Beruflich Dokumente
Kultur Dokumente
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Fundamentals of Microbiology
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Microbiology
Concerned with the form, structures, reproduction, physiology, metabolism and identification of microorganisms
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Microbiology
Microbiology
Types of Microorganism
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Bacteriol ogy
Applied Areas of Microbiology
Virology
Mycology
Applied Microbiology
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Applied Microbiology
Chemotheraphy
Food Industry
Applied Microbiology
Genetic Engineering
Medical Research
Genetic Engineering
Human growth hormone
(Dwarfism) Insulin (Diabetes) Blood clotting factor (Hemophilia) Recombinant vaccines (Hepa A and B vaccines)
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Applied Microbiology
Genetic Engineering
Human hemoglobin (Emergency blood substitute) Taxol (Breast and ovarian cancer) Erythropoeitin (Anemia) Monoclonal antibodies (Disease dx and prevention)
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Applied Microbiology
Medical Research
simple and small structures; easy to study genetic material is easily manipulated can grow large number of cells quickly; at low cost short generation time; useful to study genetic changes
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Applied Microbiology
History of Microbiology
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History of Microbiology
Early Studies
Robert Hooke Anton Von Leeuwenhoek
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Spontaneous Generation
History of Microbiology
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History of Microbiology
Spontaneous Generation
vs Biogenesis
(established by Rudolf Virchow)
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History of Microbiology
Theory of Biogenesis
FRANCISCO REDI
proved that maggots do not arise spontaneously from decaying meat
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History of Microbiology
LAZARO SPALLANZANI
found that nutrient broth that
had been heated in sealed flask would not become contaminated with microbes contradicted John Needhams (pro-SGT) expt
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History of Microbiology
LOUIS PASTEUR
finally disproved SG demonstrated that microbes in the environment were responsible for microbial growth in nutrient broth
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History of Microbiology
LOUIS PASTEUR
designed SWAN NECK FLASKS that allowed air in, but trapped microbes in neck developed ASEPTIC TECHNIQUE (practices that prevent contamination by unwanted microorganisms)
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Pasteurs Expt
History of Microbiology
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History of Microbiology
Fermentation
- yeasts convert sugar into alcohol in the absence of air - souring & spoilage are caused by bacterial contamination of beverages
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Fermentation
History of Microbiology
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History of Microbiology
Fermentation
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Pasteurization
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Disease causes - identified microbes that caused silkworm disease; fowlcholera causing disease Vaccine - for rabies from dried spinal cord of infected rabbits
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History of Microbiology
AGOSTINO BASSI
found that a fungus was
History of Microbiology
IGNAZ SEMMELWEISS
demonstrated
that childbirth fever was transmitted from one patient to another, by physicians who didnt disinfect their hands
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History of Microbiology
JOSEPH LISTER
used disinfectant to treat surgical wounds, greatly reducing infection rates considered the father of antiseptic surgery
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History of Microbiology
ROBERT KOCH
first to conclusively proved that a specific bacterium caused a disease via an expt on anthrax-causing disease
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ROBERT KOCH Germ Theory: one microbe causes one specific disease
History of Microbiology
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History of Microbiology
ROBERT KOCH
History of Microbiology
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History of Microbiology
History of Microbiology
EDWARD JENNER
vaccination (anti-smallpox) immunity
Cowpox blisters scrapings
Inoculated to an 8yr old by scratching
History of Microbiology
Modern Microbiology
Chemotheraphy
Quinine first known chemical
to treat disease (malaria) Synthetic drugs lab made drugs (first made: SALVARSAN)
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History of Microbiology
Modern Microbiology
Classification of Microorganism
Taxonomic Hierarchy
organisms are grouped into series of subdivisions
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Domain
Phylum Class Order Family
Genus
Kingdom
Specific epithet
Scientific Name
Classification of Prokaryotes
Bergys Manual of Bacteriology in some cases : pure cultures of the same species differs - Strain (each group) * collection of cells derived from a single cell * identified by numbers, letters, or names ff specific epithet
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Classifying Microorganisms
Nomenclature
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Diversity of Microorganisms
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Diversity of Microorganisms
1. Bacteria
simple, unicellular, prokaryote with cell wall : peptidoglycan divides by binary fission source of nutrients varies: heterotrophs / autotrophs motility : flagella or cilia
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Diversity of Microorganisms
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Diversity of Microorganisms
Bacteria
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Diversity of Microorganisms
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Diversity of Microorganisms
2. Archaea
unicellular; some with cell walls (lacks peptidoglycan) extreme environment three groups: methanogens extreme halophiles extreme thermophiles
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Diversity of Microorganisms
Archaea
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Diversity of Microorganisms
3. Fungi
eukaryote unicellular or multicellular do not carry out photosynthesis source of nutrients varies : saprotrophs or parasitic true fungi with cell walls : chitin reproduce sexually or asexually
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Diversity of Microorganisms
Fungi
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Diversity of Microorganisms
4. Protozoa
unicellular; eukaryote locomotion : pseudopods; flagella; cilia free living or parasitic
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Diversity of Microorganisms
5. Algae
photosynthetic eukaryote unicellular or multicellular sexual or asexual reproduction with cell wall : cellulose
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Diversity of Microorganisms
6. Viruses acellular infectious agents obligate intracellular parasites simple structure : either with DNA or RNA surrounded by protein coat
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Viruses
Diversity of Microorganisms
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Diversity of Microorganisms
Diversity of Microorganisms
Helminths
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Prokaryotes
Eukaryotes
Cell size
Nucleus Membrane organelles Cell wall
0.2 2 m in dm
Absent Absent Chemically complex
10 100 m in dm
Present Present When present, simple
Ribosomes
DNA
Smaller (70S)
Single circular chromosome
Flagella
Cell division
Rotary in movement
Binary fission
Reproduction
Cytoskeleton
Conjugation
Absent
Prokaryotic Cell
bacteria and archaea differences in: Morphology (shape / arrangement); Chemical composition (staining reactions); Nutritional requirements; Biochemical activities; Energy source (sun / chemicals)
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Prokaryotic Cell
Bacterial Morphology
basic shapes : coccus, bacillus, spiral spiral
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Coccus
Diplococci in pairs Streptococci in chains Tetrads groups of four Sarcinae groups of eight Staphylococci grapelike clusters Maribao, Mgfb
Prokaryotic Cell
Cocci
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Bacillus rodshaped; mostly appear as single rods Diplobacilli in pairs Streptobacilli in chains Coccobacillus oval rods
Prokaryotic Cell
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twists Vibrio comma shaped; like curved rods Spirilla helical; corkscrew shaped w/ rigid bodies; use whiplike external flagella Spirochetes helical ; w/ flexible bodies; use Maribao, Mgfb axial filaments
Prokaryotic Cell
Prokaryotic Cell
pleomorphism
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Prokaryotic Cell
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Special structures
Prokaryotic Cell
Special structures
Prokaryotic Cell
Fxns of glycocalyx
attachment nutrient source prevent dehydration escape host immune system
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Prokaryotic Cell
Glycocalyx
Capsule
organized; firm to the cell wall bacterial virulence; prevent dessication; attachment evades phagocytosis Bacillus anthracis Streptococcus pneumoniae Streptococcus mutans Klebsiella sp. Maribao, Mgfb
Prokaryotic Cell
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Prokaryotic Cell
Glycocalyx
Slime layer unorganized; loosely attached to cell wall important virulence; adherence prevent dehydration
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Special structures
Prokaryotic Cell
2. Flagella
long; filamentous; helical; thin motility 4 arrangements: monotrichous amphitrichous lophotrichous peritrichous
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Prokaryotic Cell
Flagella
3 basic parts : *filament (long; outermost; flagellin) *hook (filament is attached) *basal body (anchorage ) - w/ central rod in ring series motility patterns allow taxis
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Special structures
Prokaryotic Cell
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Prokaryotic Cell
Axial filament
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Special structures
Prokaryotic Cell
Special structures
Prokaryotic Cell
Fimbriae
at poles or over entire cell surface adheres to surfaces colonizes host tissue
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Special structures
Prokaryotic Cell
Pili
conjugation or sex pili longer than fimbriae only 1 or 2 for each cell allow transfer of genetic material between cells transfer of antibiotic resistance genes
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Prokaryotic Cell
Fimbriae vs Pili
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Prokaryotic Cell
Prokaryotic Cell
Fxns: selective barrier nutrient breakdown and energy (ATP) production site of photosynthesis
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Prokaryotic Cell
2. Cytoplasm
inclusions; nuclear area; ribosomes no cytoskeleton no cytoplasmic streaming
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Prokaryotic Cell
3. Nuclear Area
nucleoid : single, long, circular dsDNA (bacterial chromosome) plasmids : small, circular dsDNA; replicates independently
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Prokaryotic Cell
4. Ribosomes
site of protein synthesis 70S consist of protein & rRNA
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Prokaryotic Cell
5. Endospores
durable dehydrated cells; thick walls & addtl layers sporecoat & dipicolinic acid specialized resting cells survives extreme heat, lack of water, toxic chemicals, disinfectants, acids, bases
Prokaryotic Cell
Endospore
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GERMINATION
Vegetative cell (metabolicall y active)
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Prokaryotic Cell
6. Inclusions
reserve deposits in cytoplasm Metachromatic granules - inorganic phosphate for ATP synthesis - Corynebacterium diphtheriae Polysaccharide granules - glycogen & starch Maribao, Mgfb
Prokaryotic Cell
Inclusions
Lipids - fat granules - Mycobacteria; Bacillus; Azotobacter; Spirillum Sulfur granules - energy - Thiobacillus
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Prokaryotic Cell
Inclusions
Carboxysomes - carbon fixation - nitrifying bacteria, cyanobacteria, thiobacilli Gas vacuoles - regulate bouyancy; aquatic bacteria
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Prokaryotic Cell
Inclusions
Magnetosomes - w/ iron oxide; aquatic Gram negative bacteria - decomposes hydrogen peroxide
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Prokaryotic Cell
Prokaryotic Cell
Prokaryotic Cell
Composition : peptidoglycan (murein) * repeating disaccharide attached by polypeptides forming LATTICE * disaccharide component : 2 monosaccharides = NAG and NAM
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Prokaryotic Cell
peptidoglycan * alternating NAG-NAM are linked in rows of 10 to 65 molecules * adjacent rows are linked by POLYPEPTIDES - tetrapeptide side chains linked by peptide cross bridges (targeted by PENICILLIN)
Prokaryotic Cell
Prokaryotic Cell
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Prokaryotic Cell
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Prokaryotic Cell
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Prokaryotic Cell
Prokaryotic Cell
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Prokaryotic Cell
Gram negative cell wall OUTER MEMBRANE : LPS; lipoproteins; phospholipids * LPS : O polysaccharide lipid A (endotoxin) * evades phagocytosis & host defenses * barrier to some antibiotics, digestive enzymes * w/ PORINS (form channels) Mgfb Maribao,
Prokaryotic Cell
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Prokaryotic Cell
Counterstain
Accepted
Accepted
Thin
LPS
Teichoic acid
Absent
Present
Present
Absent Maribao, Mgfb
Prokaryotic Cell
Bacterial Physiology
Physical reqts for growth
Temperature
1. Psychrophiles
- cold loving; can grow at 00C; w/ 2 grps: * True psychrophiles - below 200C * Psychrotrophs
0
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Bacterial Physiology
psychrophiles
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Bacterial Physiology
2. Mesophiles
- middle loving; mostly pathogens; causes most food spoilage; 25 400C
3. Thermophiles
- heat loving; 45 600C; HYPERTHERMOPHILES (extreme thermophiles) * Archea; 800C or higher
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Bacterial Physiology
Thermophiles
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pH
- most bacteria : neutral pH (6.5-7.5) yeasts & molds: wider pH range but prefers 5-6
1.Acidophiles
- very low pH (0.1-5.4); - ex. Chemoautotrophs, Lactobacillus
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Lactobacilli
Bacterial Physiology
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2. Neutrophiles
3. Alkalinophiles / Basophiles
- alkaline or high pH (7-12 or higher) - ex. Vibrio cholerae, Alkaligenes faecalis, Agrobacterium
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Vibrio cholerae
Bacterial Physiology
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Bacterial Physiology
Agrobacterium
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Osmotic Pressure
- cells are 80 90% water
1. Hypertonic solutions
- increased OP : removes water from cell (plasmolysis)
2. Hypotonic solutions
- decreased OP : water enters the cell
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Salinity
1. Halophiles
3. Facultative Halophiles
- do not require high salt concentrations, but tolerates 2% salt or more
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Halophiles
Bacterial Physiology
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Osmolarity
1. Osmophiles 2. Osmotolerant
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Nutritional requirements
(Chemical requirements)
Bacterial Physiology
Carbon
- 50% of dry weight of cell - structural backbone of organic cmpds
1.Chemoheterotrophs
- from energy source : lipids; proteins; CHO - organic carbon (glucose) Maribao, Mgfb
2. Chemoautotrophs / Photoautotrophs
- from CO2 - inorganic carbon
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Nitrogen
- 14% of dry cell weight - used to form amino acids, DNA, RNA - sources: protein from bacteria; ammonium ions; N2; nitrates
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Bacterial Physiology
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Sulfur - used to form proteins; some vitamins (thiamin & biotin) - sources: H2S; sulfate ions; sulfurcontaining amino acids
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Phosphorus
- used to form DNA, RNA, ATP, phospholipids - sources: inorganic phosphate salts; buffers
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Trace Elements
Growth factors
- used as coenzyme factors - K; Mg; Ca; Fe; Cu; Mo; Zn; Co; B
- vitamins; amino acids 1. phototrophs can synthesize GF 2. Auxotrophs cannot synthesize GF Maribao, Mgfb
Energy Source
Water
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Oxygen requirements
1.Obligate (strict) Aerobes
- require oxygen - ex. Pseudomonas; common nosocomial pathogens
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Pseudomonas
Bacterial Physiology
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2.Obligate Anaerobes
- cannot use oxygen; harmed by toxic forms of oxygen; ex. Clostridium spp.
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Clostridium
Bacterial Physiology
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3.Facultative Anaerobes
- w/ or w/o oxygen - ex. E. coli; Staphylococcus; yeasts; many intestinal bacteria
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Staphylococcus
Bacterial Physiology
yeasts
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4.Aerotolerant Anaerobes
- w/ or w/o oxygen but grow best in the absence of oxygen - ex. Lactobacillus
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5.Microaerophiles
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Bacterial Physiology
Campylobacter
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6.Capnophiles
- require CO2
Other ways of Bacterial Identification
Biochemical tests
Enzymatic activities - ability to ferment a selected CHO
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Identifying pathogen
(characteristics) - family of Enterobacteriaceae * oxidase negative
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Generation Time
time required for a cell to divide depends & varies among organisms & envtl conditions mostly : 3 hrs others: 24hrs/gen. considers only BINARY FISSION
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Phases of Growth
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Phases of Growth
1.Lag phase - physiological growth; 1 hr to several days - period of adjustment of organism to new envi. - little multiplication 2. Log phase - exponential phase; cell division - metabolically active cells BUT Maribao, Mgfb sensitive to adverse conditions
Phases of Growth
3. Stationary phase - period of equilibrium; population size stabilizes; - growth rate slows down - # of microbial deaths balances # new cells 4. Death phase - decline phase; decrease in # - cells lost the ability to divide -# of deaths exceeds # of new cells
Bacterial Genetics
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Bacterial Genetics
RNA
Transcrip tion
Proteins
Translation
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Bacterial Genetics
DNA Reactions:
1. REPLICATION
one parental dsDNA molecule is converted to 2 daughter cells semi conservative strands
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Bacterial Genetics
DNA replication
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Bacterial Genetics
2. GENE EXPRESSION
TRANSCRIPTION
copying or transcribing the genetic info in DNA into a complementary base sequence of RNA RNAs are made : mRNA; tRNA; rRNA
Bacterial Genetics
Transcription
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Bacterial Genetics
2. GENE EXPRESSION
TRANSLATION
process by w/c the base sequence of mRNA determines the amino acid sequence of a protein
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Translation
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Bacterial Genetics
inhibits gene expression & decreases the synthesis of enzymes response to overabundance of endproduct
2. INDUCTION
turns on transcription of genes Maribao, Mgfb
Bacterial Genetics
3. MUTATION
change in base sequence of DNA spontaneous or induced
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Bacterial mutation
Bacterial Genetics
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Bacterial Genetics
Bacterial Genetics in
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Bacterial Genetics
1.Transformation in bacteria
genes are transferred from 1 bacterium to another as naked DNA in soln
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Bacterial Genetics
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Bacterial Genetics
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Bacterial Genetics
2. Conjugation in bacteria
mediated by 1 kind of plasmid sex pilus allows genetic transfer F factor - F+ & FMaribao, Mgfb
Bacterial Genetics
Conjugation in Bacteria
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Bacterial Genetics
Conjugation
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Bacterial Genetics
3. Transduction in bacteria
bacterial DNA is tranferred from donor cell to recipient cell inside a bacteriophage
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Transduction
Bacterial Genetics
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Terms:
Sterilization
- destruction of all forms of microbial life - done by steam under pressure/ sterilizing gas Commercial sterilization - sufficient heat tx to kill endospores of C. botulinum in canned food Maribao, Mgfb
Terms:
Disinfection
- destruction of vegetative pathogens - uses physical or chemical methods
Antisepsis
- destruction vegetative pathogens on living tissue - via chemical antimicrobials Maribao, Mgfb
Terms:
Degerming
- removal of microbes from limited area (ex. Injection site)
Sanitization
- lowers microbial counts on eating & drinking utensils
Biocide / Germicide
- kills microbes
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Terms:
Bacteriostasis
- inhibits growth & multiplication of bacteria
Sepsis
- bacterial contamination
Asepsis
- absence of contamination - free of pathogens Maribao, Mgfb
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Physical Methods
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Autoclave
Dry heat Oven
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Physical Methods
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Physical Methods
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Physical Methods
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UV sterilization
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Chemical Methods
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Chemical Methods
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Chemical Methods
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Viruses
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Viruses
parasites; acellular; genetic info in a protein coat no enzymes; directs hosts cell metabolic machinery significant to medicine
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Discovery
Dmitri Iwanowski (Russian)
tobacco mosaic disease
Viruses
Viruses
Viruses
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Viruses
Classification
1.HOST RANGE
spectrum of hosts a virus can infect bacteria, animals, plants, fungi, protists
2. SIZE
approx. 20-14,000 nm smaller & simpler than bacteria
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Viruses
Classification
Viral Specificity types of cells that virus can infect Dermotropic Neurotropic Pneumotropic Lymphotropic Viscerotropic
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2. Viral Size
Viruses
3. STRUCTURE
based on coats structure capsid; envelope; spike
Viruses
Viruses
viral capsid
- capsomeres - 3 arrangements: polyhedral; helical; complex
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polyhedral
many sided common : ICOSAHEDRON
Viruses
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Adenovirus
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Poliovirus
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helical
long rods; NA in hollow cylindrical capsid
Viruses
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Rabies virus
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Ebola virus
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Viruses
Complex
mostly bacterial viruses (bacteriophage)
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Poxvirus
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Bacteriophage
Bacteriophage
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viral envelope
Viruses
- cytoplasmic membrane from host cells - sensitive to chloroform & ether - w/ or w/o spikes - used for identification - enveloped helical or enveloped polyhedral
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HSV 1
HSV2
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Viruses
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Replication Pathways
1.Lytic cycle
Cell bursts at end of cycle T-even (virulent phage)
Viruses
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Viruses
2. Lysogenic cycle
host cell remains alive leads to quiescent state (lysogeny) latent (inactive)
Lysogenic Cycle
Attachment & Penetration Circularization Integration (formation of Prophage) Excision
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Viruses
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Detection of Viruses
o Electron mx o Immunologic Assays - Western Blot - ELISA o Biological Assays o Hemagglutination Assay o Molecular Assays - PCR - Southerns (DNA) or Northern (RNA)
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Mechanism
Inhibits uncoating
Inhibits DNA polymerase Inhibits DNA polymerase Inhibits viral enzymes for guanine biosynthesis Inhibits reverse transcriptase Inhibits protein Mgfb Maribao,
Viruses
Viruses
Shingles(Varicella- zoster)
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Viruses
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Disease
(Morbillivirus)
Rapid mental deterioration
Viruses
Prions
- no nucleic acid
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Viruses
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Viruses
Retroviruses
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Viruses
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Influenza virus
Viruses
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Influenza virus
Viruses
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Viruses
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Viruses
Tumor virus
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Fungi
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Viruses
Special Issue
AIDS : The Risk to Health Care Workers
understanding the risk CDC
universal precautions by CDC * gloves * gowns, masks, goggles * needles * disinfection Maribao, Mgfb
Viruses
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Fungi
Fungi
Fungi
Mycology General Characteristics cause of infections (as nosocomial & in compromised immune systems)
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Fungi
General Morphology
Candida
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Fungi
1. Yeasts
Pneumocystis
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Fungi 2. Molds
Fungi
Fungi
used as food (mushrooms) produce foods (bread & citric acid) drugs (alcohol & penicillin) Maribao, Mgfb
Fungi Reproduction
Fungi
Characteristics: uses biochemical tests to identify physical appearance for multicelled fungi Mgfb Maribao,
Fungi
Fungi
Nutritional structures vegetative * describes fungal Requirements elements teleomorphs * produce sexual & asexual spores anamorphs Maribao, Mgfb * only asexual
Fungi
phyla thallus (body) * w/ long filaments of cells (hyphae) * septate or coenocytic hyphae * fragmentation
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Fungi
Fleshy fungi
Fungal diseases
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Fungi
Fungi
Fungal diseases
Yeasts
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Fungi
budding yeasts (Saccharomyces) some w/ pseudohyphae (Candida albicans) fission yeasts (Schizosaccharomyces)
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Fungi
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Candida
Fungi
Fungal diseases
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Fungi
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Fungi
asexually by fragmentation of hyphae sexual & asexual by spore formation identified by spore type
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Fungi
Fungi
Nutritional Adaptations
grow better in pH 5 mostly aerobic most yeasts are facultative anaerobes mostly resistant to osmotic pressure
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Fungi
Nutritional Adaptations
can grow w/ very low mositure content require less N2 metabolizes CHO (such as lignin)
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Fungi
Nutritional Adaptations
can grow on unlikely subs (bathroom walls, shoe leather, discarded newspapers)
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Fungi
(conjugation fungi) saprophytes w/ coenocytic hyphae Rhizopus nigricans (common black bread mold)
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Fungi
Rhizopus nigricans
sporangiospores as asexual spores zygospores as sexual spores
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Fungi
include molds w/ septate hyphae & some yeasts conidiospores as asexual spores ascospores as sexual Maribao, Mgfb spores
Fungi
Fungi
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Fungi FUNGAL DISEASES Fungal mycosis diseases generally chronic infections 5 groups accdg to degree of tissue involvement & mode of entry into the host: subcutaneous cutaneous superficial opportunistic Maribao, Mgfb
Fungi Systemic mycoses Fungal diseases deep within the body not restricted to any particular region of the body affects a number of tissues & organs caused by fungi that lives in soil via spore inhalation infection begins in lungs then speads non-contagious Maribao, Mgfb
Fungi Systemic mycoses Fungal diseases Histoplasmosis - superficially resembles TB - usually lungs initially infected - spreads in blood & lymph - causes lesions in body organs - poorly defined symptoms - abt 0.1% cases become progressive & severe - Histoplasma capsulatum Maribao, Mgfb
Histoplasma capsulatum Fungal diseases dimorphic fungi airborne conidia in bats, bird droppings
Fungi
Coccidioidomycosis Coccidioides immitis (dimorphic) in dry, alkaline soil of American southwest valley fever or San Joaquin fever air inhalation Maribao, Mgfb
Fungi Subcutaneous mycoses Fungal diseases beneath skin by saprophytic fungi in soil & vegetation via direct spore implantation into wound puncture
Cutaneous mycoses (dermatomycoses) by dermatophytes infects epidermis, hair, nails Maribao, Mgfb
Fungi Cutaneous mycoses Fungal diseases human to human; animal to human direct contact
Superficial mycoses localized in hair shafts & surface epidermis prevalent in tropical climates
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Fungi Opportunistic pathogen Fungal diseases in debilitated or traumatized patients (under tx w/ antibiotics) immunosuppressed patients Stachybotrys - in water-damaged walls of homes - causes pulmonary hemorrhage in infants Maribao, Mgfb
Fungi Opportunistic Fungal diseases Mucormycosis - Rhizopus & Mucor in patients w/ diabetes mellitus, leukemia, taking immunosuppressive drugs
Fungi Opportunistic Fungal diseases yeast infection (candidiasis) Candida albicans occurs as vulvovaginal candidiasis or thrush in newborns, AIDS patients
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Fungi
used in biotechnology Aspergillus niger * used to produce citric acid for food & beverages since 1914
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Fungi
Saccharomyces cerevisiae
used to make bread & wine genetically engineered to produce proteins (Hepa B vaccine)
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Fungi
Saccharomyces, Torulopsis
Trichoderma
Fungi
used to remove plant cw to clear fruit juice produces taxol (anticancer drug)
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Fungi
used as biological pest control Entomorphaga killed gypsy moths (in US)
Candida oleophila
Fungi
undesirable effects in industry & agriculture * spoilage of fruits, grains, vegetables * on jams & jellies Re: paraffin layer on top of jar
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Fungi
Phytophthora infestans
caused potato blight (Ireland mid-1800s) infect soybeans, potatoes, cocoa
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Fungi
Cryphonectria parasitica
Ceratocystis ulmi
Fungi
green alga + fungus in mutualistic rel 1st life forms to colonize newly exposed soil or rock secrete organic acids Maribao, Mgfb (weathers rock)
Fungi
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Fungi
Economic Importance as dyes for clothing usnic acid from Usnea as antimicrobial agent in China Erythrolitmin as dye in litmus paper (pH indicator) Maribao, Mgfb
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Transient Microbiota
present for a time & then disappear
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Symbiosis
Living together Commensalism Mutualism Parasitism
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o Opportunistic Pathogens * organisms that normally do not cause disease in their natural habitat in a healthy person
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Treponema pallidum
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Mycobacterium leprae
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Rickettsia
Chlamydia
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One disease may involve several different pathogens diarrhea pneumonia meningitis peritonitis nephritis
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Contagious spread easily from one person to another Noncommunicable not spread from one host to another
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Disease Occurrence
Disease Incidence - % of popn that contracts a disease in a given time Disease Prevalence - % of popn that has the disease during a given time
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Disease Occurrence
Sporadic Disease occurs only occasionally ex. polio Endemic constantly present in the popn ex. common colds Epidemic many people acquire disease in short period of time Pandemic worldwide epidemics
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Disease Duration
Acute develops rapidly, but lasts a short time ex. Flu & common colds
Chronic develops more slowly, & rxns are less severe ex. TB, Hepa B, infectious mononucleosis
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Disease Duration
Latent causative agent remains inactive for a time, but then becomes active & produces diseases symptoms ex. Shingles, genital & oral herpes, AIDS
Host Involvement
Local Infection microbes are limited to small area of the body ex. boils, acne Systemic (Generalized) Infection microbes are spread throughout the body by blood or lymph ex. measles , AIDS
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bacteremia septicemia toxemia viremia Focal Infection starts as a local infection & spread to other parts of body ex. From teeth, tonsils, appendix
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Spread of Infection
Chain of Infection
Causative agent
Susceptible Host Reservoir
Portal of Entry
Mode of Transmission
Portal of Exit
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Spread of Infection
Reservoirs of Infection Human infected individuals who may or may not present a disease ex. Carriers of AIDS, gonorrhea
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Reservoirs of Infection
Animal zoonoses are diseases that occur primarily in wild & domestic animals
Transmission of Disease
Contact Transmission Direct person-to-person
Indirect agent is transferred via nonliving object Droplet microbes are spread in mucus droplets that travel short distances (less than 1 m)
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Vehicle Transmission
Waterborne caused by water contaminated w/ sewage Airborne by droplets in dust that travels more than 1 m to the host
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Vectors Arthropods (insects) Mechanical transmission passive transport of pathogens on insects body Biological transmission pathogen spends of its life cycle in the vector
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Portal of Exit
Respiratory tract from nose & mouth GIT exit in saliva or feces Urogenital tract penis & vagina; urine; skin & wound infections Blood via insects , needles , syringes
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Important Nosocomial Pathogens normal microbiota antibiotic resistance other microbes Enterobacteria Proteus spp., Enterobacter spp., & Serratia marcescens Staphylococcus aurues Fungi C. albicans & others Pseudomonas aeruginosa Mgfb Maribao,
avoid unnecessary antibiotic prescriptions avoid unnecessary invasive procedures regular disinfection of respirators & humidifiers & maintenance of autoclaves use of disposable &/or sterile supplies infection control committee
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Development of Disease
Incubation period Prodromal period
Illness period
Convalescence period
Decline period
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Epidemiology
o studies when & where diseases occur & how they are transmitted in a popn o etiology; predisposing factors; incidence; prevalence; transmission; Public Health Policy & Prevention
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Analytical
Case control method look for factors that precede disease - compare sick individuals to healthy individuals
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Analytical
Cohort method - studies two popn, one that has been exposed to a certain risk factor Experimental test drugs or vaccines on susceptible popns
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Case Reporting requires health workers to report specified diseases to govt agencies
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Host Defenses
Resistance * ability to ward off disease
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Host Defenses
Host Defenses
Line of Defense
Host Defenses
nd 2
Line of Defense
innate nonspecific immune defenses provide rapid local response to pathogen after it has entered the host Ex. Fever; Phagocytes; Inflammation; Interferon
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Host Defenses
- targets attack specific invaders that gets past the first 2 lines of defense
Ex. Antibdies , lymphocytes
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Host Defenses
(IMMUNE SYSTEM)
* Mucous membrane
* Secretions
Host Defenses
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Host Defenses
Mechanical Defenses
Skin
Host Defenses
Mechanical Defenses
Mucous Membranes except: Papillomavirus Treponema pallidum Enteroinvasive E. coli Entamoeba histolytica
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Host Defenses
Mechanical Defenses Lacrimal apparatus Saliva Mucus Nose hair Ciliary escalator Coughing & sneezing Epiglottis Urination Vaginal secretions Maribao, Mgfb
Host Defenses
Chemical Defenses
Sebum w/ unsaturated fats pH (low) w/ lactic acid & fatty acids Perspiration w/ lysozyme & fatty acids Lysozyme
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Host Defenses
Chemical Defenses
Gastric juice (pH1 3) w/ HCl, enzymes, mucus Transferrins w/ iron binding proteins
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Host Defenses
Phagocytosis
Eat and cell Phagocytic cells: Macrophages (Monocytes), Neutrophils, Eosinophils
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Host Defenses
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Host Defenses
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Macrophage
Host Defenses
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Host Defenses
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Stages of Phagocytosis
Chemotaxis
Host Defenses
Ingestion
Digestion
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Host Defenses
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Process of Phagocytosis
Host Defenses
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Host Defenses
Inflammation
- triggered by tissue damage due to infection, heat, wound, etc.
- signs & symptoms : redness, pain, heat, swelling, loss of function
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Host Defenses
Inflammation
Functions: destroy & remove pathogens limit effects by confining pathogen & its products repair & replace damaged tissue
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Host Defenses
Stages of Inflammation
Vasodilation
Histamine Kinins Prostaglandins Leukotrienes Phagocyte Migration & Margination margination & diapedesis
Inflammation Process
Host Defenses
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Host Defenses
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Host Defenses
Antimicrobial Substances
Complement system
- large group of serum proteins - participates in lysis of foreign cells, inflammation, phagocytosis
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Antimicrobial Substances
Host Defenses
* Alternative pathway
initiated by direct interaction of complement proteins w/ microbial polysaccharides
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Host Defenses
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Host Defenses
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Host Defenses
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Host Defenses
Interferons (IFNs)
antiviral proteins that interferes w/ viral multiplication
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Host Defenses
Interferon gamma
- produced by lymphocytes - causes neutrophils to kill bacteria
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Host Defenses
Host Defenses
Host Defenses
Host Defenses
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Host Defenses
Artificially Acquired Immunity obtained by receiving vaccine or immune serum Artificially Acquired Active Immunity Artificially Acquired Passive Immunity
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Host Defenses
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Host Defenses
Clonal Selection
Host Defenses
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Host Defenses
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Host Defenses
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Antibodies
Host Defenses
Immunoglobulin Classes
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Host Defenses
Antigens
proteins or large polysaccharides from foreign organism microbes or nonmicrobes
Hapten small foreign mol that is not antigenic Epitope small part of antigen that interacts w/ an antibody
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IgG
IgM
IgA
monomer
80%
pentamer
5-10%
Dimer
10-15%
monomer
0.2%
Host Defenses
0.002%
IgD
IgE
monomer
Blood, lymph, Blood, lymph, Secretions intestine & B cell (tears, saliva, surface milk, blood, lymph, intestine)
23 days yes 5 days yes 6 days No
3 days No
2 days No
Yes
No
No
No
No
Unknown
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Host Defenses
Affinity
measure of binding strength
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Host Defenses
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Host Defenses
Neutralization IgG inactivates viruses by binding to their surface - neutralize toxins by blocking their active sites
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1 2
Host Defenses
3 4
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Host Defenses
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Host Defenses
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Host Defenses
Cytokines
chemical messengers of immune cells - stimulate &/or regulate immune responses
Interleukins
- communication bet. WBCs
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Host Defenses
Interferons
- protect against viral infections
Chemokines
- Attract WBCs to infected areas
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Host Defenses
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Host Defenses
Cytotoxic T cells
- destroy target cells - lyse infected cells
T Suppressor cells
- may shut down immune response
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Host Defenses
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Host Defenses
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Host Defenses
Immunological Memory
o Primary Response
- no antibodies found in serum for several days - gradual increase in titer - B cells become plasma cells, some become long living memory cells - grdual decline of antibodies
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Host Defenses
o Secondary Response - due to subsequent exposure to the same antiigen - displays faster & more intense antibody response
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