION -
infectious - leading cause of lab
infections!
Tzanck smear: look for Syncytia
Skin break - localized primary infection in mucosa. Vascular lesions (damage
(fused membrane, not specific, also
due to viral immonopathology and apparent healing). Then retrograte
for: HSV, VZV, HIV,
transport to neuron nucleus - latent infection. Stress (emotional, fever, direct
Herpes simplex Skin Herpes simplex infection paramyxovirus.Cowdry Type A
sunlight, menstruation / hormones, immunosuppresion). Lesions: "dew drop
inclusion bodies (HSV or VZV).
on rose petal". Secondary infection is more localized and shorter duration
Characteristic CPE (cyto pathological
than primary infection.
effect)
Unilateral, recurrent. Can lead to dendritic corneal ulcers --> permanent
Herpes simplex Eye Herpetic keratitis (ocular herpes)
damage
Herpes simplex Skin Herpetic Whitlow Herpes infection of finger
HSV-2 - often a complication of genital herpes. Sudden onset of nuchal
Herpes simplex Systemic Meningitis.
rigidity, blinding H/A, nausea, photophobia.
Seizures, signs of SOL (space occupying lesion), cause destruction to
Herpes simplex Brain Encephalitis
temporal lobe. MC cause of sporadic encephalitis.
Caused by HSV-1 (10& orogenital sexual practices) and HSV-2 (90%). STD
3-7 days after contact. Regional lymphadenopathy, painful shallow ulcers.
Herpes simplex Reproductive Genital herpes Recurrent (2-3 weeks or rarely) prodrome of burning/tingling. Female: pruritis,
vaginal or cervial mucoid discharge. Increased risk of cervical CA in
adulthood and HIV. Male: dysuria and/or duspaerunia.
Acquired in utero or during vaginal birth or post-natal (family members or
Herpes simplex Systemic Neonatal Herpes simplex infection
hospital personnel). Devastating, often fatal. Affects CNS, lungs, liver.
One of the 5 childhood exanthems: rubella, roseola, 5th disease,
measles/rubeola. Inhalation: maculopapular rash ("dew drop on rose petal"),
Tzanck smear: giant, multinucleate
intense pruritus, rapid development and spread from back/chest to scalp.
cells - syncytia. Cowdry Type A
Within 12 hours: successive crops of lesions. Prolonged low grade fever.
Varicella zoster virus Skin Chicken pox inclusion bodies: "drop like masses of
extremem irriability/malaise. Much more harmful to adults - scarring. More
acidophilic material surrounded by a
severe on trunk than extremeties, also on mouth, conjunctiva, vagina.
clear halo within the nucleus"
complications: 1) secondary bacterial infections.2) Reye's syndrome, CNS
symptoms.
Can occur after chicken pox, enterocirus, EBV, influenzae B, aflatoxin
Varicella zoster virus Systemic Reye's syndrome (peanuts), pesticide. ASA associated - do NOT give aspirin to a child with
chickenpox.
Recurrence of latent VZV infection. Prodrome: severe pain in localized nerve
area. 3-5 days later: gradual development of small red macules, closely
Varicella zoster virus Neural Shingles spaced, MC'ly in thoracic area or trigeminal nerve area, unilateral. Post
herpetic neuralgia: long term (months to years) severe recurring burning or
itching pain, hyperesthesia. Unlike herpex simplex: lesions are various sizes.
Varicella zoster virus Neural Herpes zoster opthalmicus CN V (facial) and CN III (ocular changes - cornal ulcers - blindness)
Ramsey Hunt syndrome (Herpes painful lesions along CN VIII (severe otalgia, hearing loss, vertigo, vesicular
Varicella zoster virus Neural
zoster oticus) lesions along external ear canal) and lesions along CN V (Bell's palsy)
MC viral agent of congenital disease in US. Clinical disease in 10%:
congenital - cytomegalic inclusion microencephaly, hearing loss(SNL) rash, hepatosplenomegaly. Fetus is Confirm by isolating CMV from child's
Cytomegalovirus Systemic
disease infected either: placenta or recurrent mother infection - ascending infection urine in 1st week of life.
from cervix.
Infectection of fetus or newborn by any of the TORCH agents.
Toxoplasmosis, other, rubella virus, cytomegalovirus, histoplasmosis.
Cytomegalovirus Systemic TORCH syndrome
Outcome is abortion, stillbirth, or premature delivery. Fever, lethargy, poor
feeding…..
Heterophile (-) mono. Clinical signs
Through vaginal birth with infected cervix or colostrum or milk. 2 outcomes:
and symptoms too vague to be that
asumptomatic or symptomatic if immunocompromised. Very common cause
Cytomegalovirus Eye Peri-natal useful. Biopsy: owl's eye nuclease.
of failure of KI transplants. IFF immunocompromised: Retinitis: "pizza pie
Cell culture: characteristic CPE in
retina" --> scotoma, "blind spot". Esophagitis: mimic CRC esophagitis
diploid fibroblastic cells
Triad of: fever, pharyngitis and
lymphadenopathy for 1-4 weeks.
kissing disease - heterophile (+) mono. Symtoms: high fever, malaise,
Downey cells. Monospot test (+)
pharyngitis, tonsils with whitish exudate, lymphadenopathy,
Heterophile Abs - polyclonal activation
EBV Systemic Mononucleosis hepatosplenomegaly, fatige. Spleen rupture - avoid contact sports, hepatitis.
of B cells produces wide reportoire of
Cyclic recurrent disease. (if lasts over 6 months) EbV induced
abs that recognize "paul Bunnel" Ags
lymphoproliferative dease(looks like leukemia)
on horse, sheep, cow, RBCs but not
guinea pig
Tumor cells are from lymphocytes and contain EBV DNA. Malaria is a co-
EBV Systemic African Burkitt's Lymphoma
carcinogen. Large lesions - osteolytic - on jaw
EBV Systemic Nasopharyngeal carcinoma Epithelial cell tumor. Co-factor: ingested nitrosamines.
Opportunistic infection in HIV AIDS patients. Vertically ribbed keratinized
EBV Oral Hairy oral leukoplakia
plaques on lateral borders of the tongue
Rapid onset of high fever. Fever subsides and then get maculopapular rash.
HHV-6A Skin Roseola infantum
Also termed exanthum subitum.
progression time of HIV to aids. Assoc with neurological disorders: might be
HHV-6A Systemic Mononucleosis type illness Heterophile (-) mono.
linked to MS, cronic fatigue.
Acute retroviral syndrome: viremia. Mono-like syndrome (heterophile -),
mucocutaneous sores. Illness subsides spontaneously. 60%+ become
asymptomatic. Mouth ulcers, oral candidiasis, EBV-like. Initial screen: indirect ELISA for gp120
Mid stage - ACR (AIDS related complex). Insiduous onset - weight loss. Night or gp41 (2x to confirm). New- Ora
sweats, fatigue,opportunistic infections Quick Rapid HIV-1 Ab test. Western
blot: for gp120 or p24 or p31 proteins.
HIV Systemic HIV AIDS: 1) presence of anti-HIV gp120 abs, 2) decreased CD4+ t cells, 3) Active viral replication (Recent
wasting syndrome 4) presence of opportunistic infections. Primary defence infection or late stage) - direct ELIZA
against opportunistic pathodens is progressively diminised. Diseases: hairy for p24, viral load in Rt or in blood via
oral leukoplakia, oral thrush, kaposi's sarcoma, pneumocystis pneumonia, PCR. Culture - difficult, looking for
CMV retinitis syncitia
AIDS related dementia: sub-acute encephalopathy. Slow, progressive
deterioration of mental abilities. Can minic alzheimer's disease